Wall clock time and date at job start Tue Mar 31 2020 01:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33817 * 122.44831 * 2 1 4 4 S 1.70620 * 110.95380 * 179.78431 * 3 2 1 5 5 C 1.75826 * 91.56337 * 0.30665 * 4 3 2 6 6 C 1.46582 * 125.45591 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99595 * 179.69883 * 6 5 4 8 8 N 1.34774 * 120.00447 * 359.69721 * 6 5 4 9 9 C 1.46502 * 120.00215 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.36943 * 119.99537 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99818 * 18 16 14 21 21 H 1.48504 * 109.47118 * 239.99827 * 18 16 14 22 22 C 1.36649 * 109.08477 * 359.70090 * 5 4 3 23 23 H 1.09000 * 109.47163 * 269.97448 * 1 2 3 24 24 H 1.08999 * 109.46699 * 29.97726 * 1 2 3 25 25 H 1.09006 * 109.46708 * 149.97384 * 1 2 3 26 26 H 1.08004 * 124.52455 * 0.02562 * 3 2 1 27 27 H 0.96997 * 119.99865 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 29 29 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 30 30 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 31 31 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 32 32 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 33 33 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 34 34 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 35 35 H 0.96995 * 120.00545 * 179.97438 * 17 16 14 36 36 H 1.07997 * 123.35216 * 180.24575 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7893 0.0060 5 6 3.5938 -0.9426 -0.0009 6 6 4.6232 -1.9861 -0.0004 7 8 4.3002 -3.1595 0.0000 8 7 5.9274 -1.6462 -0.0005 9 6 6.9563 -2.6891 0.0005 10 6 8.3205 -2.0488 0.0009 11 6 9.1913 -2.3631 0.9276 12 6 10.5578 -1.7276 0.9243 13 7 10.8048 -1.0941 2.2219 14 6 11.9899 -0.4484 2.4540 15 1 12.7422 -0.4059 1.6803 16 6 12.2242 0.1514 3.6837 17 7 11.3071 0.1001 4.6264 18 14 13.8405 1.0328 4.0001 19 1 14.6956 0.9486 2.7890 20 1 13.5728 2.4582 4.3196 21 1 14.5383 0.3918 5.1437 22 6 2.2447 -1.1601 -0.0006 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.8025 2.1232 0.0004 27 1 6.1848 -0.7110 -0.0012 28 1 6.8458 -3.3094 -0.8889 29 1 6.8455 -3.3079 0.8910 30 1 8.5818 -1.3342 -0.7657 31 1 8.9301 -3.0778 1.6940 32 1 11.3136 -2.4919 0.7433 33 1 10.6065 -0.9749 0.1374 34 1 10.1289 -1.1319 2.9167 35 1 11.4709 0.5189 5.4858 36 1 1.8020 -2.1451 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483005227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:59 Heat of formation + Delta-G solvation = 17.007708 kcal Electronic energy + Delta-G solvation = -17905.580586 eV Core-core repulsion = 14902.882141 eV Total energy + Delta-G solvation = -3002.698445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87671 -38.28134 -36.27903 -34.73616 -32.91171 -31.40221 -30.49747 -28.24201 -27.31054 -24.92619 -23.55777 -21.90365 -20.88629 -19.65793 -19.23721 -18.42340 -17.11444 -16.48299 -15.96264 -15.46563 -14.99968 -14.63928 -14.30608 -13.93536 -13.77670 -13.56442 -13.43329 -13.26171 -12.87422 -12.48528 -12.29096 -12.26585 -12.02854 -11.85305 -11.16792 -11.05544 -10.85399 -10.64712 -10.26608 -10.06007 -9.82948 -9.37567 -9.13619 -8.99767 -8.75638 -8.67031 -6.96808 -5.79786 -3.09542 0.26571 1.22332 1.63006 2.09005 2.23263 3.06213 3.25177 3.41503 3.47108 3.49444 4.56140 4.58105 4.65779 4.85153 4.96685 5.00356 5.22942 5.25175 5.28772 5.53110 5.54172 5.57748 5.63164 5.77691 5.96645 6.02746 6.10268 6.11210 6.23486 6.44704 6.54780 6.87168 7.11608 7.34330 7.66986 8.02031 8.38404 9.49801 10.05893 10.41149 11.42945 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.002834 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.389060 B = 9878.643802 C =10712.332799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.119 4.119 3 C -0.237 4.237 4 S 0.210 5.790 5 C -0.263 4.263 6 C 0.589 3.411 7 O -0.534 6.534 8 N -0.719 5.719 9 C 0.157 3.843 10 C -0.204 4.204 11 C -0.104 4.104 12 C 0.172 3.828 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.054 4.054 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.168 0.832 27 H 0.401 0.599 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 0.730 -11.855 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.374 4.374 4 S 0.479 5.521 5 C -0.384 4.384 6 C 0.375 3.625 7 O -0.412 6.412 8 N -0.370 5.370 9 C 0.034 3.966 10 C -0.223 4.223 11 C -0.123 4.123 12 C 0.045 3.955 13 N -0.374 5.374 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.088 4.088 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.186 0.814 27 H 0.235 0.765 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.190 0.868 -11.876 22.584 hybrid contribution -0.542 0.225 0.529 0.790 sum -19.732 1.093 -11.347 22.789 Atomic orbital electron populations 1.20512 0.89369 1.02856 1.02502 1.18788 0.97983 0.91504 1.04977 1.25176 0.98677 1.03418 1.10158 1.83195 1.03750 0.97936 1.67247 1.24638 0.98026 0.97399 1.18316 1.16949 0.81687 0.87381 0.76496 1.90825 1.81746 1.18216 1.50447 1.45940 1.05179 1.10837 1.75024 1.20370 0.84274 0.89397 1.02538 1.22682 0.94268 1.03718 1.01679 1.23352 0.96381 0.96818 0.95766 1.19834 0.90826 0.94508 0.90324 1.42309 1.19048 1.65042 1.11032 1.19288 0.93538 1.26663 0.97781 0.91005 1.24773 0.98321 1.01520 0.96384 1.69676 1.33862 1.49482 1.05020 0.86091 0.83030 0.79174 0.77731 1.20507 1.21805 1.21799 1.20650 0.90961 0.99976 0.97216 0.91084 0.91506 0.91274 0.81410 0.76452 0.90744 0.90872 0.86656 0.87182 0.95067 0.95624 0.78126 0.93486 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.13 36.01 0.36 -0.21 16 2 C -0.12 -1.05 5.78 -106.45 -0.62 -1.66 16 3 C -0.24 -1.95 10.67 29.18 0.31 -1.63 16 4 S 0.21 1.93 22.16 -107.50 -2.38 -0.45 16 5 C -0.26 -3.09 6.45 -36.79 -0.24 -3.33 16 6 C 0.59 8.24 7.78 -12.90 -0.10 8.14 16 7 O -0.53 -9.08 16.84 5.18 0.09 -8.99 16 8 N -0.72 -9.11 5.54 -62.83 -0.35 -9.45 16 9 C 0.16 2.03 6.11 -5.19 -0.03 2.00 16 10 C -0.20 -2.79 9.24 -36.02 -0.33 -3.12 16 11 C -0.10 -1.68 9.24 -36.02 -0.33 -2.01 16 12 C 0.17 3.42 6.70 -5.19 -0.03 3.39 16 13 N -0.73 -18.57 5.59 -61.08 -0.34 -18.91 16 14 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 18 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.05 -0.58 9.80 -40.43 -0.40 -0.98 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 25 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 26 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.40 4.49 7.58 -40.82 -0.31 4.18 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 30 H 0.12 1.48 7.84 -52.49 -0.41 1.07 16 31 H 0.11 1.75 7.84 -52.49 -0.41 1.33 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.51 7.79 -51.93 -0.40 0.10 16 34 H 0.39 10.32 7.66 -40.82 -0.31 10.01 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -32.75 330.89 -8.71 -41.46 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.76 Total: 8.40 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.65 Total: -6.84 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.03 Total: -55.86 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.75 -8.71 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483005227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.468 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds