Wall clock time and date at job start Tue Mar 31 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29958 * 124.84531 * 2 1 4 4 C 1.35960 * 108.84035 * 179.97438 * 3 2 1 5 5 C 1.39762 * 133.65347 * 180.02562 * 4 3 2 6 6 C 1.36390 * 120.00860 * 180.02562 * 5 4 3 7 7 C 1.39864 * 120.44162 * 359.94863 * 6 5 4 8 8 C 1.48212 * 119.90814 * 180.02562 * 7 6 5 9 9 C 1.39966 * 119.60950 * 0.02562 * 8 7 6 10 10 C 1.38662 * 119.45815 * 180.02562 * 9 8 7 11 11 C 1.38309 * 118.69709 * 0.02562 * 10 9 8 12 12 C 1.40678 * 119.19872 * 359.97438 * 11 10 9 13 13 C 1.41361 * 119.76563 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00308 * 0.02562 * 13 12 11 15 15 C 1.40015 * 120.00241 * 180.02562 * 13 12 11 16 16 N 1.30750 * 119.99580 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47096 * 120.00048 * 17 15 13 20 20 H 1.48497 * 109.46810 * 240.00123 * 17 15 13 21 21 N 1.32255 * 119.61223 * 179.75229 * 8 7 6 22 22 C 1.39173 * 120.18955 * 0.04794 * 7 6 5 23 23 C 1.38402 * 119.63442 * 0.23462 * 22 7 6 24 24 O 1.34206 * 124.84280 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46738 * 89.96791 * 1 2 3 26 26 H 1.08995 * 109.46766 * 209.97503 * 1 2 3 27 27 H 1.08999 * 109.46593 * 329.97097 * 1 2 3 28 28 H 1.07993 * 119.99616 * 359.96964 * 5 4 3 29 29 H 1.08001 * 119.78423 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.27065 * 0.02562 * 9 8 7 31 31 H 1.07999 * 120.65109 * 180.02562 * 10 9 8 32 32 H 1.08004 * 120.40077 * 180.02562 * 11 10 9 33 33 H 0.97003 * 120.00164 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.17944 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2496 1.0666 0.0000 4 6 3.5565 0.6917 0.0006 5 6 4.7627 1.3977 0.0013 6 6 5.9480 0.7230 0.0012 7 6 5.9673 -0.6755 0.0015 8 6 7.2622 -1.3967 0.0020 9 6 8.4584 -0.6701 0.0027 10 6 9.6680 -1.3480 0.0027 11 6 9.6543 -2.7310 0.0013 12 6 8.4195 -3.4050 0.0007 13 6 8.3914 -4.8184 -0.0001 14 1 9.3158 -5.3769 0.0002 15 6 7.1652 -5.4943 -0.0013 16 7 6.0461 -4.8181 -0.0022 17 14 7.1281 -7.3619 -0.0017 18 1 8.5181 -7.8846 0.0001 19 1 6.4173 -7.8431 1.2100 20 1 6.4195 -7.8426 -1.2149 21 7 7.2736 -2.7192 0.0073 22 6 4.7741 -1.3919 0.0009 23 6 3.5682 -0.7129 -0.0050 24 8 2.2738 -1.1015 -0.0005 25 1 -0.3633 0.0006 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3632 0.8897 0.5143 28 1 4.7562 2.4776 0.0010 29 1 6.8779 1.2722 0.0014 30 1 8.4395 0.4097 0.0033 31 1 10.6026 -0.8067 0.0036 32 1 10.5803 -3.2868 0.0017 33 1 5.1966 -5.2863 -0.0035 34 1 4.7893 -2.4718 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243959871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:03 Heat of formation + Delta-G solvation = 67.489785 kcal Electronic energy + Delta-G solvation = -20342.216182 eV Core-core repulsion = 17206.262853 eV Total energy + Delta-G solvation = -3135.953329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.88636 -38.72287 -37.19417 -34.56501 -33.71643 -31.90300 -30.99176 -30.22348 -29.75412 -27.47094 -25.54491 -23.08667 -22.70720 -21.44443 -20.99352 -20.40120 -17.86097 -17.34644 -16.54738 -16.45885 -15.82432 -14.95179 -14.62502 -14.11361 -13.79742 -13.50605 -13.32524 -13.31095 -13.20756 -12.69575 -12.68097 -12.34331 -11.91692 -11.54045 -11.33343 -11.24105 -11.09809 -10.84573 -10.78583 -10.54696 -10.16838 -9.93900 -9.49839 -8.67077 -8.40547 -8.09551 -7.74541 -7.23407 -6.52206 -4.61882 0.91588 1.64240 2.42830 2.78141 2.78736 3.04724 3.05154 3.09012 3.15707 3.88364 3.98712 4.13285 4.72973 4.87989 5.10882 5.13289 5.23328 5.28294 5.56665 5.60914 5.72555 5.81933 5.83084 6.03107 6.27590 6.32981 6.41947 6.58551 6.60519 6.66614 6.74632 7.00725 7.03969 7.18704 7.22967 7.46573 7.61269 7.88582 7.91540 8.12717 8.56152 8.80799 9.92051 10.20801 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.005495 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.970660 B = 5094.223018 C = 6766.046933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.227 3.773 3 N -0.483 5.483 4 C 0.009 3.991 5 C -0.076 4.076 6 C -0.104 4.104 7 C 0.009 3.991 8 C 0.173 3.827 9 C -0.295 4.295 10 C -0.059 4.059 11 C -0.267 4.267 12 C 0.256 3.744 13 C -0.429 4.429 14 H 0.086 0.914 15 C 0.071 3.929 16 N -0.719 5.719 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.273 1.273 21 N -0.467 5.467 22 C -0.058 4.058 23 C 0.006 3.994 24 O -0.214 6.214 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.273 0.727 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.341 6.170 -0.005 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.016 3.984 3 N -0.214 5.214 4 C -0.103 4.103 5 C -0.095 4.095 6 C -0.124 4.124 7 C 0.007 3.993 8 C 0.028 3.972 9 C -0.319 4.319 10 C -0.083 4.083 11 C -0.290 4.290 12 C 0.131 3.869 13 C -0.460 4.460 14 H 0.104 0.896 15 C -0.154 4.154 16 N -0.340 5.340 17 Si 0.733 3.267 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.180 5.180 22 C -0.078 4.078 23 C -0.043 4.043 24 O -0.105 6.105 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.543 6.216 0.005 10.565 hybrid contribution 1.057 -0.999 -0.017 1.454 sum -7.486 5.217 -0.011 9.125 Atomic orbital electron populations 1.20313 0.81443 1.05147 1.04750 1.26300 0.96476 0.78788 0.96850 1.70489 1.01323 1.29129 1.20474 1.19852 0.91826 0.91549 1.07038 1.19790 0.88541 0.99600 1.01578 1.20929 0.97777 0.93584 1.00132 1.18606 0.91727 0.91799 0.97133 1.19540 0.89603 0.91512 0.96497 1.21192 0.92926 0.98314 1.19467 1.20796 0.96263 0.94303 0.96977 1.21827 0.98429 0.94000 1.14784 1.18505 0.86105 0.93700 0.88632 1.19652 0.93604 0.90013 1.42740 0.89625 1.26043 0.95331 1.00699 0.93376 1.70055 0.98193 1.36899 1.28880 0.86251 0.79635 0.82238 0.78615 1.18386 1.19798 1.19794 1.68722 1.28836 1.03845 1.16571 1.20475 0.85681 1.02870 0.98738 1.20355 0.83559 0.94219 1.06196 1.84464 1.15703 1.35796 1.74579 0.88772 0.89150 0.88102 0.85199 0.84389 0.88139 0.88240 0.88094 0.91595 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.23 3.45 8.23 -13.07 -0.11 3.34 16 3 N -0.48 -8.37 11.33 -8.64 -0.10 -8.47 16 4 C 0.01 0.17 7.24 -84.63 -0.61 -0.44 16 5 C -0.08 -1.28 10.03 -39.68 -0.40 -1.67 16 6 C -0.10 -1.83 9.34 -39.64 -0.37 -2.20 16 7 C 0.01 0.18 5.88 -104.84 -0.62 -0.43 16 8 C 0.17 4.10 6.73 -82.94 -0.56 3.54 16 9 C -0.30 -6.39 9.47 -38.78 -0.37 -6.75 16 10 C -0.06 -1.28 10.15 -39.40 -0.40 -1.68 16 11 C -0.27 -6.34 9.83 -38.63 -0.38 -6.72 16 12 C 0.26 6.78 6.55 -85.01 -0.56 6.23 16 13 C -0.43 -11.09 9.14 -37.73 -0.34 -11.44 16 14 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 15 C 0.07 1.74 5.50 -17.35 -0.10 1.64 16 16 N -0.72 -18.31 11.08 55.55 0.62 -17.69 16 17 Si 0.91 18.13 29.56 -169.99 -5.02 13.10 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 N -0.47 -12.38 6.89 -7.69 -0.05 -12.43 16 22 C -0.06 -1.25 9.58 -39.17 -0.38 -1.63 16 23 C 0.01 0.12 7.42 -38.68 -0.29 -0.16 16 24 O -0.21 -3.88 10.77 3.60 0.04 -3.85 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.14 2.08 6.13 -52.49 -0.32 1.76 16 30 H 0.10 1.85 6.15 -52.49 -0.32 1.52 16 31 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 33 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 34 H 0.17 3.94 7.14 -52.49 -0.37 3.57 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -30.06 300.72 -8.18 -38.24 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.10 Total: 5.09 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -5.09 Total: -18.53 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.06 -8.18 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243959871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.732 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds