Wall clock time and date at job start Tue Mar 31 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 C 1.50701 * 109.47428 * 239.99273 * 2 1 3 5 5 H 1.07992 * 120.00921 * 239.58339 * 4 2 1 6 6 C 1.37883 * 119.99282 * 59.58017 * 4 2 1 7 7 N 1.31514 * 119.99576 * 194.56250 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 14.57081 * 6 4 2 9 9 H 1.48505 * 109.47258 * 88.48119 * 8 6 4 10 10 H 1.48498 * 109.47054 * 208.48406 * 8 6 4 11 11 H 1.48497 * 109.46938 * 328.48488 * 8 6 4 12 12 C 1.53005 * 109.46879 * 119.99831 * 2 1 3 13 13 N 1.46492 * 109.47146 * 300.00094 * 12 2 1 14 14 C 1.34778 * 120.00109 * 179.97438 * 13 12 2 15 15 O 1.21726 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46252 * 120.00083 * 179.97438 * 14 13 12 17 17 C 1.35246 * 120.00187 * 183.54901 * 16 14 13 18 18 C 1.46407 * 119.99633 * 7.26603 * 17 16 14 19 19 N 1.30822 * 125.55039 * 231.00013 * 18 17 16 20 20 C 1.30810 * 115.81294 * 180.02562 * 19 18 17 21 21 C 1.34164 * 115.80675 * 359.97438 * 20 19 18 22 22 S 1.71056 * 109.15328 * 359.72637 * 21 20 19 23 23 H 1.09003 * 109.46886 * 315.11812 * 1 2 3 24 24 H 1.09003 * 109.46837 * 75.11544 * 1 2 3 25 25 H 1.08998 * 109.47204 * 195.11331 * 1 2 3 26 26 H 1.08998 * 109.47258 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46831 * 299.99464 * 3 2 1 28 28 H 1.09002 * 109.47347 * 59.99751 * 3 2 1 29 29 H 0.97007 * 119.99563 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47045 * 179.97438 * 12 2 1 31 31 H 1.09007 * 109.47201 * 59.99935 * 12 2 1 32 32 H 0.97003 * 120.00150 * 359.97438 * 13 12 2 33 33 H 1.07996 * 119.99976 * 3.27520 * 16 14 13 34 34 H 1.07991 * 120.00161 * 187.26936 * 17 16 14 35 35 H 1.08002 * 122.09812 * 180.02562 * 20 19 18 36 36 H 1.08004 * 125.42182 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6588 -1.5846 -1.1313 6 6 1.6921 -0.2446 -2.4827 7 7 1.8784 -1.0043 -3.5399 8 14 0.9668 1.4657 -2.6776 9 1 2.0638 2.4525 -2.8457 10 1 0.0858 1.4965 -3.8727 11 1 0.1742 1.8079 -1.4694 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8767 -0.4914 3.6695 15 8 2.5765 -1.4811 3.7813 16 6 1.3896 0.1984 4.8636 17 6 1.7740 -0.2206 6.0908 18 6 2.7982 -1.2584 6.2223 19 7 2.6919 -2.3450 6.9430 20 6 3.7268 -3.1449 6.9236 21 6 4.7599 -2.7451 6.1667 22 16 4.3707 -1.2513 5.4297 23 1 -0.3633 0.7282 0.7252 24 1 -0.3633 0.2640 -0.9932 25 1 -0.3633 -0.9921 0.2679 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6393 -0.6764 -4.4210 30 1 3.1299 -0.7217 1.2491 31 1 1.6765 -1.7490 1.2494 32 1 0.9942 0.7583 2.3564 33 1 0.7265 1.0451 4.7654 34 1 1.3254 0.2103 6.9735 35 1 3.7480 -4.0695 7.4813 36 1 5.6874 -3.2834 6.0388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349533845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:20 Heat of formation + Delta-G solvation = 25.782383 kcal Electronic energy + Delta-G solvation = -19452.655253 eV Core-core repulsion = 16450.337306 eV Total energy + Delta-G solvation = -3002.317947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95921 -40.19187 -38.44754 -35.02071 -34.63571 -33.41939 -30.66339 -28.09155 -27.92597 -27.06488 -26.14814 -23.62484 -21.39911 -21.01960 -20.56795 -19.01577 -18.13345 -17.79955 -17.02967 -16.73590 -16.36470 -16.03007 -15.70843 -14.96334 -14.87978 -14.72700 -14.58843 -14.27703 -14.00950 -13.91269 -13.71138 -13.56383 -12.91240 -12.38691 -12.28013 -12.10884 -11.97283 -11.74621 -11.24251 -11.11155 -11.02206 -10.60667 -10.46501 -10.40504 -10.34946 -9.73294 -8.99791 -8.29487 -6.30880 -0.61522 0.39588 0.82192 0.99670 1.39052 1.39394 1.52237 1.96283 2.34590 2.36573 2.43671 3.07105 3.34528 3.93873 4.12798 4.20757 4.34853 4.36015 4.44911 4.58422 4.62309 4.79524 4.87401 4.88516 4.96380 4.99416 5.10457 5.14606 5.21320 5.39384 5.45936 5.58015 5.74861 5.82218 6.31300 6.69363 6.75083 6.79726 7.33590 7.35232 8.87858 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.004062 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.939186 B = 6892.297407 C = 7257.173045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.026 3.974 3 C -0.146 4.146 4 C -0.518 4.518 5 H 0.024 0.976 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.943 3.057 9 H -0.283 1.283 10 H -0.315 1.315 11 H -0.197 1.197 12 C 0.160 3.840 13 N -0.699 5.699 14 C 0.512 3.488 15 O -0.575 6.575 16 C -0.168 4.168 17 C -0.004 4.004 18 C 0.043 3.957 19 N -0.482 5.482 20 C 0.005 3.995 21 C -0.308 4.308 22 S 0.228 5.772 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.414 0.586 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 7.892 21.264 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.042 0.958 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.210 1.210 10 H -0.245 1.245 11 H -0.120 1.120 12 C 0.036 3.964 13 N -0.351 5.351 14 C 0.302 3.698 15 O -0.458 6.458 16 C -0.193 4.193 17 C -0.027 4.027 18 C -0.229 4.229 19 N -0.197 5.197 20 C -0.151 4.151 21 C -0.449 4.449 22 S 0.488 5.512 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.252 0.748 33 H 0.210 0.790 34 H 0.209 0.791 35 H 0.202 0.798 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.050 7.738 20.763 22.158 hybrid contribution 0.044 -0.841 -0.754 1.131 sum -0.006 6.897 20.009 21.164 Atomic orbital electron populations 1.22195 0.96018 1.00563 1.00744 1.18672 0.93763 0.93348 0.91732 1.22314 1.00915 0.96512 1.00559 1.21046 1.31531 1.12330 0.90746 0.95805 1.25900 0.95539 1.01558 0.95227 1.70137 1.50580 1.38281 0.99763 0.86378 0.79014 0.79723 0.77778 1.21042 1.24501 1.12006 1.20974 0.97319 0.94719 0.83364 1.45992 1.52394 1.31715 1.04969 1.19299 0.80385 0.85069 0.85068 1.90951 1.39194 1.28415 1.87196 1.23520 1.03475 1.02520 0.89830 1.21937 0.90603 0.90791 0.99322 1.26522 0.99058 0.98157 0.99115 1.67034 1.28206 1.03217 1.21209 1.21849 0.88679 1.02041 1.02580 1.26856 1.07310 1.04785 1.05932 1.83615 1.09878 1.17031 1.40665 0.91037 0.94167 0.94273 0.93601 0.94611 0.90384 0.92756 0.93847 0.94672 0.74830 0.78963 0.79077 0.79806 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 7.34 71.98 0.53 -4.48 16 2 C 0.03 1.06 0.50 -52.93 -0.03 1.03 16 3 C -0.15 -5.12 7.50 71.98 0.54 -4.58 16 4 C -0.52 -28.27 8.62 25.60 0.22 -28.05 16 5 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 6 C 0.01 0.84 5.27 84.66 0.45 1.28 16 7 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 8 Si 0.94 41.72 22.83 68.60 1.57 43.29 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.32 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.20 -7.16 4.58 99.48 0.46 -6.71 16 12 C 0.16 6.11 4.45 86.38 0.38 6.50 16 13 N -0.70 -19.25 5.00 -467.50 -2.34 -21.59 16 14 C 0.51 14.23 7.49 86.33 0.65 14.88 16 15 O -0.57 -20.68 11.62 -4.43 -0.05 -20.73 16 16 C -0.17 -2.90 10.07 23.66 0.24 -2.67 16 17 C 0.00 -0.07 10.23 23.71 0.24 0.17 16 18 C 0.04 1.15 5.70 86.97 0.50 1.64 16 19 N -0.48 -14.05 10.67 -190.91 -2.04 -16.09 16 20 C 0.01 0.14 11.24 83.92 0.94 1.08 16 21 C -0.31 -7.63 11.08 66.89 0.74 -6.89 16 22 S 0.23 6.05 19.84 -56.49 -1.12 4.93 16 23 H 0.07 1.92 7.26 -2.39 -0.02 1.90 16 24 H 0.04 1.57 4.41 -2.39 -0.01 1.56 16 25 H 0.04 1.45 8.05 -2.39 -0.02 1.43 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.32 2.37 -2.39 -0.01 1.31 16 28 H 0.08 1.98 6.86 -2.39 -0.02 1.97 16 29 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.41 8.45 6.35 -92.71 -0.59 7.86 16 33 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.19 1.90 8.06 -2.92 -0.02 1.87 16 35 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -75.19 300.46 1.99 -73.21 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.27 Total: 15.53 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.40 Total: -20.07 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.08 Total: -96.14 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.57 Total: 43.29 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.12 Total: 4.93 kcal Total: -75.19 1.99 -73.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349533845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.988 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds