Wall clock time and date at job start Tue Mar 31 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47121 * 29.41408 * 3 2 1 5 5 C 1.36819 * 120.00014 * 274.90616 * 4 3 2 6 6 H 1.07996 * 119.99760 * 188.27751 * 5 4 3 7 7 C 1.39079 * 120.00066 * 8.27097 * 5 4 3 8 8 N 1.31339 * 120.00128 * 14.68194 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 194.67720 * 7 5 4 10 10 H 1.48501 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47112 * 120.00418 * 9 7 5 12 12 H 1.48499 * 109.47329 * 240.00576 * 9 7 5 13 13 C 1.34773 * 119.99782 * 94.90882 * 4 3 2 14 14 O 1.21594 * 119.99821 * 184.94469 * 13 4 3 15 15 C 1.47740 * 120.00075 * 4.93280 * 13 4 3 16 16 C 1.40646 * 119.71273 * 129.79993 * 15 13 4 17 17 C 1.35777 * 120.73099 * 180.02562 * 16 15 13 18 18 C 1.40579 * 119.99599 * 359.97438 * 17 16 15 19 19 C 1.40789 * 121.13121 * 180.02562 * 18 17 16 20 20 C 1.36579 * 118.20373 * 179.97438 * 19 18 17 21 21 C 1.39402 * 119.94425 * 359.97438 * 20 19 18 22 22 N 1.31031 * 121.70770 * 359.97438 * 21 20 19 23 23 C 1.33753 * 121.34808 * 0.02562 * 22 21 20 24 24 C 1.38504 * 119.72096 * 309.82189 * 15 13 4 25 25 H 4.40646 * 5.51385 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.46881 * 269.41487 * 3 2 1 27 27 H 1.08995 * 109.47136 * 149.41608 * 3 2 1 28 28 H 0.97002 * 120.00144 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.63392 * 0.02770 * 16 15 13 30 30 H 1.08004 * 120.00469 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.90223 * 359.93993 * 19 18 17 32 32 H 1.07998 * 120.03032 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.14840 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.23222 * 359.70679 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2023 -0.6783 5 6 3.2679 -2.3733 0.0167 6 1 3.7515 -3.2223 -0.4434 7 6 2.7804 -2.4702 1.3156 8 7 1.9497 -1.5624 1.7748 9 14 3.3069 -3.8917 2.4072 10 1 4.2415 -4.7705 1.6592 11 1 3.9871 -3.3617 3.6162 12 1 2.1112 -4.6726 2.8142 13 6 3.4536 -1.1554 -1.9870 14 8 3.7731 -2.1725 -2.5717 15 6 3.4145 0.1317 -2.7112 16 6 4.5199 0.5306 -3.4840 17 6 4.5064 1.7095 -4.1576 18 6 3.3788 2.5461 -4.0874 19 6 3.3389 3.7732 -4.7765 20 6 2.2132 4.5388 -4.6668 21 6 1.1444 4.0971 -3.8885 22 7 1.1842 2.9540 -3.2492 23 6 2.2564 2.1571 -3.3145 24 6 2.2900 0.9354 -2.6229 25 1 -1.0499 -0.0002 -0.0003 26 1 3.0093 0.0113 1.0276 27 1 3.0089 0.8855 -0.5229 28 1 1.6094 -1.6302 2.6806 29 1 5.3890 -0.1078 -3.5424 30 1 5.3618 2.0044 -4.7472 31 1 4.1760 4.1006 -5.3752 32 1 2.1508 5.4852 -5.1833 33 1 0.2606 4.7129 -3.8104 34 1 1.4425 0.6218 -2.0314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459386136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:20 Heat of formation + Delta-G solvation = 83.377653 kcal Electronic energy + Delta-G solvation = -20849.797278 eV Core-core repulsion = 17714.532898 eV Total energy + Delta-G solvation = -3135.264380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88194 -40.58693 -37.73554 -37.20227 -34.62768 -33.83335 -33.21412 -31.58674 -31.00886 -28.38475 -27.08176 -25.32959 -24.64074 -23.09754 -21.72574 -19.88031 -19.11717 -18.45127 -18.24190 -17.84697 -17.29252 -16.43758 -16.01172 -15.95365 -15.59581 -15.26776 -15.11047 -14.79116 -14.31900 -14.18916 -14.00001 -13.81289 -13.45411 -12.90558 -12.81679 -12.69026 -12.47333 -12.41053 -12.14688 -11.47157 -11.37419 -11.09782 -10.70539 -10.52439 -10.35943 -10.02608 -9.72615 -9.22139 -8.34594 -5.99426 -0.62161 -0.23814 0.98264 1.32162 1.39874 1.54165 1.65181 2.01928 2.12269 2.30487 2.37187 2.97610 3.02479 3.14153 3.41621 3.64414 3.77943 3.89136 3.92965 4.09327 4.13520 4.17279 4.42731 4.53363 4.63694 4.81622 4.95521 4.96307 5.00085 5.15953 5.33999 5.36989 5.38371 5.41251 5.58708 5.85771 5.92888 6.33634 7.00591 7.02016 7.11243 7.26851 7.82270 8.57026 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.005278 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.350267 B = 5303.778777 C = 6079.336978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.133 4.133 3 C 0.235 3.765 4 N -0.434 5.434 5 C -0.350 4.350 6 H 0.083 0.917 7 C 0.001 3.999 8 N -0.870 5.870 9 Si 0.997 3.003 10 H -0.273 1.273 11 H -0.262 1.262 12 H -0.276 1.276 13 C 0.462 3.538 14 O -0.628 6.628 15 C -0.095 4.095 16 C -0.099 4.099 17 C -0.079 4.079 18 C -0.111 4.111 19 C -0.053 4.053 20 C -0.166 4.166 21 C 0.126 3.874 22 N -0.512 5.512 23 C 0.103 3.897 24 C -0.092 4.092 25 H 0.232 0.768 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.276 0.724 29 H 0.133 0.867 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.188 0.812 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 16.138 -8.814 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.135 4.135 3 C 0.113 3.887 4 N -0.149 5.149 5 C -0.477 4.477 6 H 0.101 0.899 7 C -0.202 4.202 8 N -0.507 5.507 9 Si 0.820 3.180 10 H -0.198 1.198 11 H -0.187 1.187 12 H -0.201 1.201 13 C 0.253 3.747 14 O -0.517 6.517 15 C -0.100 4.100 16 C -0.118 4.118 17 C -0.097 4.097 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.185 4.185 21 C -0.047 4.047 22 N -0.221 5.221 23 C -0.016 4.016 24 C -0.112 4.112 25 H 0.248 0.752 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.197 0.803 31 H 0.199 0.801 32 H 0.200 0.800 33 H 0.205 0.795 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.188 15.284 -8.294 17.430 hybrid contribution 0.268 -1.079 0.486 1.214 sum 1.456 14.205 -7.808 16.275 Atomic orbital electron populations 1.25046 0.96276 1.02058 1.03880 1.23038 0.94615 0.98561 0.97277 1.18496 0.85093 0.85953 0.99132 1.43879 1.53624 1.10048 1.07328 1.19802 1.38633 0.92401 0.96864 0.89865 1.26143 0.94424 1.01485 0.98167 1.70122 1.27016 1.35654 1.17906 0.84823 0.78185 0.77284 0.77681 1.19773 1.18701 1.20132 1.18589 0.85120 0.89008 0.81996 1.90559 1.56638 1.36963 1.67537 1.19982 0.96523 0.93827 0.99660 1.20970 0.97085 0.97673 0.96079 1.21253 0.98082 0.92178 0.98163 1.19230 0.94912 0.97850 0.99313 1.21949 0.99850 0.90595 0.95427 1.22378 0.93430 1.02696 0.99984 1.23710 0.99696 0.91047 0.90281 1.68022 1.25794 1.06395 1.21872 1.18763 0.91380 0.94290 0.97169 1.21513 0.97881 0.92974 0.98794 0.75169 0.87895 0.90457 0.91312 0.84942 0.80304 0.80142 0.80018 0.79469 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.28 19.04 74.32 1.42 -9.87 16 2 C -0.13 -6.50 8.70 31.12 0.27 -6.22 16 3 C 0.24 11.58 4.76 84.57 0.40 11.99 16 4 N -0.43 -23.93 2.59 -648.85 -1.68 -25.61 16 5 C -0.35 -20.39 9.46 84.12 0.80 -19.60 16 6 H 0.08 5.17 7.26 -2.91 -0.02 5.15 16 7 C 0.00 0.06 5.17 84.97 0.44 0.50 16 8 N -0.87 -45.71 8.38 21.68 0.18 -45.53 16 9 Si 1.00 42.54 29.58 68.60 2.03 44.57 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.46 25.12 7.14 86.76 0.62 25.74 16 14 O -0.63 -38.41 16.65 -4.01 -0.07 -38.48 16 15 C -0.09 -4.17 4.89 -20.11 -0.10 -4.27 16 16 C -0.10 -3.48 9.62 22.29 0.21 -3.26 16 17 C -0.08 -2.02 9.73 22.27 0.22 -1.80 16 18 C -0.11 -2.98 5.75 -21.22 -0.12 -3.10 16 19 C -0.05 -0.89 9.88 22.51 0.22 -0.66 16 20 C -0.17 -2.41 10.03 22.16 0.22 -2.19 16 21 C 0.13 2.62 11.15 85.09 0.95 3.57 16 22 N -0.51 -16.43 10.34 -188.66 -1.95 -18.38 16 23 C 0.10 3.61 6.60 40.25 0.27 3.88 16 24 C -0.09 -3.85 7.51 22.87 0.17 -3.68 16 25 H 0.23 8.18 7.80 -4.42 -0.03 8.14 16 26 H 0.10 5.26 6.29 -2.39 -0.02 5.24 16 27 H 0.08 3.48 5.55 -2.39 -0.01 3.47 16 28 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.12 5.73 4.73 -2.91 -0.01 5.71 16 Total: -1.00 -77.18 298.51 5.64 -71.55 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.14 Total: 20.87 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.99 Total: -8.98 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -3.45 Total: -89.52 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.07 Total: -38.48 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -77.18 5.64 -71.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459386136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.926 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds