Wall clock time and date at job start Tue Mar 31 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38673 * 120.42141 * 2 1 4 4 C 1.38632 * 118.42169 * 180.24162 * 3 2 1 5 5 C 1.38227 * 119.15828 * 359.75200 * 4 3 2 6 6 N 1.31855 * 120.76690 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.72438 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.61683 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47247 * 165.00324 * 8 7 6 10 10 C 1.53006 * 109.46866 * 285.00155 * 8 7 6 11 11 N 1.46500 * 109.46939 * 45.00042 * 8 7 6 12 12 C 1.34781 * 119.99732 * 155.00269 * 11 8 7 13 13 O 1.21283 * 119.99585 * 359.97438 * 12 11 8 14 14 C 1.50697 * 119.99747 * 179.97438 * 12 11 8 15 15 S 1.81010 * 109.46802 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99832 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99715 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00013 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00139 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99630 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46957 * 89.99891 * 20 18 16 22 22 H 1.48507 * 109.46936 * 209.99484 * 20 18 16 23 23 H 1.48495 * 109.47562 * 329.99429 * 20 18 16 24 24 H 1.09004 * 109.47518 * 270.25283 * 1 2 3 25 25 H 1.09001 * 109.46931 * 30.24840 * 1 2 3 26 26 H 1.08995 * 109.47278 * 150.25012 * 1 2 3 27 27 H 1.07998 * 120.79088 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.41786 * 179.73456 * 4 3 2 29 29 H 1.08003 * 119.61284 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 31 31 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 32 32 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 33 33 H 0.96998 * 120.00364 * 334.99781 * 11 8 7 34 34 H 1.08998 * 109.47252 * 299.99651 * 14 12 11 35 35 H 1.09004 * 109.47120 * 60.00384 * 14 12 11 36 36 H 0.96999 * 119.99711 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2255 -0.0824 -0.0048 6 7 3.5254 -1.1997 -0.0002 7 6 2.2065 -1.1917 0.0047 8 6 1.4538 -2.4972 0.0092 9 1 0.4134 -2.3158 0.2789 10 6 1.5173 -3.1273 -1.3836 11 7 2.0597 -3.4068 0.9848 12 6 1.3224 -4.3903 1.5376 13 8 0.1573 -4.5220 1.2276 14 6 1.9458 -5.3263 2.5407 15 16 0.7096 -6.5267 3.0952 16 6 1.6812 -7.4665 4.2256 17 1 2.7183 -7.2123 4.3871 18 6 1.1133 -8.5326 4.9091 19 7 1.8389 -9.2343 5.7539 20 14 -0.6808 -8.9716 4.6301 21 1 -0.7837 -9.9514 3.5189 22 1 -1.2431 -9.5673 5.8688 23 1 -1.4421 -7.7454 4.2809 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6890 2.1423 -0.0004 28 1 4.1735 2.0591 -0.0096 29 1 5.3046 -0.1287 -0.0084 30 1 0.9733 -4.0718 -1.3802 31 1 1.0666 -2.4505 -2.1094 32 1 2.5578 -3.3087 -1.6532 33 1 2.9915 -3.3012 1.2329 34 1 2.7807 -5.8519 2.0773 35 1 2.3059 -4.7547 3.3961 36 1 1.4421 -9.9797 6.2313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347544389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:30 Heat of formation + Delta-G solvation = -34.711091 kcal Electronic energy + Delta-G solvation = -18825.347967 eV Core-core repulsion = 15820.406826 eV Total energy + Delta-G solvation = -3004.941140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66412 -40.45328 -36.69301 -34.68528 -34.66212 -33.33407 -31.51061 -29.87280 -28.20853 -27.85746 -25.55076 -23.40332 -22.40085 -21.47708 -19.96712 -18.33884 -18.04392 -17.31330 -17.10899 -16.53001 -16.50319 -15.81904 -15.57716 -15.40754 -14.94250 -14.73097 -14.62961 -14.21173 -13.94877 -13.66139 -13.45478 -13.34849 -13.32974 -13.17051 -13.01306 -12.80970 -12.62577 -11.91949 -11.85907 -11.17202 -11.07049 -10.67631 -10.55544 -10.50535 -10.17112 -9.76058 -9.00042 -8.51772 -6.22910 0.07270 0.33159 0.97907 1.32054 1.46771 1.52946 1.55823 2.19802 2.26099 2.69755 2.82071 2.86373 3.13990 3.66307 3.81690 3.94593 3.97492 4.12762 4.17216 4.24828 4.30782 4.44282 4.52242 4.57566 4.70739 4.72827 4.81021 4.86912 5.11641 5.18953 5.21799 5.30953 5.43605 5.70431 5.77843 6.11040 6.42960 6.92998 6.98437 7.14786 8.60917 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.003492 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.176277 B = 8017.041079 C = 8358.666673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.161 4.161 5 C 0.081 3.919 6 N -0.498 5.498 7 C 0.098 3.902 8 C 0.191 3.809 9 H 0.099 0.901 10 C -0.150 4.150 11 N -0.705 5.705 12 C 0.538 3.462 13 O -0.556 6.556 14 C -0.112 4.112 15 S -0.166 6.166 16 C -0.532 4.532 17 H 0.060 0.940 18 C 0.045 3.955 19 N -0.918 5.918 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.235 1.235 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 24.734 -14.647 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.180 4.180 5 C -0.076 4.076 6 N -0.207 5.207 7 C -0.039 4.039 8 C 0.086 3.914 9 H 0.117 0.883 10 C -0.209 4.209 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.434 6.434 14 C -0.263 4.263 15 S 0.060 5.940 16 C -0.680 4.680 17 H 0.078 0.922 18 C -0.160 4.160 19 N -0.556 5.556 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.159 1.159 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.181 0.819 28 H 0.185 0.815 29 H 0.195 0.805 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.634 23.579 -15.037 27.972 hybrid contribution 1.167 0.188 0.821 1.439 sum 1.801 23.766 -14.215 27.752 Atomic orbital electron populations 1.20907 0.89180 1.04265 1.03299 1.20917 0.98537 0.93384 1.00482 1.21882 0.94608 0.98442 0.95441 1.22541 0.95431 1.00356 0.99697 1.23216 1.01405 0.87586 0.95412 1.67284 1.07587 1.33361 1.12471 1.20958 0.90299 0.94054 0.98609 1.19893 0.96781 0.84980 0.89708 0.88315 1.22062 1.02727 1.01114 0.94997 1.45830 1.15342 1.30951 1.43701 1.19917 0.86047 0.80862 0.80763 1.90670 1.17756 1.72144 1.62862 1.23264 1.02578 0.99214 1.01269 1.84603 1.18770 1.36334 1.54270 1.22480 0.99343 1.18126 1.28003 0.92190 1.25591 1.02621 0.94515 0.93291 1.70021 1.38636 1.20032 1.26906 0.85845 0.80059 0.81107 0.79223 1.18602 1.18230 1.15904 0.90701 0.88731 0.91246 0.81858 0.81533 0.80518 0.92898 0.89950 0.91879 0.74973 0.87112 0.87223 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.25 71.23 0.66 -1.00 16 2 C -0.13 -2.21 5.90 -19.78 -0.12 -2.32 16 3 C -0.08 -0.95 9.86 22.47 0.22 -0.73 16 4 C -0.16 -1.78 10.11 22.36 0.23 -1.55 16 5 C 0.08 1.22 11.18 84.69 0.95 2.17 16 6 N -0.50 -10.50 9.57 -183.88 -1.76 -12.26 16 7 C 0.10 2.10 5.71 42.54 0.24 2.34 16 8 C 0.19 4.74 2.44 44.25 0.11 4.85 16 9 H 0.10 2.59 5.36 -2.39 -0.01 2.58 16 10 C -0.15 -3.48 9.47 71.98 0.68 -2.80 16 11 N -0.70 -19.99 5.06 -446.08 -2.26 -22.25 16 12 C 0.54 19.66 7.81 87.66 0.68 20.35 16 13 O -0.56 -23.93 15.52 -3.04 -0.05 -23.98 16 14 C -0.11 -4.48 6.16 71.23 0.44 -4.04 16 15 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 16 C -0.53 -31.61 10.04 67.95 0.68 -30.93 16 17 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 18 C 0.05 2.69 5.50 84.86 0.47 3.15 16 19 N -0.92 -56.66 13.97 21.65 0.30 -56.36 16 20 Si 0.92 45.39 27.74 68.60 1.90 47.30 16 21 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 24 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 26 H 0.07 1.06 6.41 -2.39 -0.02 1.05 16 27 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 28 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 10.54 8.04 -92.71 -0.75 9.80 16 34 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 35 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 36 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -74.40 322.06 2.65 -71.75 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.31 Total: 15.93 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.24 Total: -10.52 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.71 Total: -90.87 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -74.40 2.65 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.039 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds