Wall clock time and date at job start Tue Mar 31 2020 01:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.46931 * 2 1 4 4 N 1.31821 * 119.67003 * 269.97759 * 3 2 1 5 5 C 1.31854 * 121.79821 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.92173 * 0.02562 * 5 4 3 7 7 C 1.38506 * 119.23489 * 359.71502 * 6 5 4 8 8 C 1.50691 * 120.82272 * 180.27759 * 7 6 5 9 9 C 1.38849 * 119.67085 * 90.00150 * 3 2 1 10 10 N 1.39948 * 120.48385 * 359.97438 * 9 3 2 11 11 C 1.34781 * 119.99710 * 129.42612 * 10 9 3 12 12 O 1.21286 * 120.00079 * 356.53816 * 11 10 9 13 13 C 1.50699 * 119.99835 * 176.26693 * 11 10 9 14 14 S 1.81000 * 109.46965 * 180.27114 * 13 11 10 15 15 C 1.76204 * 100.00146 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.38792 * 120.00353 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99865 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00394 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46894 * 60.00045 * 19 17 15 21 21 H 1.48495 * 109.47501 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47306 * 300.00502 * 19 17 15 23 23 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47258 * 299.99996 * 1 2 3 25 25 H 1.08996 * 109.47471 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.47258 * 240.00004 * 2 1 3 27 27 H 1.09004 * 109.47359 * 119.99901 * 2 1 3 28 28 H 1.08002 * 119.53808 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.38301 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47679 * 278.35529 * 8 7 6 31 31 H 1.09005 * 109.47265 * 38.36373 * 8 7 6 32 32 H 1.09002 * 109.47250 * 158.35645 * 8 7 6 33 33 H 0.96995 * 120.00399 * 309.42414 * 10 9 3 34 34 H 1.08997 * 109.47591 * 300.27047 * 13 11 10 35 35 H 1.09000 * 109.47490 * 60.27354 * 13 11 10 36 36 H 0.97001 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2501 2.0359 -1.1454 5 6 2.6898 3.2780 -1.1943 6 6 2.9417 3.9887 -0.0354 7 6 2.7214 3.3834 1.1908 8 6 2.9781 4.1269 2.4761 9 6 2.2613 2.0688 1.2064 10 7 2.0287 1.4124 2.4203 11 6 2.9812 1.4016 3.3739 12 8 4.0625 1.9063 3.1567 13 6 2.7005 0.7679 4.7120 14 16 4.1614 0.9198 5.7698 15 6 3.5702 0.1207 7.2247 16 1 2.5673 -0.2791 7.2516 17 6 4.3933 0.0050 8.3362 18 7 5.6159 0.4918 8.3033 19 14 3.7664 -0.8415 9.8788 20 1 3.3969 -2.2438 9.5585 21 1 4.8305 -0.8349 10.9145 22 1 2.5734 -0.1197 10.3895 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8554 3.7468 -2.1531 29 1 3.3013 5.0059 -0.0856 30 1 4.0413 4.0870 2.7129 31 1 2.6698 5.1663 2.3625 32 1 2.4087 3.6653 3.2828 33 1 1.1821 0.9652 2.5754 34 1 1.8568 1.2721 5.1831 35 1 2.4615 -0.2863 4.5719 36 1 6.1911 0.4113 9.0802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338350630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:42 Heat of formation + Delta-G solvation = -11.545625 kcal Electronic energy + Delta-G solvation = -19212.387930 eV Core-core repulsion = 16208.451319 eV Total energy + Delta-G solvation = -3003.936611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02765 -38.93478 -35.16761 -34.61193 -32.48537 -32.38530 -30.11403 -28.71062 -27.50828 -25.54862 -24.33491 -22.87606 -21.09808 -20.23769 -18.25555 -17.40053 -16.96986 -16.33372 -15.88735 -14.95563 -14.85338 -14.55513 -14.31232 -14.11058 -13.91595 -13.44830 -13.09280 -12.91041 -12.65556 -12.60428 -12.37009 -12.03946 -11.84749 -11.40712 -11.22312 -11.10432 -11.07818 -10.83084 -10.25019 -9.92379 -9.81149 -9.35003 -9.24520 -9.11082 -8.37767 -8.33263 -6.57756 -6.27198 -3.98930 1.00235 1.24189 2.86896 2.88147 3.20080 3.23520 3.26323 3.56155 3.70990 4.14704 4.19430 4.55029 4.74766 4.89683 5.03916 5.06753 5.08337 5.17408 5.19824 5.30811 5.51387 5.55563 5.63159 5.72899 5.74780 5.77927 5.80041 6.00114 6.02956 6.05004 6.19244 6.32005 6.40666 6.81502 7.41815 7.54059 7.93915 8.29301 8.39179 9.18237 10.80130 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.003952 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.963053 B = 7084.060171 C = 7728.027679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C 0.119 3.881 4 N -0.477 5.477 5 C 0.089 3.911 6 C -0.167 4.167 7 C -0.031 4.031 8 C -0.111 4.111 9 C 0.102 3.898 10 N -0.678 5.678 11 C 0.530 3.470 12 O -0.494 6.494 13 C -0.154 4.154 14 S -0.055 6.055 15 C -0.538 4.538 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 3.541 -15.457 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.021 4.021 4 N -0.186 5.186 5 C -0.069 4.069 6 C -0.187 4.187 7 C -0.041 4.041 8 C -0.168 4.168 9 C 0.006 3.994 10 N -0.328 5.328 11 C 0.317 3.683 12 O -0.366 6.366 13 C -0.304 4.304 14 S 0.171 5.829 15 C -0.686 4.686 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.699 3.956 -16.419 18.998 hybrid contribution -1.812 -0.807 2.081 2.874 sum -10.511 3.149 -14.339 18.055 Atomic orbital electron populations 1.21707 0.94172 1.02172 1.02102 1.20449 0.96308 0.90716 1.03919 1.21234 0.97460 0.96312 0.87135 1.67453 1.12720 1.10381 1.28068 1.22617 0.95698 0.90248 0.98293 1.21915 1.02795 1.01830 0.92202 1.20399 0.95086 0.92018 0.96589 1.20916 1.04228 0.98391 0.93217 1.18318 1.03025 0.91576 0.86516 1.43565 1.19282 1.56129 1.13854 1.20512 0.83650 0.79048 0.85071 1.90726 1.23047 1.42922 1.79932 1.23541 1.08007 1.03287 0.95575 1.85404 1.12057 1.76837 1.08567 1.22817 1.02699 1.43679 0.99435 0.90895 1.24983 0.94563 0.95319 0.98577 1.70001 1.06698 1.42916 1.30628 0.86220 0.78501 0.79750 0.81026 1.19893 1.20776 1.19901 0.91754 0.92917 0.92190 0.89732 0.90142 0.82749 0.84657 0.88678 0.91727 0.91628 0.75509 0.88899 0.88889 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.08 -0.81 5.86 -27.89 -0.16 -0.97 16 3 C 0.12 1.56 6.05 -82.37 -0.50 1.07 16 4 N -0.48 -6.34 10.27 -9.32 -0.10 -6.43 16 5 C 0.09 1.02 11.18 -17.53 -0.20 0.82 16 6 C -0.17 -1.96 9.84 -39.47 -0.39 -2.35 16 7 C -0.03 -0.44 5.51 -104.14 -0.57 -1.01 16 8 C -0.11 -1.57 8.24 36.00 0.30 -1.27 16 9 C 0.10 1.44 5.89 -83.54 -0.49 0.94 16 10 N -0.68 -9.20 4.02 -9.76 -0.04 -9.24 16 11 C 0.53 9.33 6.05 -10.98 -0.07 9.27 16 12 O -0.49 -10.46 12.80 5.55 0.07 -10.39 16 13 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 14 S -0.06 -1.43 20.57 -107.50 -2.21 -3.65 16 15 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 17 C 0.08 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 19 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.85 7.43 -51.93 -0.39 0.47 16 28 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.09 1.55 7.11 -51.93 -0.37 1.18 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 33 H 0.41 4.25 8.36 -40.82 -0.34 3.91 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -33.24 319.49 -7.80 -41.04 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.75 Total: 2.44 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.29 Total: -9.62 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.60 Total: -40.57 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.24 -7.80 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338350630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.496 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds