Wall clock time and date at job start Tue Mar 31 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 C 1.50701 * 109.47428 * 239.99273 * 2 1 3 5 5 H 1.07992 * 120.00921 * 239.58339 * 4 2 1 6 6 C 1.37883 * 119.99282 * 59.58017 * 4 2 1 7 7 N 1.31514 * 119.99576 * 194.56250 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 14.57081 * 6 4 2 9 9 H 1.48505 * 109.47258 * 88.48119 * 8 6 4 10 10 H 1.48498 * 109.47054 * 208.48406 * 8 6 4 11 11 H 1.48497 * 109.46938 * 328.48488 * 8 6 4 12 12 C 1.53005 * 109.46879 * 119.99831 * 2 1 3 13 13 N 1.46492 * 109.47146 * 300.00094 * 12 2 1 14 14 C 1.34778 * 120.00109 * 179.97438 * 13 12 2 15 15 O 1.21726 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46252 * 120.00083 * 179.97438 * 14 13 12 17 17 C 1.35246 * 120.00187 * 183.54901 * 16 14 13 18 18 C 1.46407 * 119.99633 * 7.26603 * 17 16 14 19 19 N 1.30822 * 125.55039 * 231.00013 * 18 17 16 20 20 C 1.30810 * 115.81294 * 180.02562 * 19 18 17 21 21 C 1.34164 * 115.80675 * 359.97438 * 20 19 18 22 22 S 1.71056 * 109.15328 * 359.72637 * 21 20 19 23 23 H 1.09003 * 109.46886 * 315.11812 * 1 2 3 24 24 H 1.09003 * 109.46837 * 75.11544 * 1 2 3 25 25 H 1.08998 * 109.47204 * 195.11331 * 1 2 3 26 26 H 1.08998 * 109.47258 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46831 * 299.99464 * 3 2 1 28 28 H 1.09002 * 109.47347 * 59.99751 * 3 2 1 29 29 H 0.97007 * 119.99563 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47045 * 179.97438 * 12 2 1 31 31 H 1.09007 * 109.47201 * 59.99935 * 12 2 1 32 32 H 0.97003 * 120.00150 * 359.97438 * 13 12 2 33 33 H 1.07996 * 119.99976 * 3.27520 * 16 14 13 34 34 H 1.07991 * 120.00161 * 187.26936 * 17 16 14 35 35 H 1.08002 * 122.09812 * 180.02562 * 20 19 18 36 36 H 1.08004 * 125.42182 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6588 -1.5846 -1.1313 6 6 1.6921 -0.2446 -2.4827 7 7 1.8784 -1.0043 -3.5399 8 14 0.9668 1.4657 -2.6776 9 1 2.0638 2.4525 -2.8457 10 1 0.0858 1.4965 -3.8727 11 1 0.1742 1.8079 -1.4694 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8767 -0.4914 3.6695 15 8 2.5765 -1.4811 3.7813 16 6 1.3896 0.1984 4.8636 17 6 1.7740 -0.2206 6.0908 18 6 2.7982 -1.2584 6.2223 19 7 2.6919 -2.3450 6.9430 20 6 3.7268 -3.1449 6.9236 21 6 4.7599 -2.7451 6.1667 22 16 4.3707 -1.2513 5.4297 23 1 -0.3633 0.7282 0.7252 24 1 -0.3633 0.2640 -0.9932 25 1 -0.3633 -0.9921 0.2679 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6393 -0.6764 -4.4210 30 1 3.1299 -0.7217 1.2491 31 1 1.6765 -1.7490 1.2494 32 1 0.9942 0.7583 2.3564 33 1 0.7265 1.0451 4.7654 34 1 1.3254 0.2103 6.9735 35 1 3.7480 -4.0695 7.4813 36 1 5.6874 -3.2834 6.0388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349533845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:21 Heat of formation + Delta-G solvation = 49.646542 kcal Electronic energy + Delta-G solvation = -19451.620425 eV Core-core repulsion = 16450.337306 eV Total energy + Delta-G solvation = -3001.283119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78212 -39.10243 -36.87679 -33.74587 -33.37998 -31.54485 -29.65218 -26.72608 -26.39336 -25.33984 -24.75816 -22.48617 -20.32867 -19.75324 -19.07216 -17.87741 -16.84947 -16.12260 -15.62044 -15.30795 -15.05928 -14.80251 -14.59219 -13.79192 -13.49236 -13.33915 -13.01815 -12.92065 -12.77192 -12.54847 -12.22857 -12.05193 -11.42276 -11.21292 -10.47299 -10.39152 -10.24911 -10.17910 -10.12401 -9.99646 -9.42466 -9.26886 -9.16643 -8.72462 -8.54361 -8.45139 -7.94054 -6.17805 -4.14915 0.33857 1.35176 1.78677 2.00327 2.99612 3.21788 3.28707 3.35952 3.44948 3.61699 4.22882 4.32955 4.92491 5.05025 5.12788 5.23677 5.31170 5.59321 5.70041 5.83209 5.93220 6.01742 6.02247 6.29765 6.33122 6.45823 6.48796 6.59380 6.66106 6.72376 6.91273 7.18291 7.38740 7.69020 7.81780 7.85580 8.40310 8.50448 8.87774 9.46166 10.95208 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.004062 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.939186 B = 6892.297407 C = 7257.173045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.286 1.286 10 H -0.304 1.304 11 H -0.247 1.247 12 C 0.142 3.858 13 N -0.710 5.710 14 C 0.520 3.480 15 O -0.537 6.537 16 C -0.177 4.177 17 C -0.004 4.004 18 C 0.053 3.947 19 N -0.455 5.455 20 C 0.022 3.978 21 C -0.305 4.305 22 S 0.251 5.749 23 H 0.023 0.977 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 4.850 18.735 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.173 1.173 12 C 0.020 3.980 13 N -0.359 5.359 14 C 0.307 3.693 15 O -0.418 6.418 16 C -0.203 4.203 17 C -0.027 4.027 18 C -0.218 4.218 19 N -0.170 5.170 20 C -0.136 4.136 21 C -0.446 4.446 22 S 0.511 5.489 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.768 4.676 18.178 18.853 hybrid contribution -0.626 0.289 -0.016 0.689 sum 1.143 4.965 18.162 18.863 Atomic orbital electron populations 1.22265 0.97782 0.99331 1.00219 1.18729 0.92504 0.92340 0.93784 1.22393 1.01118 0.98237 0.98706 1.20701 1.32854 1.13635 0.87994 0.90614 1.24973 0.94701 0.97194 0.95821 1.69965 1.47860 1.35769 0.99065 0.87352 0.79323 0.85475 0.76501 1.21350 1.23215 1.17253 1.21542 0.98633 0.95864 0.81996 1.46285 1.52045 1.31406 1.06169 1.18495 0.81242 0.85394 0.84134 1.90946 1.37650 1.26555 1.86669 1.23387 1.02849 1.01628 0.92414 1.21420 0.91649 0.91936 0.97687 1.25894 0.98415 0.97692 0.99848 1.67001 1.27402 1.02439 1.20153 1.21437 0.88745 1.01294 1.02135 1.26587 1.06477 1.05090 1.06489 1.83604 1.09106 1.16154 1.40037 0.95835 0.92726 0.93555 0.92877 0.93852 0.95243 0.92558 0.91843 0.91780 0.76800 0.83888 0.83095 0.81810 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.34 37.16 0.27 -2.47 16 2 C 0.03 0.58 0.50 -155.66 -0.08 0.50 16 3 C -0.15 -2.86 7.50 37.16 0.28 -2.58 16 4 C -0.51 -13.56 8.62 -34.44 -0.30 -13.86 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.08 2.08 5.27 -17.82 -0.09 1.98 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.88 20.60 22.83 -169.99 -3.88 16.72 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 11 H -0.25 -5.19 4.58 56.52 0.26 -4.93 16 12 C 0.14 2.73 4.45 -4.04 -0.02 2.71 16 13 N -0.71 -10.85 5.00 -61.76 -0.31 -11.16 16 14 C 0.52 7.87 7.49 -13.04 -0.10 7.77 16 15 O -0.54 -9.82 11.62 5.17 0.06 -9.76 16 16 C -0.18 -1.93 10.07 -37.43 -0.38 -2.30 16 17 C 0.00 -0.04 10.23 -37.36 -0.38 -0.43 16 18 C 0.05 0.75 5.70 -14.70 -0.08 0.66 16 19 N -0.46 -6.90 10.67 -11.70 -0.12 -7.02 16 20 C 0.02 0.29 11.24 -19.42 -0.22 0.07 16 21 C -0.31 -3.86 11.08 29.30 0.32 -3.53 16 22 S 0.25 3.39 19.84 -107.50 -2.13 1.25 16 23 H 0.02 0.38 7.26 -51.93 -0.38 0.00 16 24 H 0.05 1.17 4.41 -51.93 -0.23 0.94 16 25 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.90 2.37 -51.93 -0.12 0.77 16 28 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.40 5.14 6.35 -40.82 -0.26 4.89 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -32.00 300.46 -6.27 -38.28 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.42 Total: 4.20 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.77 Total: -11.45 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.34 Total: -43.77 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.06 Total: -9.76 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -3.88 Total: 16.72 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.13 Total: 1.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.00 -6.27 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349533845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.923 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds