Wall clock time and date at job start Tue Mar 31 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29935 * 124.84446 * 2 1 4 4 C 1.36012 * 108.82925 * 180.02562 * 3 2 1 5 5 C 1.39721 * 133.65759 * 180.02562 * 4 3 2 6 6 C 1.36434 * 120.00364 * 179.97438 * 5 4 3 7 7 C 1.39788 * 120.44383 * 0.24045 * 6 5 4 8 8 C 1.48355 * 119.89755 * 179.72413 * 7 6 5 9 9 C 1.39741 * 120.41451 * 179.72318 * 8 7 6 10 10 N 1.31902 * 121.14701 * 179.71357 * 9 8 7 11 11 C 1.31522 * 122.12422 * 0.54729 * 10 9 8 12 12 C 1.40780 * 120.67045 * 359.74459 * 11 10 9 13 13 C 1.41441 * 120.60004 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00126 * 23.51055 * 13 12 11 15 15 C 1.39935 * 119.99912 * 203.50468 * 13 12 11 16 16 N 1.30833 * 119.99944 * 17.56067 * 15 13 12 17 17 Si 1.86796 * 120.00245 * 197.56224 * 15 13 12 18 18 H 1.48503 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47364 * 119.99890 * 17 15 13 20 20 H 1.48501 * 109.47018 * 240.00458 * 17 15 13 21 21 C 1.39172 * 120.41468 * 359.97438 * 8 7 6 22 22 C 1.39067 * 120.20277 * 359.47953 * 7 6 5 23 23 C 1.38456 * 119.64188 * 0.53568 * 22 7 6 24 24 O 1.34232 * 124.85163 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47726 * 269.98033 * 1 2 3 26 26 H 1.09001 * 109.46981 * 29.98031 * 1 2 3 27 27 H 1.09005 * 109.46930 * 149.97523 * 1 2 3 28 28 H 1.07990 * 119.99581 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.77853 * 179.97438 * 6 5 4 30 30 H 1.08006 * 119.42480 * 359.97159 * 9 8 7 31 31 H 1.08000 * 119.66605 * 179.71704 * 11 10 9 32 32 H 0.97002 * 120.00086 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.95296 * 0.03387 * 21 8 7 34 34 H 1.08004 * 120.18116 * 180.26069 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2493 1.0664 0.0000 4 6 3.5567 0.6911 -0.0006 5 6 4.7627 1.3966 -0.0004 6 6 5.9482 0.7213 -0.0006 7 6 5.9671 -0.6764 -0.0061 8 6 7.2631 -1.3984 -0.0125 9 6 7.2946 -2.7955 -0.0121 10 7 8.4385 -3.4521 -0.0234 11 6 9.5996 -2.8342 -0.0248 12 6 9.6647 -1.4280 -0.0195 13 6 10.9141 -0.7650 -0.0204 14 1 11.7921 -1.2681 -0.3980 15 6 11.0127 0.5427 0.4677 16 7 10.0656 1.0306 1.2271 17 14 12.4964 1.5918 0.0350 18 1 13.4181 0.8128 -0.8303 19 1 12.0482 2.8090 -0.6880 20 1 13.2029 1.9874 1.2799 21 6 8.4627 -0.6929 -0.0136 22 6 4.7748 -1.3923 -0.0004 23 6 3.5683 -0.7130 -0.0006 24 8 2.2740 -1.1016 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.7564 2.4765 -0.0001 29 1 6.8783 1.2703 -0.0009 30 1 6.3661 -3.3472 -0.0067 31 1 10.5123 -3.4116 -0.0295 32 1 10.1341 1.9370 1.5658 33 1 8.4719 0.3871 -0.0093 34 1 4.7898 -2.4722 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243959563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:12 Heat of formation + Delta-G solvation = 54.951969 kcal Electronic energy + Delta-G solvation = -20116.963711 eV Core-core repulsion = 16980.466701 eV Total energy + Delta-G solvation = -3136.497010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.03209 -38.92798 -37.39194 -34.73335 -34.21043 -32.32514 -30.88328 -30.58135 -29.77666 -26.96512 -25.79676 -23.35106 -22.71913 -21.81423 -21.07602 -20.48269 -17.75628 -17.37902 -16.87613 -16.69708 -15.82920 -15.33129 -15.03883 -14.40754 -13.85247 -13.61964 -13.50610 -13.42658 -13.17941 -12.80440 -12.72814 -12.36566 -12.10165 -11.74759 -11.53713 -11.40824 -11.33805 -11.09605 -10.94391 -10.65585 -10.27421 -10.02072 -9.50428 -8.98183 -8.55325 -8.25112 -7.98518 -7.29887 -6.97101 -4.62532 0.76478 1.51654 2.24603 2.61433 2.64032 2.95944 2.97484 3.01334 3.08297 3.76306 3.88245 4.01905 4.49949 4.72801 4.96231 5.09834 5.14154 5.29411 5.41424 5.48448 5.51683 5.52697 5.67556 5.89182 6.14882 6.24793 6.32136 6.37544 6.51686 6.58000 6.63721 6.89351 6.93973 6.98921 7.09356 7.50812 7.69438 7.74909 7.77131 8.26589 8.52501 8.55214 9.47259 9.92410 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.004240 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.531556 B = 6602.733454 C = 7611.323668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.225 3.775 3 N -0.478 5.478 4 C 0.002 3.998 5 C -0.061 4.061 6 C -0.108 4.108 7 C 0.027 3.973 8 C -0.098 4.098 9 C -0.021 4.021 10 N -0.468 5.468 11 C -0.012 4.012 12 C 0.060 3.940 13 C -0.446 4.446 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.789 5.789 17 Si 0.913 3.087 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.272 1.272 21 C -0.111 4.111 22 C -0.105 4.105 23 C 0.016 3.984 24 O -0.218 6.218 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.285 0.715 33 H 0.136 0.864 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 2.370 -1.636 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.013 3.987 3 N -0.208 5.208 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.127 4.127 7 C 0.026 3.974 8 C -0.100 4.100 9 C -0.179 4.179 10 N -0.175 5.175 11 C -0.173 4.173 12 C 0.056 3.944 13 C -0.476 4.476 14 H 0.104 0.896 15 C -0.145 4.145 16 N -0.413 5.413 17 Si 0.736 3.264 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.034 4.034 24 O -0.110 6.110 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.022 2.278 -1.498 12.328 hybrid contribution 0.874 0.823 0.005 1.201 sum -11.148 3.101 -1.493 11.667 Atomic orbital electron populations 1.20315 0.81335 1.05177 1.04794 1.26287 0.96437 0.78625 0.97307 1.70503 1.01304 1.29112 1.19924 1.19797 0.91827 0.91400 1.07903 1.19929 0.88533 0.99939 0.99586 1.21071 0.98173 0.93800 0.99695 1.18765 0.91836 0.92589 0.94197 1.19324 0.91133 0.94446 1.05083 1.21804 0.95140 0.89938 1.11026 1.66959 0.98622 1.41583 1.10364 1.22601 0.94062 0.91967 1.08708 1.18476 0.93813 0.92325 0.89833 1.19615 0.95152 0.97535 1.35272 0.89602 1.25990 0.97977 0.98224 0.92280 1.69779 1.32781 1.16682 1.22067 0.86174 0.81040 0.79696 0.79444 1.18159 1.19472 1.19769 1.21868 0.90102 1.00292 1.01319 1.19877 0.86545 1.00362 1.05550 1.20157 0.83376 0.94413 1.05456 1.84437 1.15550 1.36042 1.74936 0.88744 0.88032 0.89183 0.85010 0.83775 0.85938 0.85369 0.90393 0.84696 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.22 3.10 8.23 -13.08 -0.11 2.99 16 3 N -0.48 -7.86 11.33 -8.65 -0.10 -7.96 16 4 C 0.00 0.03 7.24 -84.64 -0.61 -0.58 16 5 C -0.06 -1.03 10.03 -39.68 -0.40 -1.43 16 6 C -0.11 -1.96 9.36 -39.65 -0.37 -2.33 16 7 C 0.03 0.53 5.88 -104.85 -0.62 -0.08 16 8 C -0.10 -2.17 5.88 -104.82 -0.62 -2.79 16 9 C -0.02 -0.47 10.59 -16.96 -0.18 -0.65 16 10 N -0.47 -11.24 10.32 -12.27 -0.13 -11.37 16 11 C -0.01 -0.30 10.96 -16.72 -0.18 -0.48 16 12 C 0.06 1.50 5.59 -106.71 -0.60 0.90 16 13 C -0.45 -10.89 9.08 -37.73 -0.34 -11.23 16 14 H 0.09 2.00 7.90 -52.49 -0.41 1.58 16 15 C 0.07 1.71 5.18 -17.34 -0.09 1.62 16 16 N -0.79 -18.59 10.92 55.55 0.61 -17.99 16 17 Si 0.91 17.21 29.59 -169.99 -5.03 12.18 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 21 C -0.11 -2.66 8.16 -38.23 -0.31 -2.97 16 22 C -0.10 -1.88 9.45 -39.19 -0.37 -2.25 16 23 C 0.02 0.28 7.42 -38.68 -0.29 -0.01 16 24 O -0.22 -3.47 10.77 3.57 0.04 -3.43 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.14 2.59 6.22 -52.48 -0.33 2.26 16 30 H 0.12 2.42 6.18 -52.48 -0.32 2.09 16 31 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 32 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 33 H 0.14 3.21 4.41 -52.48 -0.23 2.98 16 34 H 0.14 2.26 6.20 -52.48 -0.33 1.93 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -28.57 297.59 -7.70 -36.27 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -2.87 Total: 7.17 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -4.71 Total: -19.36 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.38 Total: -37.31 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.57 -7.70 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243959563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.221 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds