Wall clock time and date at job start Tue Mar 31 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34238 * 122.10704 * 2 1 4 4 S 1.71069 * 109.09129 * 180.02562 * 3 2 1 5 5 C 1.76096 * 90.30301 * 0.02562 * 4 3 2 6 6 C 1.47259 * 125.54300 * 180.02562 * 5 4 3 7 7 O 1.21615 * 119.99891 * 187.37812 * 6 5 4 8 8 N 1.34773 * 119.99745 * 7.37181 * 6 5 4 9 9 C 1.46508 * 119.99855 * 185.71235 * 8 6 5 10 10 C 1.50695 * 109.46959 * 270.00313 * 9 8 6 11 11 H 1.08003 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00064 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99925 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00294 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47077 * 90.00036 * 14 12 10 16 16 H 1.48500 * 109.47146 * 210.00545 * 14 12 10 17 17 H 1.48505 * 109.46686 * 330.00114 * 14 12 10 18 18 C 1.46493 * 120.00326 * 5.71141 * 8 6 5 19 19 C 1.53002 * 109.47488 * 273.93178 * 18 8 6 20 20 C 1.53001 * 117.50056 * 243.74537 * 19 18 8 21 21 C 1.53005 * 117.49995 * 175.08608 * 19 18 8 22 22 N 1.30557 * 108.91357 * 0.26081 * 5 4 3 23 23 H 1.09004 * 109.47262 * 89.99931 * 1 2 3 24 24 H 1.09001 * 109.47194 * 209.99676 * 1 2 3 25 25 H 1.09003 * 109.47281 * 329.99822 * 1 2 3 26 26 H 1.07999 * 125.45411 * 0.02607 * 3 2 1 27 27 H 1.09007 * 109.46791 * 30.00008 * 9 8 6 28 28 H 1.09003 * 109.46950 * 150.00140 * 9 8 6 29 29 H 0.97003 * 120.00311 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47428 * 153.93051 * 18 8 6 31 31 H 1.09001 * 109.47150 * 33.93454 * 18 8 6 32 32 H 1.08995 * 115.54435 * 29.41778 * 19 18 8 33 33 H 1.09000 * 117.49550 * 0.02562 * 20 19 18 34 34 H 1.08994 * 117.49569 * 145.01875 * 20 19 18 35 35 H 1.09000 * 117.49430 * 214.97932 * 21 19 18 36 36 H 1.09004 * 117.49545 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2204 1.1371 0.0000 4 16 3.8872 0.7518 -0.0007 5 6 3.4997 -0.9660 -0.0018 6 6 4.4801 -2.0647 -0.0022 7 8 4.1056 -3.2138 -0.1382 8 7 5.7924 -1.7969 0.1479 9 6 6.7787 -2.8730 0.0226 10 6 7.0104 -3.5016 1.3724 11 1 6.4768 -3.1358 2.2372 12 6 7.9037 -4.5436 1.5034 13 7 8.5539 -4.9886 0.4504 14 14 8.1916 -5.3224 3.1768 15 1 7.2373 -6.4434 3.3717 16 1 9.5824 -5.8377 3.2503 17 1 7.9838 -4.3051 4.2385 18 6 6.2327 -0.4297 0.4363 19 6 6.3996 0.3399 -0.8755 20 6 7.8057 0.8223 -1.2375 21 6 6.7447 1.8276 -0.7828 22 7 2.2017 -1.1070 -0.0071 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.8082 2.1353 0.0004 27 1 6.4069 -3.6276 -0.6707 28 1 7.7165 -2.4642 -0.3538 29 1 9.1827 -5.7215 0.5426 30 1 7.1858 -0.4587 0.9644 31 1 5.4882 0.0683 1.0575 32 1 5.7502 0.0237 -1.6918 33 1 8.6119 0.5910 -0.5413 34 1 8.0812 0.8239 -2.2920 35 1 6.3227 2.4901 -1.5384 36 1 6.8524 2.2581 0.2128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252615413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:50 Heat of formation + Delta-G solvation = 20.556294 kcal Electronic energy + Delta-G solvation = -19743.735241 eV Core-core repulsion = 16741.190674 eV Total energy + Delta-G solvation = -3002.544567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29564 -40.37604 -38.45837 -36.24167 -34.71050 -32.91871 -30.27053 -28.75854 -28.10972 -26.89170 -24.46995 -23.19337 -22.17277 -21.01950 -20.30559 -19.11108 -18.64902 -17.89206 -17.35524 -16.61128 -16.45750 -16.22765 -15.54780 -15.38556 -14.93385 -14.41129 -14.31954 -14.19831 -14.10876 -13.46881 -13.33392 -13.22547 -12.96830 -12.72689 -12.62020 -12.25800 -12.25541 -11.83516 -11.72450 -11.46062 -11.19158 -11.14337 -10.65763 -10.60623 -10.40403 -9.64109 -9.52492 -8.24101 -6.38209 -0.72475 0.22733 0.81607 1.34618 1.37216 1.40635 1.49385 1.86879 2.20543 2.39061 2.89705 3.06044 3.19535 3.70204 3.84648 3.94047 4.11925 4.22147 4.28538 4.34412 4.44361 4.70879 4.76240 4.80311 4.87752 4.91133 4.96101 5.10290 5.16309 5.24076 5.32210 5.38269 5.47492 5.73887 6.01557 6.38133 6.68323 6.75146 7.10826 7.32960 8.83509 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.005937 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.715491 B = 4715.213334 C = 5806.127668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.292 4.292 4 S 0.321 5.679 5 C -0.062 4.062 6 C 0.572 3.428 7 O -0.568 6.568 8 N -0.583 5.583 9 C 0.268 3.732 10 C -0.546 4.546 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.965 3.035 15 H -0.284 1.284 16 H -0.271 1.271 17 H -0.262 1.262 18 C 0.123 3.877 19 C -0.208 4.208 20 C -0.172 4.172 21 C -0.137 4.137 22 N -0.445 5.445 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.221 0.779 27 H -0.001 1.001 28 H 0.040 0.960 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 21.950 -1.159 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.432 4.432 4 S 0.579 5.421 5 C -0.335 4.335 6 C 0.357 3.643 7 O -0.447 6.447 8 N -0.314 5.314 9 C 0.148 3.852 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.564 5.564 14 Si 0.789 3.211 15 H -0.210 1.210 16 H -0.196 1.196 17 H -0.186 1.186 18 C 0.000 4.000 19 C -0.229 4.229 20 C -0.209 4.209 21 C -0.175 4.175 22 N -0.164 5.164 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.238 0.762 27 H 0.017 0.983 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.589 21.250 -1.290 22.285 hybrid contribution -0.790 -1.446 0.513 1.725 sum -7.379 19.804 -0.777 21.148 Atomic orbital electron populations 1.20485 0.85368 1.04069 1.03683 1.20809 1.00212 0.85980 1.04598 1.27756 1.02164 1.05480 1.07847 1.84269 1.00325 0.97483 1.60050 1.27114 0.93741 0.98348 1.14286 1.17376 0.82327 0.86715 0.77869 1.90756 1.79561 1.22937 1.51473 1.47998 1.04781 1.10875 1.67721 1.18867 0.85881 0.84353 0.96105 1.21656 1.23977 1.18146 0.94713 0.93038 1.25782 0.95202 0.96663 1.00972 1.70032 1.27636 1.27620 1.31071 0.85457 0.77585 0.78616 0.79411 1.21006 1.19576 1.18574 1.21654 1.02135 0.79831 0.96430 1.22688 1.02181 0.99325 0.98691 1.23118 0.91386 1.03628 1.02753 1.23178 1.00523 0.89047 1.04715 1.66440 1.04594 1.33436 1.11959 0.89940 0.92122 0.87627 0.76231 0.98320 0.94162 0.92263 0.87963 0.89280 0.88602 0.88584 0.88246 0.86193 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.28 71.23 0.73 -0.77 16 2 C 0.02 0.58 6.68 41.81 0.28 0.86 16 3 C -0.29 -5.77 10.82 66.91 0.72 -5.05 16 4 S 0.32 7.27 15.29 -56.49 -0.86 6.41 16 5 C -0.06 -2.38 7.19 87.26 0.63 -1.75 16 6 C 0.57 27.65 7.63 86.62 0.66 28.31 16 7 O -0.57 -33.82 16.71 -4.08 -0.07 -33.89 16 8 N -0.58 -26.08 2.46 -830.23 -2.04 -28.12 16 9 C 0.27 14.62 5.10 85.63 0.44 15.06 16 10 C -0.55 -31.89 9.39 25.60 0.24 -31.65 16 11 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.77 5.46 84.65 0.46 1.24 16 13 N -0.92 -55.70 13.29 21.45 0.28 -55.42 16 14 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 18 C 0.12 3.87 5.20 86.38 0.45 4.32 16 19 C -0.21 -5.10 3.67 -10.79 -0.04 -5.14 16 20 C -0.17 -3.59 10.18 30.62 0.31 -3.28 16 21 C -0.14 -2.05 9.46 30.62 0.29 -1.76 16 22 N -0.45 -17.11 10.57 -178.24 -1.88 -18.99 16 23 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 26 H 0.22 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.00 -0.08 7.51 -2.38 -0.02 -0.10 16 28 H 0.04 2.16 8.07 -2.39 -0.02 2.14 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.10 3.21 7.78 -2.39 -0.02 3.19 16 31 H 0.09 2.42 4.93 -18.70 -0.09 2.33 16 32 H 0.10 2.63 7.67 -2.39 -0.02 2.61 16 33 H 0.10 2.10 8.03 -2.39 -0.02 2.08 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.35 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -80.67 317.23 3.63 -77.04 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.00 Total: 5.25 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.17 Total: 0.39 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.64 Total: -102.53 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.07 Total: -33.89 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -0.86 Total: 6.41 kcal Total: -80.67 3.63 -77.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252615413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.600 kcal (2) G-P(sol) polarization free energy of solvation -80.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds