Wall clock time and date at job start Tue Mar 31 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33823 * 124.52232 * 2 1 4 4 C 1.37468 * 115.10132 * 180.02562 * 3 2 1 5 5 C 1.36648 * 113.29662 * 0.02562 * 4 3 2 6 6 C 1.46584 * 125.45677 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99813 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47255 * 174.94756 * 9 8 6 11 11 N 1.46499 * 115.55055 * 80.39082 * 10 9 8 12 12 C 1.36931 * 120.00114 * 65.27431 * 11 10 9 13 13 H 1.07998 * 120.00050 * 355.17817 * 12 11 10 14 14 C 1.38816 * 120.00251 * 175.17311 * 12 11 10 15 15 N 1.31615 * 120.00049 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99652 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47291 * 269.99331 * 16 14 12 18 18 H 1.48495 * 109.47317 * 30.00100 * 16 14 12 19 19 H 1.48507 * 109.46881 * 149.99512 * 16 14 12 20 20 C 1.52997 * 117.50130 * 226.06160 * 10 9 8 21 21 C 1.53002 * 117.49723 * 294.72143 * 10 9 8 22 22 S 1.70615 * 124.52377 * 180.35690 * 2 1 3 23 23 H 1.08999 * 109.47146 * 89.99847 * 1 2 3 24 24 H 1.08994 * 109.47014 * 209.99715 * 1 2 3 25 25 H 1.08998 * 109.46755 * 329.99829 * 1 2 3 26 26 H 1.07997 * 122.44773 * 0.02562 * 3 2 1 27 27 H 1.08000 * 123.35291 * 180.02562 * 4 3 2 28 28 H 0.96999 * 120.00099 * 0.02562 * 8 6 5 29 29 H 1.08995 * 109.47393 * 54.94606 * 9 8 6 30 30 H 1.08997 * 109.47569 * 294.94589 * 9 8 6 31 31 H 0.97001 * 120.00098 * 245.27738 * 11 10 9 32 32 H 0.97002 * 119.99905 * 179.97438 * 15 14 12 33 33 H 1.09000 * 117.50034 * 215.00089 * 20 10 9 34 34 H 1.09008 * 117.49740 * 0.02562 * 20 10 9 35 35 H 1.08997 * 117.50134 * 359.97438 * 21 10 9 36 36 H 1.08999 * 117.49829 * 144.97366 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0016 6 6 5.3123 -0.9882 -0.0029 7 8 6.2659 -0.2320 -0.0027 8 7 5.5096 -2.3215 -0.0043 9 6 6.8719 -2.8603 -0.0051 10 6 6.8177 -4.3842 0.1203 11 7 6.5325 -5.1105 -1.1196 12 6 7.4275 -5.0748 -2.1553 13 1 8.3056 -4.4496 -2.0889 14 6 7.2063 -5.8423 -3.2906 15 7 8.0663 -5.8076 -4.2863 16 14 5.6872 -6.9233 -3.4057 17 1 5.9947 -8.2691 -2.8587 18 1 4.5835 -6.3111 -2.6233 19 1 5.2757 -7.0490 -4.8271 20 6 7.7650 -5.0447 1.1240 21 6 6.2658 -4.9666 1.4231 22 16 2.4740 -1.4057 -0.0088 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8429 2.0965 0.0004 27 1 4.3550 1.6703 -0.0002 28 1 4.7496 -2.9242 -0.0049 29 1 7.4270 -2.4460 0.8365 30 1 7.3691 -2.5900 -0.9366 31 1 5.7097 -5.6167 -1.2069 32 1 7.9119 -6.3442 -5.0795 33 1 8.1760 -6.0195 0.8617 34 1 8.4266 -4.3934 1.6953 35 1 5.9418 -4.2642 2.1910 36 1 5.6902 -5.8900 1.3576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323383557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:25 Heat of formation + Delta-G solvation = 10.568034 kcal Electronic energy + Delta-G solvation = -19049.806843 eV Core-core repulsion = 16046.829153 eV Total energy + Delta-G solvation = -3002.977690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92891 -39.29723 -38.54911 -35.42597 -34.88166 -32.98592 -32.37829 -29.31953 -27.12740 -25.65916 -24.46374 -23.36520 -22.32321 -21.08866 -20.00916 -19.73554 -18.92709 -17.50350 -16.95682 -16.70273 -16.36219 -16.05934 -15.85364 -15.21344 -14.87792 -14.76842 -14.60251 -14.19101 -13.95761 -13.76611 -13.31859 -13.09137 -12.94273 -12.89829 -12.73939 -12.30453 -12.19973 -11.88270 -11.87219 -11.75918 -11.34763 -11.05626 -10.68957 -10.24744 -9.62175 -9.55810 -9.35668 -8.02594 -5.38976 -0.52596 0.44141 0.88663 1.35997 1.37488 1.41511 1.48055 2.01767 2.15684 2.47509 2.98035 3.28172 3.36975 3.72347 3.78820 3.88765 4.11489 4.23247 4.27134 4.39626 4.66047 4.69522 4.74693 4.77442 4.81216 4.99320 5.06707 5.09165 5.13006 5.20163 5.28388 5.37295 5.42139 5.78494 6.20347 6.41288 7.05333 7.06211 7.79169 7.99266 9.18861 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.004790 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.219087 B = 5844.138037 C = 6436.787250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.185 4.185 3 C -0.166 4.166 4 C -0.052 4.052 5 C -0.305 4.305 6 C 0.582 3.418 7 O -0.581 6.581 8 N -0.702 5.702 9 C 0.159 3.841 10 C 0.095 3.905 11 N -0.715 5.715 12 C -0.225 4.225 13 H 0.052 0.948 14 C -0.063 4.063 15 N -0.984 5.984 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.245 1.245 19 H -0.300 1.300 20 C -0.180 4.180 21 C -0.147 4.147 22 S 0.222 5.778 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.148 0.852 28 H 0.406 0.594 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.371 0.629 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.135 9.263 14.325 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.305 4.305 3 C -0.195 4.195 4 C -0.086 4.086 5 C -0.425 4.425 6 C 0.370 3.630 7 O -0.463 6.463 8 N -0.352 5.352 9 C 0.033 3.967 10 C 0.003 3.997 11 N -0.357 5.357 12 C -0.356 4.356 13 H 0.070 0.930 14 C -0.254 4.254 15 N -0.635 5.635 16 Si 0.784 3.216 17 H -0.204 1.204 18 H -0.170 1.170 19 H -0.227 1.227 20 C -0.220 4.220 21 C -0.185 4.185 22 S 0.489 5.511 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.188 0.812 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.206 0.794 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.583 8.233 14.178 24.781 hybrid contribution 0.056 0.629 -0.930 1.124 sum -18.527 8.862 13.249 24.440 Atomic orbital electron populations 1.20573 0.84824 1.04950 1.04252 1.24762 1.03138 0.97014 1.05554 1.20153 0.91430 1.01082 1.06867 1.20960 0.97461 0.94646 0.95575 1.24469 0.96678 0.99294 1.22051 1.17400 0.87626 0.82232 0.75724 1.90773 1.43598 1.58990 1.52969 1.45717 1.09679 1.05839 1.73939 1.21018 0.82578 0.92290 1.00805 1.20257 1.06971 0.88851 0.83615 1.41988 1.21883 1.59560 1.12289 1.18862 1.02005 1.20196 0.94538 0.93045 1.25519 1.01754 1.01901 0.96211 1.69898 1.39287 1.46063 1.08203 0.85392 0.80266 0.79245 0.76736 1.20373 1.16971 1.22655 1.23383 0.93527 1.02601 1.02454 1.23269 0.96287 1.03093 0.95802 1.82950 0.92777 1.07642 1.67688 0.89265 0.89964 0.88392 0.81219 0.83482 0.75863 0.90388 0.94459 0.79441 0.93377 0.89677 0.87659 0.86278 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.31 71.24 0.73 -0.05 16 2 C -0.18 -3.01 6.28 24.68 0.15 -2.85 16 3 C -0.17 -2.95 9.99 21.08 0.21 -2.74 16 4 C -0.05 -1.27 10.01 21.72 0.22 -1.05 16 5 C -0.30 -8.49 6.45 24.08 0.16 -8.34 16 6 C 0.58 20.46 7.78 86.42 0.67 21.13 16 7 O -0.58 -24.71 16.84 -4.34 -0.07 -24.78 16 8 N -0.70 -23.21 5.51 -467.18 -2.57 -25.78 16 9 C 0.16 5.91 5.73 86.38 0.49 6.41 16 10 C 0.09 3.42 2.15 3.60 0.01 3.42 16 11 N -0.71 -31.85 5.29 -303.35 -1.61 -33.46 16 12 C -0.23 -12.68 10.04 84.04 0.84 -11.84 16 13 H 0.05 3.26 8.00 -2.91 -0.02 3.24 16 14 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 15 N -0.98 -63.44 13.97 21.65 0.30 -63.13 16 16 Si 0.96 44.37 27.78 68.60 1.91 46.28 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.25 -9.92 6.45 99.48 0.64 -9.28 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 C -0.18 -5.65 10.11 30.62 0.31 -5.34 16 21 C -0.15 -3.84 10.14 30.62 0.31 -3.53 16 22 S 0.22 4.47 22.10 -56.49 -1.25 3.22 16 23 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.41 11.65 7.59 -92.71 -0.70 10.94 16 29 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16 30 H 0.04 1.72 7.73 -2.39 -0.02 1.70 16 31 H 0.37 15.51 5.87 -92.71 -0.54 14.97 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.11 2.91 8.08 -2.38 -0.02 2.89 16 35 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -74.65 325.15 1.08 -73.57 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.21 Total: 32.07 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.58 Total: -7.97 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -3.88 Total: -122.38 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.07 Total: -24.78 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.91 Total: 46.28 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.25 Total: 3.22 kcal Total: -74.65 1.08 -73.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323383557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.143 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds