Wall clock time and date at job start Tue Mar 31 2020 01:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.41573 * 2 1 4 4 C 1.38629 * 118.41671 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16626 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76103 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72624 * 359.71091 * 6 5 4 8 8 C 1.50705 * 119.61940 * 180.31088 * 7 6 5 9 9 C 1.53002 * 109.46714 * 270.26288 * 8 7 6 10 10 N 1.46496 * 109.47199 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00290 * 180.02562 * 10 9 8 12 12 O 1.21276 * 119.99784 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99805 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.46653 * 179.97438 * 13 11 10 15 15 C 1.76198 * 99.99735 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00407 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99883 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47519 * 89.99809 * 19 17 15 21 21 H 1.48504 * 109.47449 * 210.00495 * 19 17 15 22 22 H 1.48501 * 109.47009 * 330.00108 * 19 17 15 23 23 H 1.09002 * 109.47152 * 89.99975 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00076 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00057 * 1 2 3 26 26 H 1.07998 * 120.79398 * 0.02674 * 3 2 1 27 27 H 1.08004 * 120.41609 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.62281 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47404 * 30.26096 * 8 7 6 30 30 H 1.09001 * 109.47022 * 150.26856 * 8 7 6 31 31 H 1.09004 * 109.47442 * 300.00038 * 9 8 7 32 32 H 1.08997 * 109.47341 * 59.99900 * 9 8 7 33 33 H 0.97003 * 119.99941 * 359.97438 * 10 9 8 34 34 H 1.08998 * 109.47404 * 299.99520 * 13 11 10 35 35 H 1.09001 * 109.47022 * 60.00279 * 13 11 10 36 36 H 0.96999 * 120.00096 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0072 8 6 1.4540 -2.4972 0.0152 9 6 1.1977 -2.9468 -1.4246 10 7 0.4655 -4.2156 -1.4170 11 6 0.1280 -4.8060 -2.5806 12 8 0.4300 -4.2865 -3.6340 13 6 -0.6248 -6.1116 -2.5726 14 16 -0.9281 -6.6434 -4.2760 15 6 -1.7965 -8.1470 -3.9769 16 1 -1.9851 -8.4694 -2.9635 17 6 -2.2382 -8.9174 -5.0437 18 7 -2.8865 -10.0410 -4.8203 19 14 -1.9126 -8.3596 -6.7964 20 1 -0.6134 -8.9110 -7.2582 21 1 -3.0004 -8.8481 -7.6816 22 1 -1.8652 -6.8761 -6.8431 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6890 2.1423 0.0004 27 1 4.1735 2.0593 -0.0010 28 1 5.3046 -0.1285 -0.0014 29 1 2.0441 -3.2537 0.5325 30 1 0.5020 -2.3646 0.5293 31 1 0.6075 -2.1903 -1.9420 32 1 2.1496 -3.0793 -1.9388 33 1 0.2242 -4.6313 -0.5744 34 1 -0.0348 -6.8680 -2.0551 35 1 -1.5769 -5.9789 -2.0588 36 1 -3.1955 -10.5791 -5.5658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273389095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:23 Heat of formation + Delta-G solvation = -40.166315 kcal Electronic energy + Delta-G solvation = -18235.682688 eV Core-core repulsion = 15230.504992 eV Total energy + Delta-G solvation = -3005.177697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39096 -40.57755 -36.68843 -34.67762 -34.63532 -33.91766 -31.57940 -29.69527 -28.04797 -27.82303 -25.06483 -23.31891 -22.32468 -21.80545 -19.89278 -18.00435 -17.79829 -17.43287 -17.13912 -17.02872 -16.69226 -15.88620 -15.60436 -15.27682 -15.20848 -14.90321 -14.61668 -14.08919 -13.96568 -13.66173 -13.64364 -13.38728 -13.33749 -13.01431 -12.96856 -12.63707 -12.49125 -12.01813 -11.86126 -11.16678 -11.06944 -10.64854 -10.52732 -10.37301 -10.18196 -9.73193 -8.99222 -8.51018 -6.21709 0.13084 0.34977 0.99418 1.31862 1.47251 1.55356 1.56306 2.19527 2.26204 2.71612 2.82167 2.87208 3.38587 3.72958 3.86494 3.94433 3.96356 4.04569 4.14011 4.19805 4.27570 4.42555 4.48704 4.60834 4.73702 4.79317 4.81610 4.89250 4.97756 5.23591 5.27595 5.35163 5.38613 5.71553 5.82267 6.12353 6.46197 6.94331 7.05724 7.18486 8.61301 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.043645 B = 0.002772 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.389080 B =10097.780282 C =10172.245797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.168 4.168 5 C 0.075 3.925 6 N -0.510 5.510 7 C 0.107 3.893 8 C -0.074 4.074 9 C 0.137 3.863 10 N -0.709 5.709 11 C 0.534 3.466 12 O -0.566 6.566 13 C -0.110 4.110 14 S -0.179 6.179 15 C -0.527 4.527 16 H 0.064 0.936 17 C 0.045 3.955 18 N -0.917 5.917 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.237 1.237 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.420 0.580 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 24.288 14.909 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 C -0.110 4.110 4 C -0.188 4.188 5 C -0.082 4.082 6 N -0.219 5.219 7 C -0.031 4.031 8 C -0.112 4.112 9 C 0.013 3.987 10 N -0.363 5.363 11 C 0.320 3.680 12 O -0.444 6.444 13 C -0.261 4.261 14 S 0.047 5.953 15 C -0.675 4.675 16 H 0.082 0.918 17 C -0.160 4.160 18 N -0.555 5.555 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.183 1.183 22 H -0.161 1.161 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.189 0.811 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.257 0.743 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.575 24.196 13.128 29.489 hybrid contribution -0.738 -0.432 0.762 1.145 sum 9.837 23.764 13.889 29.230 Atomic orbital electron populations 1.20913 0.88731 1.04510 1.03178 1.21033 0.98785 0.93486 1.00532 1.21904 0.94543 0.98836 0.95681 1.22489 0.95638 1.00170 1.00479 1.23158 1.01329 0.87846 0.95855 1.67454 1.08505 1.33152 1.12753 1.21007 0.89717 0.95042 0.97311 1.20692 1.01383 0.93603 0.95499 1.21108 0.95634 0.84766 0.97199 1.45664 1.58223 1.24149 1.08303 1.20012 0.78594 0.85399 0.83995 1.90693 1.55354 1.65733 1.32628 1.23268 1.04453 0.97619 1.00724 1.84755 1.74125 1.27470 1.08948 1.22456 1.41237 1.07112 0.96668 0.91784 1.25560 0.93319 0.93998 1.03162 1.70014 1.37567 1.13893 1.34011 0.85871 0.79234 0.81522 0.79769 1.18822 1.18302 1.16088 0.90859 0.89587 0.89965 0.82266 0.81954 0.81086 0.88993 0.86650 0.91984 0.93562 0.74255 0.86716 0.86337 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.63 71.24 0.69 -0.56 16 2 C -0.14 -2.07 5.90 -19.77 -0.12 -2.19 16 3 C -0.08 -1.04 9.86 22.47 0.22 -0.82 16 4 C -0.17 -2.04 10.11 22.36 0.23 -1.82 16 5 C 0.08 1.23 11.18 84.69 0.95 2.18 16 6 N -0.51 -11.05 10.27 -183.88 -1.89 -12.94 16 7 C 0.11 2.03 6.03 42.54 0.26 2.29 16 8 C -0.07 -1.19 5.22 29.85 0.16 -1.03 16 9 C 0.14 3.10 5.66 86.38 0.49 3.59 16 10 N -0.71 -16.70 5.56 -463.07 -2.57 -19.28 16 11 C 0.53 18.52 7.85 87.66 0.69 19.21 16 12 O -0.57 -24.83 15.86 -3.02 -0.05 -24.87 16 13 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 14 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 15 C -0.53 -30.71 10.04 67.95 0.68 -30.03 16 16 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 17 C 0.04 2.65 5.50 84.86 0.47 3.12 16 18 N -0.92 -55.94 13.97 21.65 0.30 -55.64 16 19 Si 0.91 45.29 27.74 68.60 1.90 47.19 16 20 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 0.62 8.10 -2.39 -0.02 0.60 16 25 H 0.08 0.75 5.95 -2.38 -0.01 0.73 16 26 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 27 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 28 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 1.24 5.94 -2.39 -0.01 1.23 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.42 6.70 8.47 -92.71 -0.79 5.92 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.90 16 35 H 0.12 3.96 8.14 -2.40 -0.02 3.94 16 36 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.95 323.85 2.06 -75.89 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.27 Total: 9.54 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.14 Total: -9.72 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -4.16 Total: -87.85 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -77.95 2.06 -75.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273389095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.727 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds