Wall clock time and date at job start Tue Mar 31 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.46931 * 2 1 4 4 N 1.31821 * 119.67003 * 269.97759 * 3 2 1 5 5 C 1.31854 * 121.79821 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.92173 * 0.02562 * 5 4 3 7 7 C 1.38506 * 119.23489 * 359.71502 * 6 5 4 8 8 C 1.50691 * 120.82272 * 180.27759 * 7 6 5 9 9 C 1.38849 * 119.67085 * 90.00150 * 3 2 1 10 10 N 1.39948 * 120.48385 * 359.97438 * 9 3 2 11 11 C 1.34781 * 119.99710 * 129.42612 * 10 9 3 12 12 O 1.21286 * 120.00079 * 356.53816 * 11 10 9 13 13 C 1.50699 * 119.99835 * 176.26693 * 11 10 9 14 14 S 1.81000 * 109.46965 * 180.27114 * 13 11 10 15 15 C 1.76204 * 100.00146 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.38792 * 120.00353 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99865 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00394 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46894 * 60.00045 * 19 17 15 21 21 H 1.48495 * 109.47501 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47306 * 300.00502 * 19 17 15 23 23 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47258 * 299.99996 * 1 2 3 25 25 H 1.08996 * 109.47471 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.47258 * 240.00004 * 2 1 3 27 27 H 1.09004 * 109.47359 * 119.99901 * 2 1 3 28 28 H 1.08002 * 119.53808 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.38301 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47679 * 278.35529 * 8 7 6 31 31 H 1.09005 * 109.47265 * 38.36373 * 8 7 6 32 32 H 1.09002 * 109.47250 * 158.35645 * 8 7 6 33 33 H 0.96995 * 120.00399 * 309.42414 * 10 9 3 34 34 H 1.08997 * 109.47591 * 300.27047 * 13 11 10 35 35 H 1.09000 * 109.47490 * 60.27354 * 13 11 10 36 36 H 0.97001 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2501 2.0359 -1.1454 5 6 2.6898 3.2780 -1.1943 6 6 2.9417 3.9887 -0.0354 7 6 2.7214 3.3834 1.1908 8 6 2.9781 4.1269 2.4761 9 6 2.2613 2.0688 1.2064 10 7 2.0287 1.4124 2.4203 11 6 2.9812 1.4016 3.3739 12 8 4.0625 1.9063 3.1567 13 6 2.7005 0.7679 4.7120 14 16 4.1614 0.9198 5.7698 15 6 3.5702 0.1207 7.2247 16 1 2.5673 -0.2791 7.2516 17 6 4.3933 0.0050 8.3362 18 7 5.6159 0.4918 8.3033 19 14 3.7664 -0.8415 9.8788 20 1 3.3969 -2.2438 9.5585 21 1 4.8305 -0.8349 10.9145 22 1 2.5734 -0.1197 10.3895 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8554 3.7468 -2.1531 29 1 3.3013 5.0059 -0.0856 30 1 4.0413 4.0870 2.7129 31 1 2.6698 5.1663 2.3625 32 1 2.4087 3.6653 3.2828 33 1 1.1821 0.9652 2.5754 34 1 1.8568 1.2721 5.1831 35 1 2.4615 -0.2863 4.5719 36 1 6.1911 0.4113 9.0802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338350630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:41 Heat of formation + Delta-G solvation = -33.012203 kcal Electronic energy + Delta-G solvation = -19213.318790 eV Core-core repulsion = 16208.451319 eV Total energy + Delta-G solvation = -3004.867471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12219 -40.18631 -36.31547 -35.59286 -34.58364 -33.43895 -31.33737 -29.85234 -28.62013 -27.65026 -25.19732 -23.94145 -22.16433 -21.40116 -19.97462 -18.76164 -18.19869 -17.62393 -16.87532 -16.81656 -16.27633 -16.07117 -15.49657 -15.05775 -15.00803 -14.73293 -14.49039 -14.20231 -13.92044 -13.64119 -13.53735 -13.17514 -13.02916 -12.86644 -12.82359 -12.64506 -12.26572 -11.99743 -11.77027 -11.42383 -11.18650 -11.12692 -10.45095 -10.29317 -10.24036 -9.43616 -8.66543 -8.34826 -6.12651 0.01748 0.22748 1.23776 1.44089 1.45306 1.50542 1.55161 2.12077 2.26988 2.74666 2.99879 3.26815 3.33330 3.58910 3.76397 3.86313 4.09813 4.25613 4.26594 4.32309 4.37706 4.42112 4.48282 4.56236 4.67864 4.81708 4.90660 5.02870 5.10145 5.21677 5.24290 5.30171 5.36791 5.42167 5.79060 6.19514 6.27545 6.97104 7.06983 7.09892 8.73921 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.003952 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.963053 B = 7084.060171 C = 7728.027679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C 0.115 3.885 4 N -0.493 5.493 5 C 0.091 3.909 6 C -0.166 4.166 7 C -0.051 4.051 8 C -0.104 4.104 9 C 0.078 3.922 10 N -0.655 5.655 11 C 0.536 3.464 12 O -0.535 6.535 13 C -0.129 4.129 14 S -0.141 6.141 15 C -0.548 4.548 16 H 0.084 0.916 17 C 0.016 3.984 18 N -0.911 5.911 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.262 1.262 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.189 0.811 29 H 0.163 0.837 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.424 0.576 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 3.152 -16.236 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.025 4.025 4 N -0.203 5.203 5 C -0.066 4.066 6 C -0.186 4.186 7 C -0.060 4.060 8 C -0.161 4.161 9 C -0.018 4.018 10 N -0.305 5.305 11 C 0.323 3.677 12 O -0.411 6.411 13 C -0.280 4.280 14 S 0.086 5.914 15 C -0.696 4.696 16 H 0.102 0.898 17 C -0.189 4.189 18 N -0.548 5.548 19 Si 0.817 3.183 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.186 1.186 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.206 0.794 29 H 0.180 0.820 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.881 3.557 -17.231 20.687 hybrid contribution -1.190 -0.620 2.138 2.524 sum -12.071 2.937 -15.093 19.548 Atomic orbital electron populations 1.21677 0.92379 1.03334 1.02158 1.20523 0.97799 0.89259 1.03839 1.21564 0.96915 0.97259 0.86748 1.67548 1.13410 1.11331 1.28004 1.23230 0.93979 0.89663 0.99707 1.22230 1.01972 1.03065 0.91340 1.20607 0.95717 0.92415 0.97281 1.20792 1.02168 0.99984 0.93115 1.18488 1.04731 0.92017 0.86582 1.43157 1.18963 1.55356 1.13013 1.20213 0.83696 0.78580 0.85201 1.90724 1.24899 1.44864 1.80568 1.23355 1.04652 1.05078 0.94953 1.85563 1.17659 1.77363 1.10790 1.23185 1.03179 1.43448 0.99798 0.89799 1.26078 0.94615 0.95899 1.02294 1.70168 1.08281 1.44586 1.31721 0.85041 0.78079 0.78859 0.76272 1.18688 1.20539 1.18633 0.90045 0.92353 0.92622 0.89710 0.90296 0.79372 0.81961 0.91440 0.89146 0.93162 0.73607 0.86818 0.86820 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.08 -1.50 5.86 29.85 0.18 -1.32 16 3 C 0.12 2.87 6.05 42.71 0.26 3.13 16 4 N -0.49 -12.21 10.27 -183.39 -1.88 -14.10 16 5 C 0.09 1.87 11.18 84.70 0.95 2.81 16 6 C -0.17 -3.56 9.84 22.34 0.22 -3.34 16 7 C -0.05 -1.37 5.51 -19.55 -0.11 -1.48 16 8 C -0.10 -2.94 8.24 71.23 0.59 -2.35 16 9 C 0.08 2.12 5.89 38.24 0.23 2.34 16 10 N -0.65 -17.10 4.02 -303.19 -1.22 -18.32 16 11 C 0.54 18.82 6.05 87.66 0.53 19.36 16 12 O -0.54 -23.29 12.80 -3.05 -0.04 -23.33 16 13 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 14 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 15 C -0.55 -30.41 9.50 67.95 0.65 -29.76 16 16 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 17 C 0.02 0.90 5.49 84.86 0.47 1.36 16 18 N -0.91 -55.02 13.22 21.65 0.29 -54.74 16 19 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.06 0.79 7.88 -2.39 -0.02 0.77 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.56 7.43 -2.38 -0.02 1.54 16 28 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.07 2.29 7.11 -2.39 -0.02 2.27 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 1.53 6.21 -2.39 -0.01 1.52 16 33 H 0.42 8.06 8.36 -92.71 -0.77 7.28 16 34 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 35 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -73.90 319.49 3.43 -70.48 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.32 Total: 18.95 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 5.10 Total: -14.96 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.82 Total: -87.15 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.04 Total: -23.33 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -73.90 3.43 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338350630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.464 kcal (2) G-P(sol) polarization free energy of solvation -73.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds