Wall clock time and date at job start Tue Mar 31 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31518 * 119.65683 * 2 1 4 4 C 1.32807 * 121.76583 * 179.97438 * 3 2 1 5 5 C 1.48103 * 119.56691 * 180.02562 * 4 3 2 6 6 C 1.39562 * 120.06057 * 179.72839 * 5 4 3 7 7 C 1.37772 * 119.93687 * 179.71725 * 6 5 4 8 8 C 1.39045 * 120.06227 * 0.55830 * 7 6 5 9 9 O 1.35652 * 119.93880 * 179.74432 * 8 7 6 10 10 C 1.34813 * 116.99945 * 174.42824 * 9 8 7 11 11 H 1.07998 * 120.00201 * 5.04894 * 10 9 8 12 12 C 1.38672 * 119.99975 * 185.05229 * 10 9 8 13 13 N 1.31536 * 120.00439 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99969 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47451 * 89.99992 * 14 12 10 16 16 H 1.48503 * 109.47250 * 210.00280 * 14 12 10 17 17 H 1.48502 * 109.47007 * 329.99854 * 14 12 10 18 18 C 1.39046 * 120.11998 * 359.71525 * 8 7 6 19 19 C 1.37775 * 120.06325 * 0.02562 * 18 8 7 20 20 C 1.39584 * 120.86090 * 359.72026 * 4 3 2 21 21 C 1.37979 * 119.22539 * 0.53184 * 20 4 3 22 22 C 1.39694 * 119.65733 * 179.97438 * 2 1 3 23 23 C 1.43203 * 120.46431 * 0.02562 * 22 2 1 24 24 N 3.49043 * 80.30014 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47505 * 270.02646 * 1 2 3 26 26 H 1.09001 * 109.46794 * 30.02967 * 1 2 3 27 27 H 1.09005 * 109.46869 * 150.02071 * 1 2 3 28 28 H 1.08004 * 120.02626 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.96303 * 180.24765 * 7 6 5 30 30 H 0.96996 * 120.00971 * 180.02562 * 13 12 10 31 31 H 1.08002 * 119.96985 * 179.97438 * 18 8 7 32 32 H 1.08000 * 120.03094 * 180.02562 * 19 18 8 33 33 H 1.07999 * 120.38661 * 180.28457 * 20 4 3 34 34 H 1.08000 * 120.81239 * 179.75506 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1578 1.1429 0.0000 4 6 3.4849 1.1918 0.0005 5 6 4.1678 2.5060 0.0011 6 6 5.5620 2.5693 0.0073 7 6 6.1946 3.7932 0.0019 8 6 5.4455 4.9646 0.0020 9 8 6.0710 6.1683 0.0019 10 6 5.2924 7.2626 -0.1147 11 1 4.2171 7.1622 -0.1204 12 6 5.8722 8.5173 -0.2272 13 7 5.1125 9.5850 -0.3415 14 14 7.7320 8.6911 -0.2167 15 1 8.2454 8.6026 -1.6072 16 1 8.1030 10.0060 0.3653 17 1 8.3262 7.6028 0.6005 18 6 4.0563 4.9044 0.0015 19 6 3.4184 3.6832 0.0015 20 6 4.2445 0.0207 0.0069 21 6 3.6010 -1.1998 0.0016 22 6 2.1982 -1.2139 0.0005 23 6 1.4848 -2.4556 0.0005 24 7 0.9189 -3.4405 0.0015 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 6.1443 1.6598 0.0122 29 1 7.2735 3.8427 0.0027 30 1 5.5180 10.4626 -0.4206 31 1 3.4768 5.8157 0.0020 32 1 2.3394 3.6370 0.0007 33 1 5.3234 0.0694 0.0119 34 1 4.1634 -2.1218 0.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:11 Heat of formation + Delta-G solvation = 43.954079 kcal Electronic energy + Delta-G solvation = -19474.572270 eV Core-core repulsion = 16337.598356 eV Total energy + Delta-G solvation = -3136.973914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59284 -40.73382 -38.47286 -37.57301 -34.60760 -34.22391 -33.75520 -31.89451 -30.66985 -28.65089 -27.45355 -25.29536 -24.10197 -22.70803 -22.29575 -20.16425 -19.62372 -19.18759 -17.84467 -17.42247 -16.49264 -15.95420 -15.77687 -15.74555 -15.66011 -15.09152 -14.75181 -14.41690 -14.37225 -14.35065 -14.16559 -13.98439 -13.85073 -13.72815 -13.19786 -13.16158 -12.98866 -12.58657 -12.50892 -12.42587 -11.92706 -11.33028 -11.00998 -10.84294 -10.49826 -10.16872 -9.85200 -8.77522 -8.51146 -6.23442 -0.70713 0.27115 0.59755 0.68784 1.35042 1.38655 1.54832 1.55833 1.95931 2.28638 2.67108 2.73766 2.90902 3.04517 3.10911 3.23461 3.57622 3.71502 4.06626 4.09951 4.14666 4.33184 4.51764 4.57234 4.58223 4.66925 4.73485 4.86710 4.93738 5.05790 5.15479 5.26579 5.32669 5.47444 5.64209 5.69228 5.77366 5.86486 6.16783 6.37815 6.82160 6.94449 7.53067 8.59852 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.044757 B = 0.003149 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.447343 B = 8889.592270 C = 9495.838918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.185 3.815 3 N -0.513 5.513 4 C 0.217 3.783 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.192 4.192 8 C 0.140 3.860 9 O -0.233 6.233 10 C -0.402 4.402 11 H 0.082 0.918 12 C 0.011 3.989 13 N -0.920 5.920 14 Si 0.972 3.028 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.257 1.257 18 C -0.247 4.247 19 C -0.029 4.029 20 C -0.175 4.175 21 C -0.002 4.002 22 C -0.114 4.114 23 C 0.289 3.711 24 N -0.455 5.455 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.176 0.824 29 H 0.144 0.856 30 H 0.286 0.714 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.179 0.821 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -20.373 0.711 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.042 3.958 3 N -0.223 5.223 4 C 0.082 3.918 5 C -0.148 4.148 6 C -0.048 4.048 7 C -0.211 4.211 8 C 0.089 3.911 9 O -0.139 6.139 10 C -0.478 4.478 11 H 0.100 0.900 12 C -0.188 4.188 13 N -0.560 5.560 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.181 1.181 18 C -0.267 4.267 19 C -0.047 4.047 20 C -0.194 4.194 21 C -0.029 4.029 22 C -0.120 4.120 23 C -0.026 4.026 24 N -0.131 5.131 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.193 0.807 29 H 0.162 0.838 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.196 0.804 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.223 -20.829 0.711 20.877 hybrid contribution 0.559 0.709 -0.040 0.904 sum -0.664 -20.120 0.671 20.142 Atomic orbital electron populations 1.20898 0.87320 1.04228 1.04488 1.21579 0.97697 0.86290 0.90228 1.67557 1.09882 1.28880 1.15993 1.20026 0.88638 0.93090 0.90030 1.18371 0.93289 0.90487 1.12661 1.21233 0.92430 0.97479 0.93696 1.20508 1.00596 0.89339 1.10696 1.19912 0.91937 0.86197 0.93017 1.83487 1.36630 1.12262 1.81503 1.20739 0.91374 0.83561 1.52127 0.90003 1.25339 1.05123 0.93191 0.95150 1.69718 1.38219 0.99235 1.48781 0.85193 0.77597 0.78275 0.79547 1.18958 1.19473 1.18090 1.21226 0.94346 0.98953 1.12134 1.21073 1.00155 0.90553 0.92956 1.22262 1.03318 0.90543 1.03301 1.21884 0.91119 1.00094 0.89778 1.16889 0.93972 0.87061 1.14099 1.25333 0.92618 0.92152 0.92499 1.81293 1.09329 1.11871 1.10634 0.88643 0.89383 0.90270 0.80671 0.83846 0.90431 0.87255 0.85166 0.80352 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.77 71.24 0.70 -1.10 16 2 C 0.18 3.70 6.82 42.96 0.29 3.99 16 3 N -0.51 -12.73 9.30 -172.03 -1.60 -14.33 16 4 C 0.22 5.04 6.73 41.94 0.28 5.32 16 5 C -0.15 -4.15 5.88 -20.02 -0.12 -4.27 16 6 C -0.03 -0.75 9.41 22.48 0.21 -0.54 16 7 C -0.19 -6.29 9.98 22.35 0.22 -6.07 16 8 C 0.14 6.06 6.65 22.66 0.15 6.21 16 9 O -0.23 -11.88 8.58 -21.48 -0.18 -12.06 16 10 C -0.40 -22.79 9.94 67.92 0.68 -22.12 16 11 H 0.08 4.91 5.42 -2.91 -0.02 4.89 16 12 C 0.01 0.62 5.49 84.84 0.47 1.09 16 13 N -0.92 -53.61 13.96 21.62 0.30 -53.31 16 14 Si 0.97 43.31 28.62 68.60 1.96 45.27 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 C -0.25 -10.46 9.15 22.35 0.20 -10.25 16 19 C -0.03 -0.99 9.56 22.48 0.21 -0.78 16 20 C -0.17 -2.59 9.44 22.53 0.21 -2.38 16 21 C 0.00 -0.02 9.89 22.71 0.22 0.20 16 22 C -0.11 -1.91 5.75 -21.18 -0.12 -2.04 16 23 C 0.29 5.35 13.81 88.33 1.22 6.57 16 24 N -0.46 -10.31 18.54 19.00 0.35 -9.96 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.15 7.07 -2.38 -0.02 1.14 16 28 H 0.18 2.49 6.16 -2.91 -0.02 2.47 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.11 5.16 5.62 -2.91 -0.02 5.15 16 32 H 0.13 4.31 7.52 -2.91 -0.02 4.29 16 33 H 0.18 1.46 6.16 -2.91 -0.02 1.44 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -67.56 307.26 6.83 -60.73 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.16 Total: 9.81 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.84 Total: -26.16 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.95 Total: -77.60 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.18 Total: -12.06 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.96 Total: 45.27 kcal Total: -67.56 6.83 -60.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.687 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds