Wall clock time and date at job start Tue Mar 31 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.41573 * 2 1 4 4 C 1.38629 * 118.41671 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16626 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76103 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72624 * 359.71091 * 6 5 4 8 8 C 1.50705 * 119.61940 * 180.31088 * 7 6 5 9 9 C 1.53002 * 109.46714 * 270.26288 * 8 7 6 10 10 N 1.46496 * 109.47199 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00290 * 180.02562 * 10 9 8 12 12 O 1.21276 * 119.99784 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99805 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.46653 * 179.97438 * 13 11 10 15 15 C 1.76198 * 99.99735 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00407 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99883 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47519 * 89.99809 * 19 17 15 21 21 H 1.48504 * 109.47449 * 210.00495 * 19 17 15 22 22 H 1.48501 * 109.47009 * 330.00108 * 19 17 15 23 23 H 1.09002 * 109.47152 * 89.99975 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00076 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00057 * 1 2 3 26 26 H 1.07998 * 120.79398 * 0.02674 * 3 2 1 27 27 H 1.08004 * 120.41609 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.62281 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47404 * 30.26096 * 8 7 6 30 30 H 1.09001 * 109.47022 * 150.26856 * 8 7 6 31 31 H 1.09004 * 109.47442 * 300.00038 * 9 8 7 32 32 H 1.08997 * 109.47341 * 59.99900 * 9 8 7 33 33 H 0.97003 * 119.99941 * 359.97438 * 10 9 8 34 34 H 1.08998 * 109.47404 * 299.99520 * 13 11 10 35 35 H 1.09001 * 109.47022 * 60.00279 * 13 11 10 36 36 H 0.96999 * 120.00096 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0072 8 6 1.4540 -2.4972 0.0152 9 6 1.1977 -2.9468 -1.4246 10 7 0.4655 -4.2156 -1.4170 11 6 0.1280 -4.8060 -2.5806 12 8 0.4300 -4.2865 -3.6340 13 6 -0.6248 -6.1116 -2.5726 14 16 -0.9281 -6.6434 -4.2760 15 6 -1.7965 -8.1470 -3.9769 16 1 -1.9851 -8.4694 -2.9635 17 6 -2.2382 -8.9174 -5.0437 18 7 -2.8865 -10.0410 -4.8203 19 14 -1.9126 -8.3596 -6.7964 20 1 -0.6134 -8.9110 -7.2582 21 1 -3.0004 -8.8481 -7.6816 22 1 -1.8652 -6.8761 -6.8431 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6890 2.1423 0.0004 27 1 4.1735 2.0593 -0.0010 28 1 5.3046 -0.1285 -0.0014 29 1 2.0441 -3.2537 0.5325 30 1 0.5020 -2.3646 0.5293 31 1 0.6075 -2.1903 -1.9420 32 1 2.1496 -3.0793 -1.9388 33 1 0.2242 -4.6313 -0.5744 34 1 -0.0348 -6.8680 -2.0551 35 1 -1.5769 -5.9789 -2.0588 36 1 -3.1955 -10.5791 -5.5658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273389095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:24 Heat of formation + Delta-G solvation = -15.135741 kcal Electronic energy + Delta-G solvation = -18234.597281 eV Core-core repulsion = 15230.504992 eV Total energy + Delta-G solvation = -3004.092290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74819 -39.20457 -35.64210 -33.96391 -33.07914 -32.42501 -30.38779 -28.64137 -27.41509 -25.61108 -24.18813 -22.69409 -21.60673 -20.46557 -17.87593 -17.20445 -16.82569 -16.24870 -16.07758 -15.43582 -15.14635 -14.95799 -14.55389 -14.14271 -13.85755 -13.48988 -13.30386 -13.26663 -13.05549 -12.90725 -12.78366 -12.19445 -12.14711 -11.74352 -11.29885 -11.25186 -10.99453 -10.59866 -10.05546 -9.85295 -9.75747 -9.51349 -9.11340 -9.00797 -8.94807 -8.48396 -6.90321 -6.27724 -3.99280 0.74078 0.93948 2.77315 3.00094 3.27309 3.34798 3.45712 3.52000 3.65865 4.02778 4.34215 4.36005 4.44911 4.52967 4.65825 4.72141 4.83928 4.95229 5.02359 5.11373 5.16898 5.27285 5.31991 5.33589 5.47187 5.63917 5.67175 5.78696 5.85912 5.90355 5.96519 6.03304 6.37534 6.52680 7.62247 7.68670 7.95399 8.42914 8.51089 9.18562 10.81492 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.043645 B = 0.002772 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.389080 B =10097.780282 C =10172.245797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.129 4.129 3 C -0.077 4.077 4 C -0.173 4.173 5 C 0.095 3.905 6 N -0.476 5.476 7 C 0.133 3.867 8 C -0.086 4.086 9 C 0.132 3.868 10 N -0.737 5.737 11 C 0.530 3.470 12 O -0.519 6.519 13 C -0.124 4.124 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.156 0.844 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 22.272 13.970 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.193 4.193 5 C -0.063 4.063 6 N -0.184 5.184 7 C -0.005 4.005 8 C -0.124 4.124 9 C 0.007 3.993 10 N -0.391 5.391 11 C 0.316 3.684 12 O -0.394 6.394 13 C -0.274 4.274 14 S 0.084 5.916 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.173 0.827 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.343 22.180 12.125 27.312 hybrid contribution -0.737 0.093 0.885 1.155 sum 9.607 22.273 13.010 27.526 Atomic orbital electron populations 1.20872 0.90023 1.03315 1.03201 1.20763 0.97730 0.93539 1.01092 1.21496 0.94199 0.98086 0.96494 1.22148 0.95307 0.99688 1.02149 1.22746 1.00351 0.87589 0.95569 1.67500 1.07658 1.31645 1.11578 1.20837 0.89675 0.94205 0.95832 1.20775 1.00143 0.93755 0.97713 1.21119 0.97231 0.85783 0.95183 1.45929 1.59955 1.24289 1.08952 1.20282 0.78817 0.85933 0.83332 1.90703 1.53249 1.64689 1.30739 1.23278 1.02700 0.96382 1.05057 1.84802 1.74546 1.29120 1.03169 1.22320 1.41175 1.05696 0.97647 0.89367 1.24717 0.93435 0.93873 0.99325 1.69939 1.36484 1.12782 1.32534 0.86731 0.78878 0.82097 0.84125 1.19205 1.19965 1.15917 0.90369 0.91269 0.90586 0.84807 0.84784 0.82691 0.89114 0.89126 0.91565 0.91185 0.76598 0.88428 0.88406 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.63 36.01 0.35 -0.41 16 2 C -0.13 -1.10 5.90 -104.48 -0.62 -1.71 16 3 C -0.08 -0.57 9.86 -39.28 -0.39 -0.95 16 4 C -0.17 -1.23 10.11 -39.44 -0.40 -1.63 16 5 C 0.09 0.82 11.18 -17.55 -0.20 0.63 16 6 N -0.48 -5.28 10.27 -9.47 -0.10 -5.37 16 7 C 0.13 1.33 6.03 -82.59 -0.50 0.83 16 8 C -0.09 -0.76 5.22 -27.88 -0.15 -0.90 16 9 C 0.13 1.55 5.66 -4.04 -0.02 1.53 16 10 N -0.74 -9.37 5.56 -60.30 -0.33 -9.70 16 11 C 0.53 9.52 7.85 -10.98 -0.09 9.43 16 12 O -0.52 -11.46 15.86 5.56 0.09 -11.37 16 13 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 14 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 15 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 19 Si 0.86 21.92 27.74 -169.99 -4.71 17.21 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 25 H 0.08 0.45 5.95 -51.93 -0.31 0.14 16 26 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 27 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 28 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.61 5.94 -51.93 -0.31 0.30 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 34 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -35.60 323.85 -7.73 -43.34 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.77 Total: -0.03 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.57 Total: -7.41 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.34 Total: -40.97 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.60 -7.73 -43.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273389095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.200 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds