Wall clock time and date at job start Tue Mar 31 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47121 * 29.41408 * 3 2 1 5 5 C 1.36819 * 120.00014 * 274.90616 * 4 3 2 6 6 H 1.07996 * 119.99760 * 188.27751 * 5 4 3 7 7 C 1.39079 * 120.00066 * 8.27097 * 5 4 3 8 8 N 1.31339 * 120.00128 * 14.68194 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 194.67720 * 7 5 4 10 10 H 1.48501 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47112 * 120.00418 * 9 7 5 12 12 H 1.48499 * 109.47329 * 240.00576 * 9 7 5 13 13 C 1.34773 * 119.99782 * 94.90882 * 4 3 2 14 14 O 1.21594 * 119.99821 * 184.94469 * 13 4 3 15 15 C 1.47740 * 120.00075 * 4.93280 * 13 4 3 16 16 C 1.40646 * 119.71273 * 129.79993 * 15 13 4 17 17 C 1.35777 * 120.73099 * 180.02562 * 16 15 13 18 18 C 1.40579 * 119.99599 * 359.97438 * 17 16 15 19 19 C 1.40789 * 121.13121 * 180.02562 * 18 17 16 20 20 C 1.36579 * 118.20373 * 179.97438 * 19 18 17 21 21 C 1.39402 * 119.94425 * 359.97438 * 20 19 18 22 22 N 1.31031 * 121.70770 * 359.97438 * 21 20 19 23 23 C 1.33753 * 121.34808 * 0.02562 * 22 21 20 24 24 C 1.38504 * 119.72096 * 309.82189 * 15 13 4 25 25 H 4.40646 * 5.51385 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.46881 * 269.41487 * 3 2 1 27 27 H 1.08995 * 109.47136 * 149.41608 * 3 2 1 28 28 H 0.97002 * 120.00144 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.63392 * 0.02770 * 16 15 13 30 30 H 1.08004 * 120.00469 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.90223 * 359.93993 * 19 18 17 32 32 H 1.07998 * 120.03032 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.14840 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.23222 * 359.70679 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2023 -0.6783 5 6 3.2679 -2.3733 0.0167 6 1 3.7515 -3.2223 -0.4434 7 6 2.7804 -2.4702 1.3156 8 7 1.9497 -1.5624 1.7748 9 14 3.3069 -3.8917 2.4072 10 1 4.2415 -4.7705 1.6592 11 1 3.9871 -3.3617 3.6162 12 1 2.1112 -4.6726 2.8142 13 6 3.4536 -1.1554 -1.9870 14 8 3.7731 -2.1725 -2.5717 15 6 3.4145 0.1317 -2.7112 16 6 4.5199 0.5306 -3.4840 17 6 4.5064 1.7095 -4.1576 18 6 3.3788 2.5461 -4.0874 19 6 3.3389 3.7732 -4.7765 20 6 2.2132 4.5388 -4.6668 21 6 1.1444 4.0971 -3.8885 22 7 1.1842 2.9540 -3.2492 23 6 2.2564 2.1571 -3.3145 24 6 2.2900 0.9354 -2.6229 25 1 -1.0499 -0.0002 -0.0003 26 1 3.0093 0.0113 1.0276 27 1 3.0089 0.8855 -0.5229 28 1 1.6094 -1.6302 2.6806 29 1 5.3890 -0.1078 -3.5424 30 1 5.3618 2.0044 -4.7472 31 1 4.1760 4.1006 -5.3752 32 1 2.1508 5.4852 -5.1833 33 1 0.2606 4.7129 -3.8104 34 1 1.4425 0.6218 -2.0314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459386136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:21 Heat of formation + Delta-G solvation = 103.082022 kcal Electronic energy + Delta-G solvation = -20848.942832 eV Core-core repulsion = 17714.532898 eV Total energy + Delta-G solvation = -3134.409934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65849 -38.87512 -36.39557 -35.26240 -33.40147 -32.07672 -31.34207 -30.35324 -29.75654 -26.52210 -25.34765 -24.03498 -23.34353 -21.91636 -20.11154 -18.01479 -17.67597 -17.03123 -16.74514 -16.44954 -15.69817 -14.74155 -14.38582 -14.34244 -14.33016 -13.97223 -13.70656 -13.37862 -12.97545 -12.77032 -12.44642 -12.17163 -11.65095 -11.49806 -11.36835 -11.21428 -11.03700 -10.54913 -10.44043 -10.27887 -9.49221 -9.38071 -9.24285 -8.78462 -8.68374 -8.44473 -8.07177 -7.96309 -6.38910 -3.92124 0.51660 0.91661 2.13035 2.91543 3.13175 3.20624 3.27222 3.73311 3.85380 4.10733 4.16607 4.30951 4.43293 4.68183 4.77752 4.88959 4.94419 5.01460 5.15530 5.31912 5.50314 5.54243 5.63304 5.70342 5.94973 6.04180 6.09695 6.28966 6.33659 6.51197 6.64458 6.76721 6.87742 7.00699 7.12102 7.44798 7.89209 8.06491 8.32230 8.89877 9.01338 9.22946 9.77867 10.54597 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.005278 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.350267 B = 5303.778777 C = 6079.336978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.099 4.099 3 C 0.224 3.776 4 N -0.423 5.423 5 C -0.305 4.305 6 H 0.111 0.889 7 C 0.029 3.971 8 N -0.861 5.861 9 Si 0.932 3.068 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.470 3.530 14 O -0.581 6.581 15 C -0.073 4.073 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.100 4.100 19 C -0.060 4.060 20 C -0.182 4.182 21 C 0.121 3.879 22 N -0.464 5.464 23 C 0.124 3.876 24 C -0.078 4.078 25 H 0.199 0.801 26 H 0.118 0.882 27 H 0.063 0.937 28 H 0.271 0.729 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 12.578 -7.333 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.101 4.101 3 C 0.102 3.898 4 N -0.138 5.138 5 C -0.433 4.433 6 H 0.129 0.871 7 C -0.175 4.175 8 N -0.499 5.499 9 Si 0.758 3.242 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.260 3.740 14 O -0.467 6.467 15 C -0.079 4.079 16 C -0.090 4.090 17 C -0.131 4.131 18 C -0.102 4.102 19 C -0.086 4.086 20 C -0.202 4.202 21 C -0.053 4.053 22 N -0.172 5.172 23 C 0.004 3.996 24 C -0.098 4.098 25 H 0.216 0.784 26 H 0.136 0.864 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.088 11.682 -6.827 13.575 hybrid contribution 0.441 -0.252 0.179 0.538 sum 1.529 11.430 -6.649 13.311 Atomic orbital electron populations 1.24214 0.95319 1.03486 1.05212 1.22777 0.94016 0.97247 0.96033 1.18621 0.84756 0.86271 1.00182 1.43713 1.53451 1.09766 1.06910 1.19878 1.36148 0.91848 0.95402 0.87150 1.25390 0.95138 0.99033 0.97959 1.70012 1.27420 1.34830 1.17609 0.85771 0.78655 0.80382 0.79413 1.19067 1.20450 1.20671 1.17784 0.86569 0.87618 0.82065 1.90634 1.54810 1.34726 1.66505 1.20294 0.94312 0.95297 0.97972 1.20939 0.97856 0.95657 0.94535 1.20795 0.97202 0.94520 1.00591 1.18887 0.95853 0.96065 0.99373 1.21424 0.98064 0.92687 0.96468 1.21835 0.95102 1.01462 1.01830 1.22917 0.97839 0.92483 0.92051 1.68051 1.25394 1.04439 1.19317 1.18782 0.89628 0.94820 0.96359 1.21759 0.98938 0.91368 0.97686 0.78432 0.86433 0.91945 0.91772 0.84923 0.85201 0.84715 0.84937 0.82722 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.73 19.04 29.55 0.56 -5.17 16 2 C -0.10 -2.30 8.70 -37.12 -0.32 -2.63 16 3 C 0.22 5.18 4.76 -6.83 -0.03 5.15 16 4 N -0.42 -10.83 2.59 -119.06 -0.31 -11.14 16 5 C -0.31 -8.31 9.46 -15.01 -0.14 -8.45 16 6 H 0.11 3.14 7.26 -52.49 -0.38 2.76 16 7 C 0.03 0.74 5.17 -17.45 -0.09 0.65 16 8 N -0.86 -21.98 8.38 55.50 0.47 -21.52 16 9 Si 0.93 20.15 29.58 -169.99 -5.03 15.12 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.47 11.80 7.14 -12.38 -0.09 11.71 16 14 O -0.58 -16.37 16.65 5.28 0.09 -16.28 16 15 C -0.07 -1.52 4.89 -105.01 -0.51 -2.03 16 16 C -0.07 -1.22 9.62 -39.55 -0.38 -1.60 16 17 C -0.11 -1.59 9.73 -39.58 -0.39 -1.97 16 18 C -0.10 -1.49 5.75 -106.72 -0.61 -2.10 16 19 C -0.06 -0.69 9.88 -39.22 -0.39 -1.07 16 20 C -0.18 -1.89 10.03 -39.75 -0.40 -2.29 16 21 C 0.12 1.50 11.15 -17.46 -0.19 1.30 16 22 N -0.46 -7.74 10.34 -10.98 -0.11 -7.85 16 23 C 0.12 2.20 6.60 -84.88 -0.56 1.64 16 24 C -0.08 -1.55 7.51 -38.66 -0.29 -1.84 16 25 H 0.20 3.57 7.80 -54.10 -0.42 3.15 16 26 H 0.12 2.82 6.29 -51.93 -0.33 2.50 16 27 H 0.06 1.31 5.55 -51.93 -0.29 1.02 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.15 3.24 4.73 -52.49 -0.25 2.99 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -31.85 298.51 -7.15 -39.00 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.91 Total: 6.86 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.84 Total: -8.70 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.04 Total: -40.50 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.09 Total: -16.28 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.85 -7.15 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459386136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.083 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds