Wall clock time and date at job start Tue Mar 31 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29935 * 124.84446 * 2 1 4 4 C 1.36012 * 108.82925 * 180.02562 * 3 2 1 5 5 C 1.39721 * 133.65759 * 180.02562 * 4 3 2 6 6 C 1.36434 * 120.00364 * 179.97438 * 5 4 3 7 7 C 1.39788 * 120.44383 * 0.24045 * 6 5 4 8 8 C 1.48355 * 119.89755 * 179.72413 * 7 6 5 9 9 C 1.39741 * 120.41451 * 179.72318 * 8 7 6 10 10 N 1.31902 * 121.14701 * 179.71357 * 9 8 7 11 11 C 1.31522 * 122.12422 * 0.54729 * 10 9 8 12 12 C 1.40780 * 120.67045 * 359.74459 * 11 10 9 13 13 C 1.41441 * 120.60004 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00126 * 23.51055 * 13 12 11 15 15 C 1.39935 * 119.99912 * 203.50468 * 13 12 11 16 16 N 1.30833 * 119.99944 * 17.56067 * 15 13 12 17 17 Si 1.86796 * 120.00245 * 197.56224 * 15 13 12 18 18 H 1.48503 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47364 * 119.99890 * 17 15 13 20 20 H 1.48501 * 109.47018 * 240.00458 * 17 15 13 21 21 C 1.39172 * 120.41468 * 359.97438 * 8 7 6 22 22 C 1.39067 * 120.20277 * 359.47953 * 7 6 5 23 23 C 1.38456 * 119.64188 * 0.53568 * 22 7 6 24 24 O 1.34232 * 124.85163 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47726 * 269.98033 * 1 2 3 26 26 H 1.09001 * 109.46981 * 29.98031 * 1 2 3 27 27 H 1.09005 * 109.46930 * 149.97523 * 1 2 3 28 28 H 1.07990 * 119.99581 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.77853 * 179.97438 * 6 5 4 30 30 H 1.08006 * 119.42480 * 359.97159 * 9 8 7 31 31 H 1.08000 * 119.66605 * 179.71704 * 11 10 9 32 32 H 0.97002 * 120.00086 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.95296 * 0.03387 * 21 8 7 34 34 H 1.08004 * 120.18116 * 180.26069 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2493 1.0664 0.0000 4 6 3.5567 0.6911 -0.0006 5 6 4.7627 1.3966 -0.0004 6 6 5.9482 0.7213 -0.0006 7 6 5.9671 -0.6764 -0.0061 8 6 7.2631 -1.3984 -0.0125 9 6 7.2946 -2.7955 -0.0121 10 7 8.4385 -3.4521 -0.0234 11 6 9.5996 -2.8342 -0.0248 12 6 9.6647 -1.4280 -0.0195 13 6 10.9141 -0.7650 -0.0204 14 1 11.7921 -1.2681 -0.3980 15 6 11.0127 0.5427 0.4677 16 7 10.0656 1.0306 1.2271 17 14 12.4964 1.5918 0.0350 18 1 13.4181 0.8128 -0.8303 19 1 12.0482 2.8090 -0.6880 20 1 13.2029 1.9874 1.2799 21 6 8.4627 -0.6929 -0.0136 22 6 4.7748 -1.3923 -0.0004 23 6 3.5683 -0.7130 -0.0006 24 8 2.2740 -1.1016 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.7564 2.4765 -0.0001 29 1 6.8783 1.2703 -0.0009 30 1 6.3661 -3.3472 -0.0067 31 1 10.5123 -3.4116 -0.0295 32 1 10.1341 1.9370 1.5658 33 1 8.4719 0.3871 -0.0093 34 1 4.7898 -2.4722 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243959563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:11 Heat of formation + Delta-G solvation = 37.601373 kcal Electronic energy + Delta-G solvation = -20117.716089 eV Core-core repulsion = 16980.466701 eV Total energy + Delta-G solvation = -3137.249388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.28545 -40.59378 -38.89812 -36.07656 -35.90153 -33.68614 -32.45229 -32.03333 -31.12396 -28.29064 -27.58733 -24.85992 -24.16835 -23.28658 -22.55114 -21.96696 -19.31464 -18.90675 -18.31540 -17.91745 -17.46083 -16.98295 -16.62277 -15.88716 -15.28296 -14.95673 -14.83845 -14.56111 -14.51212 -14.10781 -14.01882 -13.54151 -13.45748 -13.38106 -13.15095 -13.04965 -12.79870 -12.45835 -12.39439 -12.19635 -11.74421 -11.57879 -11.22321 -10.53249 -10.07018 -9.92194 -9.78814 -8.89165 -8.68775 -6.47563 -0.60973 0.12095 0.72923 0.96835 1.41465 1.42908 1.45499 1.54477 1.56738 2.18657 2.52737 2.79037 2.82111 3.42188 3.66545 3.69191 3.93106 3.99481 4.07068 4.18710 4.29602 4.57214 4.61027 4.64255 4.69616 4.82223 4.85354 4.90526 5.00798 5.11278 5.16418 5.26999 5.30574 5.39013 5.57749 5.76108 5.87255 5.97185 6.44236 6.53169 6.71228 6.73483 7.63832 8.21469 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.004240 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.531556 B = 6602.733454 C = 7611.323668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.246 3.754 3 N -0.508 5.508 4 C -0.001 4.001 5 C -0.061 4.061 6 C -0.109 4.109 7 C -0.001 4.001 8 C -0.090 4.090 9 C -0.033 4.033 10 N -0.479 5.479 11 C -0.036 4.036 12 C 0.037 3.963 13 C -0.475 4.475 14 H 0.088 0.912 15 C 0.039 3.961 16 N -0.813 5.813 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.266 1.266 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.004 4.004 24 O -0.220 6.220 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.294 0.706 33 H 0.132 0.868 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 3.285 -1.747 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.035 3.965 3 N -0.239 5.239 4 C -0.112 4.112 5 C -0.080 4.080 6 C -0.128 4.128 7 C -0.003 4.003 8 C -0.092 4.092 9 C -0.191 4.191 10 N -0.186 5.186 11 C -0.196 4.196 12 C 0.033 3.967 13 C -0.504 4.504 14 H 0.106 0.894 15 C -0.178 4.178 16 N -0.438 5.438 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.187 1.187 20 H -0.191 1.191 21 C -0.158 4.158 22 C -0.111 4.111 23 C -0.054 4.054 24 O -0.113 6.113 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.149 0.851 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.011 3.184 -1.606 14.458 hybrid contribution 1.184 0.545 0.067 1.305 sum -12.827 3.729 -1.539 13.447 Atomic orbital electron populations 1.20769 0.76732 1.07242 1.06921 1.27705 0.98391 0.77371 0.93049 1.70578 1.00715 1.30148 1.22454 1.20106 0.92763 0.91622 1.06715 1.20088 0.87861 1.01009 0.99047 1.21028 0.98578 0.93372 0.99822 1.18634 0.91169 0.93160 0.97299 1.19516 0.91956 0.94604 1.03155 1.22264 0.95662 0.90434 1.10695 1.66967 0.98999 1.41975 1.10626 1.22772 0.94676 0.92073 1.10085 1.18796 0.94686 0.92928 0.90309 1.19878 0.95145 0.98904 1.36491 0.89420 1.26799 1.00832 0.98687 0.91505 1.69812 1.34348 1.17434 1.22213 0.85093 0.77316 0.77801 0.79218 1.18021 1.18700 1.19117 1.21916 0.90674 1.00278 1.02934 1.19903 0.86328 1.00865 1.04046 1.20181 0.84084 0.94570 1.06519 1.84470 1.14877 1.36956 1.74999 0.86283 0.86311 0.86687 0.82821 0.84310 0.83357 0.84501 0.89459 0.85073 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.23 0.75 0.11 16 2 C 0.25 6.05 8.23 88.39 0.73 6.77 16 3 N -0.51 -15.63 11.33 -296.08 -3.36 -18.99 16 4 C 0.00 -0.04 7.24 39.39 0.29 0.24 16 5 C -0.06 -2.02 10.03 22.21 0.22 -1.80 16 6 C -0.11 -3.98 9.36 22.22 0.21 -3.78 16 7 C 0.00 -0.06 5.88 -20.01 -0.12 -0.17 16 8 C -0.09 -4.11 5.88 -20.00 -0.12 -4.22 16 9 C -0.03 -1.48 10.59 85.05 0.90 -0.58 16 10 N -0.48 -23.43 10.32 -192.74 -1.99 -25.42 16 11 C -0.04 -1.79 10.96 85.36 0.94 -0.85 16 12 C 0.04 1.93 5.59 -21.22 -0.12 1.81 16 13 C -0.48 -23.86 9.08 23.47 0.21 -23.64 16 14 H 0.09 4.20 7.90 -2.91 -0.02 4.18 16 15 C 0.04 1.80 5.18 85.25 0.44 2.24 16 16 N -0.81 -38.94 10.92 21.82 0.24 -38.70 16 17 Si 0.99 35.15 29.59 68.60 2.03 37.18 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 20 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 21 C -0.13 -6.61 8.16 23.15 0.19 -6.42 16 22 C -0.09 -3.29 9.45 22.52 0.21 -3.07 16 23 C 0.00 -0.13 7.42 22.85 0.17 0.04 16 24 O -0.22 -6.51 10.77 -10.14 -0.11 -6.62 16 25 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.15 4.26 8.06 -2.92 -0.02 4.24 16 29 H 0.14 5.15 6.22 -2.91 -0.02 5.14 16 30 H 0.15 5.77 6.18 -2.91 -0.02 5.75 16 31 H 0.14 6.36 8.06 -2.91 -0.02 6.33 16 32 H 0.29 12.59 8.30 -92.71 -0.77 11.82 16 33 H 0.13 6.51 4.41 -2.91 -0.01 6.50 16 34 H 0.15 4.75 6.20 -2.91 -0.02 4.73 16 Total: -1.00 -62.69 297.59 2.87 -59.82 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 1.16 Total: 26.06 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.90 Total: -33.33 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -5.11 Total: -83.10 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.11 Total: -6.62 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Total: -62.69 2.87 -59.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243959563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.422 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds