Wall clock time and date at job start Tue Mar 31 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47493 * 355.04912 * 3 2 1 5 5 C 1.48289 * 111.00156 * 193.44532 * 4 3 2 6 6 C 1.56006 * 105.06956 * 122.54679 * 5 4 3 7 7 H 1.08999 * 116.21879 * 159.74371 * 6 5 4 8 8 C 1.57066 * 99.67962 * 32.87551 * 6 5 4 9 9 C 1.49704 * 111.00269 * 311.04648 * 4 3 2 10 10 H 1.09004 * 116.16237 * 75.28142 * 9 4 3 11 11 C 1.56022 * 104.08035 * 306.12273 * 9 4 3 12 12 N 1.47865 * 105.11477 * 288.80075 * 11 9 4 13 13 C 1.34772 * 126.92904 * 181.96216 * 12 11 9 14 14 O 1.21283 * 119.99962 * 174.79947 * 13 12 11 15 15 C 1.50699 * 119.99599 * 354.79213 * 13 12 11 16 16 S 1.81004 * 109.47114 * 185.17223 * 15 13 12 17 17 C 1.76193 * 100.00147 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00321 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99734 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99823 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47191 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47276 * 119.99964 * 21 19 17 24 24 H 1.48498 * 109.47222 * 240.00037 * 21 19 17 25 25 H 4.40886 * 5.52145 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47017 * 235.04825 * 3 2 1 27 27 H 1.09003 * 109.46959 * 115.05097 * 3 2 1 28 28 H 1.09006 * 110.32175 * 3.64433 * 5 4 3 29 29 H 1.09007 * 110.32369 * 241.44815 * 5 4 3 30 30 H 1.09005 * 112.35742 * 64.13906 * 8 6 5 31 31 H 1.08995 * 112.36129 * 191.55823 * 8 6 5 32 32 H 1.09001 * 110.30946 * 169.89041 * 11 9 4 33 33 H 1.09003 * 110.31404 * 47.71297 * 11 9 4 34 34 H 1.08996 * 109.47552 * 305.17432 * 15 13 12 35 35 H 1.08999 * 109.47172 * 65.18124 * 15 13 12 36 36 H 0.96998 * 120.00139 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3789 0.1195 5 6 4.5830 -1.4024 0.4447 6 6 4.6865 -2.2108 1.7750 7 1 5.6640 -2.6339 2.0065 8 6 3.5007 -3.2190 1.5644 9 6 2.4503 -2.0970 1.2397 10 1 1.4248 -2.4143 1.0505 11 6 2.6694 -1.1701 2.4754 12 7 4.1058 -1.2970 2.8028 13 6 4.7589 -0.7071 3.8235 14 8 5.9236 -0.9730 4.0326 15 6 4.0419 0.2829 4.7049 16 16 5.2155 1.0079 5.8767 17 6 4.1403 2.0932 6.7546 18 1 3.0944 2.1467 6.4913 19 6 4.6378 2.8795 7.7846 20 7 5.9128 2.8147 8.1053 21 14 3.4978 4.0296 8.7158 22 1 2.1232 3.9167 8.1654 23 1 3.4877 3.6593 10.1538 24 1 3.9764 5.4276 8.5680 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0090 0.5896 0.8423 27 1 3.0091 0.4360 -0.9310 28 1 4.9553 -0.3880 0.5881 29 1 5.1409 -1.9029 -0.3468 30 1 3.6691 -3.8864 0.7191 31 1 3.2550 -3.7661 2.4745 32 1 2.0591 -1.5064 3.3136 33 1 2.4289 -0.1377 2.2214 34 1 3.6095 1.0713 4.0889 35 1 3.2490 -0.2262 5.2529 36 1 6.2603 3.3639 8.8254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268926527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:35 Heat of formation + Delta-G solvation = 45.542397 kcal Electronic energy + Delta-G solvation = -19492.995182 eV Core-core repulsion = 16491.534093 eV Total energy + Delta-G solvation = -3001.461088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.34790 -39.73704 -35.92633 -34.63416 -34.00118 -32.00892 -30.87087 -30.19382 -27.72525 -26.96140 -25.88768 -22.65728 -21.79289 -20.22637 -19.56066 -19.00621 -18.31425 -17.62623 -16.95973 -16.91318 -16.49157 -16.16181 -15.91244 -15.26008 -14.74037 -14.53751 -14.25864 -14.09864 -13.67249 -13.50169 -13.29376 -13.21504 -12.94606 -12.86305 -12.66200 -12.48328 -12.29132 -12.14784 -11.75572 -11.43891 -11.20004 -11.19157 -11.04640 -10.35918 -9.89771 -9.35939 -8.73802 -8.39257 -6.18678 1.16084 1.38647 1.39429 1.46884 1.53525 1.76119 1.90674 1.95948 2.22551 2.90481 2.95025 3.13399 3.29604 3.33405 3.46874 3.72234 3.73347 3.91102 4.07464 4.16640 4.28270 4.34060 4.37949 4.51738 4.59982 4.68957 4.81383 4.83962 4.93927 4.97930 5.08520 5.20195 5.36871 5.61591 5.79037 6.15168 6.29815 6.71021 7.00619 7.01903 8.70417 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.004392 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.794144 B = 6373.077555 C = 7237.030225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.221 4.221 3 C 0.148 3.852 4 N -0.506 5.506 5 C 0.031 3.969 6 C 0.098 3.902 7 H 0.121 0.879 8 C -0.118 4.118 9 C 0.068 3.932 10 H 0.153 0.847 11 C 0.058 3.942 12 N -0.621 5.621 13 C 0.551 3.449 14 O -0.562 6.562 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.272 1.272 25 H 0.247 0.753 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -10.055 -18.207 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.221 4.221 3 C 0.021 3.979 4 N -0.230 5.230 5 C -0.098 4.098 6 C -0.004 4.004 7 H 0.139 0.861 8 C -0.156 4.156 9 C -0.040 4.040 10 H 0.171 0.829 11 C -0.065 4.065 12 N -0.357 5.357 13 C 0.339 3.661 14 O -0.440 6.440 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.263 0.737 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.575 -10.505 -18.302 23.604 hybrid contribution -1.442 1.677 1.491 2.668 sum -12.017 -8.828 -16.811 22.471 Atomic orbital electron populations 1.25665 0.96610 0.97738 0.99362 1.22932 0.94473 1.02673 1.02018 1.19324 0.85579 0.90627 1.02338 1.65231 1.03198 1.13162 1.41369 1.23756 0.89377 1.00133 0.96519 1.24299 0.99513 0.90591 0.86018 0.86072 1.23924 0.92183 0.95843 1.03634 1.24775 1.00247 0.92988 0.86021 0.82948 1.23453 0.80837 1.01872 1.00359 1.49267 1.10936 1.47659 1.27799 1.19692 0.86049 0.80538 0.79806 1.90684 1.18269 1.64053 1.70989 1.23288 1.03051 1.00328 1.00444 1.85524 1.15494 1.51530 1.39142 1.23199 0.97208 1.27569 1.21645 0.90221 1.26128 0.97310 0.98383 0.97086 1.70180 1.14852 1.39960 1.29637 0.84894 0.78090 0.77214 0.77674 1.18193 1.19680 1.19715 0.73687 0.93086 0.87551 0.93154 0.86576 0.86296 0.89296 0.90103 0.90841 0.88504 0.88021 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 19.25 74.32 1.43 -1.11 16 2 C -0.22 -3.98 11.48 31.12 0.36 -3.62 16 3 C 0.15 2.74 4.88 84.50 0.41 3.16 16 4 N -0.51 -8.84 5.41 -850.60 -4.60 -13.44 16 5 C 0.03 0.58 6.25 87.08 0.54 1.12 16 6 C 0.10 2.17 5.24 46.92 0.25 2.42 16 7 H 0.12 2.90 8.03 -2.39 -0.02 2.88 16 8 C -0.12 -1.79 6.80 33.46 0.23 -1.56 16 9 C 0.07 1.08 4.29 46.85 0.20 1.28 16 10 H 0.15 1.92 7.86 -2.39 -0.02 1.90 16 11 C 0.06 1.26 5.49 87.17 0.48 1.74 16 12 N -0.62 -17.69 2.95 -768.40 -2.26 -19.95 16 13 C 0.55 21.87 7.90 87.66 0.69 22.56 16 14 O -0.56 -27.07 16.21 -3.04 -0.05 -27.12 16 15 C -0.12 -5.10 5.45 71.24 0.39 -4.72 16 16 S -0.14 -8.21 20.58 -56.49 -1.16 -9.37 16 17 C -0.55 -31.91 9.50 67.96 0.65 -31.27 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 19 C 0.02 0.91 5.49 84.86 0.47 1.38 16 20 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 21 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H 0.25 1.70 7.80 -4.43 -0.03 1.66 16 26 H 0.05 1.12 6.00 -2.39 -0.01 1.10 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.15 7.49 -2.38 -0.02 1.13 16 29 H 0.12 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.70 5.09 -2.39 -0.01 1.69 16 34 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 35 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -76.45 316.66 1.40 -75.05 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.07 Total: 13.46 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 6.09 Total: -8.62 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -6.58 Total: -89.32 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -76.45 1.40 -75.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.594 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds