Wall clock time and date at job start Tue Mar 31 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34238 * 122.10704 * 2 1 4 4 S 1.71069 * 109.09129 * 180.02562 * 3 2 1 5 5 C 1.76096 * 90.30301 * 0.02562 * 4 3 2 6 6 C 1.47259 * 125.54300 * 180.02562 * 5 4 3 7 7 O 1.21615 * 119.99891 * 187.37812 * 6 5 4 8 8 N 1.34773 * 119.99745 * 7.37181 * 6 5 4 9 9 C 1.46508 * 119.99855 * 185.71235 * 8 6 5 10 10 C 1.50695 * 109.46959 * 270.00313 * 9 8 6 11 11 H 1.08003 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00064 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99925 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00294 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47077 * 90.00036 * 14 12 10 16 16 H 1.48500 * 109.47146 * 210.00545 * 14 12 10 17 17 H 1.48505 * 109.46686 * 330.00114 * 14 12 10 18 18 C 1.46493 * 120.00326 * 5.71141 * 8 6 5 19 19 C 1.53002 * 109.47488 * 273.93178 * 18 8 6 20 20 C 1.53001 * 117.50056 * 243.74537 * 19 18 8 21 21 C 1.53005 * 117.49995 * 175.08608 * 19 18 8 22 22 N 1.30557 * 108.91357 * 0.26081 * 5 4 3 23 23 H 1.09004 * 109.47262 * 89.99931 * 1 2 3 24 24 H 1.09001 * 109.47194 * 209.99676 * 1 2 3 25 25 H 1.09003 * 109.47281 * 329.99822 * 1 2 3 26 26 H 1.07999 * 125.45411 * 0.02607 * 3 2 1 27 27 H 1.09007 * 109.46791 * 30.00008 * 9 8 6 28 28 H 1.09003 * 109.46950 * 150.00140 * 9 8 6 29 29 H 0.97003 * 120.00311 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47428 * 153.93051 * 18 8 6 31 31 H 1.09001 * 109.47150 * 33.93454 * 18 8 6 32 32 H 1.08995 * 115.54435 * 29.41778 * 19 18 8 33 33 H 1.09000 * 117.49550 * 0.02562 * 20 19 18 34 34 H 1.08994 * 117.49569 * 145.01875 * 20 19 18 35 35 H 1.09000 * 117.49430 * 214.97932 * 21 19 18 36 36 H 1.09004 * 117.49545 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2204 1.1371 0.0000 4 16 3.8872 0.7518 -0.0007 5 6 3.4997 -0.9660 -0.0018 6 6 4.4801 -2.0647 -0.0022 7 8 4.1056 -3.2138 -0.1382 8 7 5.7924 -1.7969 0.1479 9 6 6.7787 -2.8730 0.0226 10 6 7.0104 -3.5016 1.3724 11 1 6.4768 -3.1358 2.2372 12 6 7.9037 -4.5436 1.5034 13 7 8.5539 -4.9886 0.4504 14 14 8.1916 -5.3224 3.1768 15 1 7.2373 -6.4434 3.3717 16 1 9.5824 -5.8377 3.2503 17 1 7.9838 -4.3051 4.2385 18 6 6.2327 -0.4297 0.4363 19 6 6.3996 0.3399 -0.8755 20 6 7.8057 0.8223 -1.2375 21 6 6.7447 1.8276 -0.7828 22 7 2.2017 -1.1070 -0.0071 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.8082 2.1353 0.0004 27 1 6.4069 -3.6276 -0.6707 28 1 7.7165 -2.4642 -0.3538 29 1 9.1827 -5.7215 0.5426 30 1 7.1858 -0.4587 0.9644 31 1 5.4882 0.0683 1.0575 32 1 5.7502 0.0237 -1.6918 33 1 8.6119 0.5910 -0.5413 34 1 8.0812 0.8239 -2.2920 35 1 6.3227 2.4901 -1.5384 36 1 6.8524 2.2581 0.2128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252615413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:51 Heat of formation + Delta-G solvation = 43.265141 kcal Electronic energy + Delta-G solvation = -19742.750511 eV Core-core repulsion = 16741.190674 eV Total energy + Delta-G solvation = -3001.559837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92180 -38.98608 -37.22358 -34.55464 -32.68714 -31.75405 -28.51148 -27.69806 -26.72606 -25.20628 -22.70637 -22.29130 -21.00808 -19.69727 -19.05892 -17.74422 -16.57283 -16.54740 -15.74905 -15.20979 -15.07376 -14.68461 -14.37066 -13.97942 -13.56999 -13.17527 -12.94968 -12.73275 -12.55704 -12.41495 -12.10525 -11.59024 -11.47068 -11.32986 -10.99200 -10.75719 -10.61024 -10.43298 -10.21374 -10.09170 -9.81456 -9.69150 -9.33321 -9.08500 -8.46120 -8.42271 -7.86081 -6.07422 -4.12251 0.49420 1.42492 1.89423 2.62565 3.31340 3.35004 3.37818 3.44082 3.70311 3.88285 4.37727 4.46984 4.79808 4.95304 4.96580 5.08427 5.16452 5.26021 5.28233 5.43272 5.55871 5.57442 5.63260 5.66719 5.84111 5.86319 5.98828 6.18394 6.24388 6.29421 6.90934 7.30818 7.39148 7.78305 7.88946 8.15326 8.19588 8.75627 8.93619 9.52830 11.00757 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.005937 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.715491 B = 4715.213334 C = 5806.127668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 C -0.320 4.320 4 S 0.219 5.781 5 C 0.008 3.992 6 C 0.579 3.421 7 O -0.495 6.495 8 N -0.581 5.581 9 C 0.251 3.749 10 C -0.530 4.530 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.127 3.873 19 C -0.182 4.182 20 C -0.164 4.164 21 C -0.175 4.175 22 N -0.408 5.408 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.172 0.828 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 17.664 -2.117 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.460 4.460 4 S 0.477 5.523 5 C -0.269 4.269 6 C 0.360 3.640 7 O -0.369 6.369 8 N -0.313 5.313 9 C 0.133 3.867 10 C -0.568 4.568 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.001 3.999 19 C -0.203 4.203 20 C -0.201 4.201 21 C -0.213 4.213 22 N -0.125 5.125 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.190 0.810 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.258 16.909 -2.253 18.170 hybrid contribution -0.870 -0.287 0.866 1.261 sum -7.128 16.622 -1.387 18.139 Atomic orbital electron populations 1.20368 0.87665 1.03096 1.02701 1.20278 0.98576 0.86279 1.03502 1.27093 1.02523 1.04084 1.12281 1.84895 1.00596 1.03561 1.63252 1.28039 0.94277 0.95913 1.08667 1.16769 0.81571 0.86182 0.79432 1.90835 1.78212 1.19673 1.48167 1.48091 1.05527 1.09563 1.68153 1.19417 0.85350 0.83911 0.98036 1.21410 1.23883 1.17358 0.94180 0.92283 1.24907 0.95580 0.96330 0.97058 1.69925 1.27166 1.27141 1.28978 0.86491 0.77324 0.79717 0.83864 1.20470 1.21127 1.19895 1.21377 1.01908 0.82317 0.94331 1.22881 1.00522 0.96405 1.00506 1.23041 0.92100 1.02725 1.02281 1.22972 1.03890 0.91422 1.02980 1.66481 1.03849 1.30286 1.11880 0.90932 0.90631 0.91054 0.81023 0.93588 0.94081 0.92633 0.87784 0.90923 0.87428 0.88140 0.88841 0.88728 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.28 36.00 0.37 -0.49 16 2 C 0.05 0.75 6.68 -84.49 -0.56 0.18 16 3 C -0.32 -3.90 10.82 29.32 0.32 -3.58 16 4 S 0.22 2.83 15.29 -107.50 -1.64 1.18 16 5 C 0.01 0.15 7.19 -14.43 -0.10 0.05 16 6 C 0.58 13.04 7.63 -12.60 -0.10 12.94 16 7 O -0.50 -13.42 16.71 5.26 0.09 -13.34 16 8 N -0.58 -12.28 2.46 -176.39 -0.43 -12.72 16 9 C 0.25 6.38 5.10 -5.19 -0.03 6.36 16 10 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 11 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 14 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.13 2.00 5.20 -4.04 -0.02 1.98 16 19 C -0.18 -2.37 3.67 -90.61 -0.33 -2.71 16 20 C -0.16 -1.88 10.18 -26.69 -0.27 -2.15 16 21 C -0.17 -1.69 9.46 -26.69 -0.25 -1.94 16 22 N -0.41 -7.70 10.57 -7.69 -0.08 -7.78 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 26 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 28 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 1.64 7.78 -51.93 -0.40 1.24 16 31 H 0.07 1.05 4.93 -26.27 -0.13 0.92 16 32 H 0.11 1.51 7.67 -51.93 -0.40 1.11 16 33 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -33.33 317.23 -7.64 -40.97 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.66 Total: -1.71 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.40 Total: -2.76 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.22 Total: -45.80 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.64 Total: 1.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.33 -7.64 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252615413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.231 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds