Wall clock time and date at job start Tue Mar 31 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47493 * 355.04912 * 3 2 1 5 5 C 1.48289 * 111.00156 * 193.44532 * 4 3 2 6 6 C 1.56006 * 105.06956 * 122.54679 * 5 4 3 7 7 H 1.08999 * 116.21879 * 159.74371 * 6 5 4 8 8 C 1.57066 * 99.67962 * 32.87551 * 6 5 4 9 9 C 1.49704 * 111.00269 * 311.04648 * 4 3 2 10 10 H 1.09004 * 116.16237 * 75.28142 * 9 4 3 11 11 C 1.56022 * 104.08035 * 306.12273 * 9 4 3 12 12 N 1.47865 * 105.11477 * 288.80075 * 11 9 4 13 13 C 1.34772 * 126.92904 * 181.96216 * 12 11 9 14 14 O 1.21283 * 119.99962 * 174.79947 * 13 12 11 15 15 C 1.50699 * 119.99599 * 354.79213 * 13 12 11 16 16 S 1.81004 * 109.47114 * 185.17223 * 15 13 12 17 17 C 1.76193 * 100.00147 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00321 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99734 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99823 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47191 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47276 * 119.99964 * 21 19 17 24 24 H 1.48498 * 109.47222 * 240.00037 * 21 19 17 25 25 H 4.40886 * 5.52145 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47017 * 235.04825 * 3 2 1 27 27 H 1.09003 * 109.46959 * 115.05097 * 3 2 1 28 28 H 1.09006 * 110.32175 * 3.64433 * 5 4 3 29 29 H 1.09007 * 110.32369 * 241.44815 * 5 4 3 30 30 H 1.09005 * 112.35742 * 64.13906 * 8 6 5 31 31 H 1.08995 * 112.36129 * 191.55823 * 8 6 5 32 32 H 1.09001 * 110.30946 * 169.89041 * 11 9 4 33 33 H 1.09003 * 110.31404 * 47.71297 * 11 9 4 34 34 H 1.08996 * 109.47552 * 305.17432 * 15 13 12 35 35 H 1.08999 * 109.47172 * 65.18124 * 15 13 12 36 36 H 0.96998 * 120.00139 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3789 0.1195 5 6 4.5830 -1.4024 0.4447 6 6 4.6865 -2.2108 1.7750 7 1 5.6640 -2.6339 2.0065 8 6 3.5007 -3.2190 1.5644 9 6 2.4503 -2.0970 1.2397 10 1 1.4248 -2.4143 1.0505 11 6 2.6694 -1.1701 2.4754 12 7 4.1058 -1.2970 2.8028 13 6 4.7589 -0.7071 3.8235 14 8 5.9236 -0.9730 4.0326 15 6 4.0419 0.2829 4.7049 16 16 5.2155 1.0079 5.8767 17 6 4.1403 2.0932 6.7546 18 1 3.0944 2.1467 6.4913 19 6 4.6378 2.8795 7.7846 20 7 5.9128 2.8147 8.1053 21 14 3.4978 4.0296 8.7158 22 1 2.1232 3.9167 8.1654 23 1 3.4877 3.6593 10.1538 24 1 3.9764 5.4276 8.5680 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0090 0.5896 0.8423 27 1 3.0091 0.4360 -0.9310 28 1 4.9553 -0.3880 0.5881 29 1 5.1409 -1.9029 -0.3468 30 1 3.6691 -3.8864 0.7191 31 1 3.2550 -3.7661 2.4745 32 1 2.0591 -1.5064 3.3136 33 1 2.4289 -0.1377 2.2214 34 1 3.6095 1.0713 4.0889 35 1 3.2490 -0.2262 5.2529 36 1 6.2603 3.3639 8.8254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268926527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:35 Heat of formation + Delta-G solvation = 69.484952 kcal Electronic energy + Delta-G solvation = -19491.956954 eV Core-core repulsion = 16491.534093 eV Total energy + Delta-G solvation = -3000.422861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37500 -38.27793 -34.99768 -32.98928 -32.45447 -31.00181 -29.96644 -28.74062 -26.18137 -25.53503 -24.85081 -21.60619 -20.86733 -18.89200 -18.33275 -17.78471 -16.87726 -16.65360 -15.88457 -15.34475 -14.83108 -14.67905 -14.51306 -13.97412 -13.54225 -13.43350 -12.96743 -12.67137 -12.60450 -12.45824 -12.03748 -11.87180 -11.72037 -11.39770 -11.34140 -11.08977 -11.04140 -10.78279 -10.71208 -10.45276 -9.83385 -9.50498 -9.09860 -8.81679 -8.39132 -8.26858 -6.53549 -6.24342 -3.95269 2.47077 2.62548 2.78008 2.98236 3.19696 3.23182 3.29023 3.54652 3.68996 4.04514 4.09544 4.17760 4.30945 4.55442 4.75759 4.87824 5.01575 5.10959 5.16958 5.18897 5.32281 5.45003 5.50160 5.57053 5.61546 5.63087 5.69367 5.72132 5.76870 5.85748 6.09529 6.23725 6.40899 6.60628 7.38680 7.57238 7.62287 8.32885 8.48865 9.21109 10.83191 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.004392 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.794144 B = 6373.077555 C = 7237.030225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.146 3.854 4 N -0.511 5.511 5 C 0.024 3.976 6 C 0.113 3.887 7 H 0.130 0.870 8 C -0.133 4.133 9 C 0.056 3.944 10 H 0.132 0.868 11 C 0.066 3.934 12 N -0.630 5.630 13 C 0.552 3.448 14 O -0.514 6.514 15 C -0.146 4.146 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.218 0.782 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 -9.539 -16.934 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.183 4.183 3 C 0.020 3.980 4 N -0.235 5.235 5 C -0.104 4.104 6 C 0.009 3.991 7 H 0.147 0.853 8 C -0.172 4.172 9 C -0.052 4.052 10 H 0.150 0.850 11 C -0.059 4.059 12 N -0.369 5.369 13 C 0.341 3.659 14 O -0.388 6.388 15 C -0.297 4.297 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.235 0.765 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.626 -9.963 -16.974 21.108 hybrid contribution -2.281 1.583 1.230 3.037 sum -9.908 -8.380 -15.744 20.402 Atomic orbital electron populations 1.24893 0.95850 0.99443 1.01061 1.22760 0.94076 1.01063 1.00431 1.19390 0.85048 0.90916 1.02679 1.65157 1.03640 1.13086 1.41585 1.23778 0.88689 1.01153 0.96806 1.23979 0.98644 0.89871 0.86573 0.85250 1.23939 0.94298 0.96366 1.02555 1.24661 0.99172 0.93750 0.87646 0.85018 1.23189 0.82824 1.01094 0.98748 1.49343 1.09483 1.48862 1.29194 1.20033 0.86639 0.80398 0.78849 1.90709 1.16447 1.62325 1.69287 1.23504 1.04775 0.99768 1.01630 1.85381 1.11280 1.50264 1.36384 1.22890 0.97014 1.27254 1.21171 0.90934 1.24990 0.95565 0.96719 0.96244 1.70025 1.12588 1.38787 1.28847 0.86113 0.80159 0.79900 0.79315 1.19633 1.20499 1.20520 0.76537 0.91346 0.88212 0.91374 0.88815 0.88707 0.89560 0.90899 0.90515 0.89719 0.89317 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.18 -1.85 11.48 -37.13 -0.43 -2.28 16 3 C 0.15 1.45 4.88 -6.62 -0.03 1.42 16 4 N -0.51 -5.03 5.41 -220.21 -1.19 -6.22 16 5 C 0.02 0.25 6.25 -1.45 -0.01 0.24 16 6 C 0.11 1.31 5.24 -62.57 -0.33 0.98 16 7 H 0.13 1.56 8.03 -51.93 -0.42 1.14 16 8 C -0.13 -1.20 6.80 -22.31 -0.15 -1.35 16 9 C 0.06 0.52 4.29 -62.31 -0.27 0.26 16 10 H 0.13 1.09 7.86 -51.93 -0.41 0.69 16 11 C 0.07 0.77 5.49 -1.68 -0.01 0.76 16 12 N -0.63 -9.13 2.95 -156.80 -0.46 -9.59 16 13 C 0.55 10.74 7.90 -10.99 -0.09 10.65 16 14 O -0.51 -11.87 16.21 5.55 0.09 -11.78 16 15 C -0.15 -3.07 5.45 36.01 0.20 -2.87 16 16 S -0.06 -1.64 20.58 -107.50 -2.21 -3.85 16 17 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.22 1.18 7.80 -54.10 -0.42 0.76 16 26 H 0.07 0.76 6.00 -51.93 -0.31 0.44 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.93 5.09 -51.93 -0.26 0.67 16 34 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -34.19 316.66 -8.36 -42.55 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.72 Total: -0.47 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.35 Total: -6.37 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.92 Total: -41.29 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.19 -8.36 -42.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.036 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds