Wall clock time and date at job start Tue Mar 31 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.47276 * 2 1 4 4 H 1.08999 * 109.58854 * 55.28709 * 3 2 1 5 5 C 1.52980 * 109.59163 * 175.72869 * 3 2 1 6 6 C 1.53502 * 109.53137 * 171.33128 * 5 3 2 7 7 C 1.53248 * 108.76646 * 289.42028 * 6 5 3 8 8 C 1.51086 * 108.75904 * 49.26985 * 7 6 5 9 9 S 1.75974 * 125.90541 * 163.91102 * 8 7 6 10 10 C 1.76070 * 89.87591 * 179.97438 * 9 8 7 11 11 N 1.37912 * 125.46019 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00082 * 0.02562 * 11 10 9 13 13 O 1.21858 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.41234 * 120.00031 * 179.97438 * 12 11 10 15 15 H 1.07996 * 120.00177 * 359.97438 * 14 12 11 16 16 C 1.40168 * 119.99760 * 179.97438 * 14 12 11 17 17 N 1.30618 * 119.99916 * 0.02562 * 16 14 12 18 18 Si 1.86791 * 119.99803 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47341 * 60.00521 * 18 16 14 20 20 H 1.48506 * 109.47170 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47648 * 300.00136 * 18 16 14 22 22 N 1.29888 * 109.08069 * 359.97438 * 10 9 8 23 23 C 1.32180 * 117.98314 * 359.97438 * 22 10 9 24 24 H 1.09007 * 109.47065 * 299.99989 * 1 2 3 25 25 H 1.09005 * 109.47626 * 59.99713 * 1 2 3 26 26 H 1.08999 * 109.47681 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47065 * 240.00011 * 2 1 3 28 28 H 1.09005 * 109.47626 * 120.00287 * 2 1 3 29 29 H 1.08998 * 109.46985 * 291.30782 * 5 3 2 30 30 H 1.09002 * 109.47187 * 51.31252 * 5 3 2 31 31 H 1.09001 * 109.78093 * 169.56398 * 6 5 3 32 32 H 1.09007 * 109.53492 * 49.13015 * 6 5 3 33 33 H 1.09002 * 109.61272 * 289.44446 * 7 6 5 34 34 H 1.09004 * 109.61465 * 169.09758 * 7 6 5 35 35 H 0.97000 * 120.00363 * 180.02562 * 11 10 9 36 36 H 0.96998 * 120.00158 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6104 1.9820 0.8441 5 6 3.5660 1.4470 0.1073 6 6 4.0915 2.8728 -0.1098 7 6 3.9035 3.2485 -1.5836 8 6 2.4843 2.9264 -1.9899 9 16 1.6614 3.5232 -3.4263 10 6 0.2178 2.6256 -2.9675 11 7 -0.9656 2.5978 -3.6751 12 6 -1.0822 3.2976 -4.8211 13 8 -0.1417 3.9545 -5.2321 14 6 -2.2940 3.2687 -5.5460 15 1 -3.1270 2.6856 -5.1823 16 6 -2.4154 3.9970 -6.7374 17 7 -1.4076 4.7019 -7.1776 18 14 -4.0178 3.9582 -7.6965 19 1 -5.1173 4.4784 -6.8447 20 1 -3.8888 4.8041 -8.9103 21 1 -4.3211 2.5610 -8.0976 22 7 0.4461 1.9938 -1.8558 23 6 1.6389 2.1249 -1.3016 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8616 1.0986 1.0969 30 1 3.9855 0.7860 -0.6511 31 1 5.1500 2.9188 0.1462 32 1 3.5323 3.5669 0.5178 33 1 4.5987 2.6769 -2.1984 34 1 4.0891 4.3144 -1.7161 35 1 -1.7141 2.0746 -3.3481 36 1 -1.4915 5.2055 -8.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337551222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:40 Heat of formation + Delta-G solvation = -35.277762 kcal Electronic energy + Delta-G solvation = -19600.580213 eV Core-core repulsion = 16595.614500 eV Total energy + Delta-G solvation = -3004.965713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07441 -40.04052 -37.42498 -35.22264 -34.76204 -34.48056 -30.34168 -29.77157 -28.63672 -25.37730 -24.54305 -23.09526 -22.21584 -21.63019 -20.24261 -18.95436 -18.40080 -17.57834 -17.18350 -16.46799 -15.98823 -15.87913 -15.32083 -14.87601 -14.69880 -14.42027 -14.27451 -14.07578 -13.56611 -13.34128 -13.07955 -12.91495 -12.82343 -12.74959 -12.72021 -12.16023 -12.08931 -11.74046 -11.65362 -11.28380 -11.17968 -11.16381 -10.94976 -10.14367 -9.97716 -9.88928 -8.65484 -8.51340 -7.15878 0.05457 0.44523 1.29345 1.39488 1.39848 1.55154 1.91328 2.12008 2.36777 2.43952 3.46580 3.62679 3.89964 3.92444 4.12927 4.30950 4.38187 4.46851 4.63685 4.71597 4.74150 4.86506 4.95318 5.04529 5.12099 5.15827 5.18509 5.22083 5.30459 5.41980 5.47046 5.54851 5.66620 5.69728 5.88124 6.02139 6.59980 6.81821 7.22486 8.09698 8.39659 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.004646 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.730463 B = 6025.271298 C = 6846.915084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.005 4.005 4 H 0.085 0.915 5 C -0.109 4.109 6 C -0.108 4.108 7 C -0.031 4.031 8 C -0.304 4.304 9 S 0.112 5.888 10 C 0.293 3.707 11 N -0.635 5.635 12 C 0.516 3.484 13 O -0.587 6.587 14 C -0.547 4.547 15 H 0.097 0.903 16 C 0.035 3.965 17 N -0.788 5.788 18 Si 1.005 2.995 19 H -0.253 1.253 20 H -0.270 1.270 21 H -0.253 1.253 22 N -0.535 5.535 23 C 0.081 3.919 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -5.871 12.144 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.138 4.138 3 C -0.026 4.026 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.071 4.071 8 C -0.427 4.427 9 S 0.363 5.637 10 C -0.076 4.076 11 N -0.284 5.284 12 C 0.327 3.673 13 O -0.474 6.474 14 C -0.582 4.582 15 H 0.115 0.885 16 C -0.185 4.185 17 N -0.416 5.416 18 Si 0.824 3.176 19 H -0.176 1.176 20 H -0.195 1.195 21 H -0.177 1.177 22 N -0.259 5.259 23 C -0.051 4.051 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.597 -4.897 10.945 13.686 hybrid contribution -1.074 -0.426 -0.005 1.156 sum 5.523 -5.323 10.940 13.361 Atomic orbital electron populations 1.22081 0.96194 1.00923 1.03378 1.21367 0.96201 0.94528 1.01678 1.20232 0.96798 0.95385 0.90192 0.89644 1.21678 0.92277 0.97292 1.03378 1.21658 1.02567 0.96722 0.93694 1.20131 0.87711 1.01264 0.97999 1.26824 1.04001 1.09614 1.02226 1.86139 1.05750 1.48978 1.22840 1.24277 0.93563 0.97065 0.92691 1.43218 1.10967 1.50271 1.23987 1.17558 0.90753 0.79894 0.79046 1.90596 1.41790 1.46623 1.68405 1.20371 0.98694 1.31112 1.08002 0.88460 1.27028 1.02005 0.91878 0.97587 1.70101 1.33040 1.19572 1.18847 0.84936 0.75776 0.79846 0.77086 1.17645 1.19476 1.17665 1.66064 1.23288 1.27093 1.09503 1.21051 0.86790 0.98304 0.98908 0.93365 0.90808 0.93318 0.93747 0.89564 0.88310 0.91933 0.88394 0.91798 0.90392 0.91029 0.74680 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 9.65 71.98 0.69 -3.89 16 2 C -0.10 -2.43 5.38 30.59 0.16 -2.26 16 3 C -0.01 -0.13 2.56 -11.02 -0.03 -0.16 16 4 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 5 C -0.11 -2.09 5.17 30.76 0.16 -1.93 16 6 C -0.11 -2.07 5.99 30.85 0.18 -1.89 16 7 C -0.03 -0.82 6.26 30.05 0.19 -0.63 16 8 C -0.30 -10.92 6.39 25.13 0.16 -10.76 16 9 S 0.11 5.08 20.51 -56.49 -1.16 3.93 16 10 C 0.29 13.57 8.37 179.50 1.50 15.07 16 11 N -0.64 -30.32 5.35 -318.72 -1.71 -32.02 16 12 C 0.52 28.83 7.51 84.98 0.64 29.47 16 13 O -0.59 -36.55 12.36 -4.85 -0.06 -36.61 16 14 C -0.55 -28.96 9.29 23.48 0.22 -28.74 16 15 H 0.10 4.54 7.85 -2.91 -0.02 4.52 16 16 C 0.04 1.81 5.50 85.34 0.47 2.28 16 17 N -0.79 -44.54 11.72 21.86 0.26 -44.28 16 18 Si 1.01 37.53 29.56 68.60 2.03 39.56 16 19 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 21 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 22 N -0.53 -21.83 7.33 -183.24 -1.34 -23.18 16 23 C 0.08 2.87 6.20 42.36 0.26 3.13 16 24 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.07 2.51 5.10 -2.38 -0.01 2.49 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.42 17.29 8.77 -92.71 -0.81 16.47 16 36 H 0.28 14.45 8.29 -92.71 -0.77 13.68 16 Total: -1.00 -68.10 305.89 2.92 -65.18 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.29 Total: 27.75 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.61 Total: -0.33 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -2.79 Total: -99.48 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.06 Total: -36.61 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.16 Total: 3.93 kcal Total: -68.10 2.92 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337551222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.905 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds