Wall clock time and date at job start Tue Mar 31 2020 01:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33817 * 122.44831 * 2 1 4 4 S 1.70620 * 110.95380 * 179.78431 * 3 2 1 5 5 C 1.75826 * 91.56337 * 0.30665 * 4 3 2 6 6 C 1.46582 * 125.45591 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99595 * 179.69883 * 6 5 4 8 8 N 1.34774 * 120.00447 * 359.69721 * 6 5 4 9 9 C 1.46502 * 120.00215 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.36943 * 119.99537 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99818 * 18 16 14 21 21 H 1.48504 * 109.47118 * 239.99827 * 18 16 14 22 22 C 1.36649 * 109.08477 * 359.70090 * 5 4 3 23 23 H 1.09000 * 109.47163 * 269.97448 * 1 2 3 24 24 H 1.08999 * 109.46699 * 29.97726 * 1 2 3 25 25 H 1.09006 * 109.46708 * 149.97384 * 1 2 3 26 26 H 1.08004 * 124.52455 * 0.02562 * 3 2 1 27 27 H 0.96997 * 119.99865 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 29 29 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 30 30 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 31 31 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 32 32 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 33 33 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 34 34 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 35 35 H 0.96995 * 120.00545 * 179.97438 * 17 16 14 36 36 H 1.07997 * 123.35216 * 180.24575 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7893 0.0060 5 6 3.5938 -0.9426 -0.0009 6 6 4.6232 -1.9861 -0.0004 7 8 4.3002 -3.1595 0.0000 8 7 5.9274 -1.6462 -0.0005 9 6 6.9563 -2.6891 0.0005 10 6 8.3205 -2.0488 0.0009 11 6 9.1913 -2.3631 0.9276 12 6 10.5578 -1.7276 0.9243 13 7 10.8048 -1.0941 2.2219 14 6 11.9899 -0.4484 2.4540 15 1 12.7422 -0.4059 1.6803 16 6 12.2242 0.1514 3.6837 17 7 11.3071 0.1001 4.6264 18 14 13.8405 1.0328 4.0001 19 1 14.6956 0.9486 2.7890 20 1 13.5728 2.4582 4.3196 21 1 14.5383 0.3918 5.1437 22 6 2.2447 -1.1601 -0.0006 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.8025 2.1232 0.0004 27 1 6.1848 -0.7110 -0.0012 28 1 6.8458 -3.3094 -0.8889 29 1 6.8455 -3.3079 0.8910 30 1 8.5818 -1.3342 -0.7657 31 1 8.9301 -3.0778 1.6940 32 1 11.3136 -2.4919 0.7433 33 1 10.6065 -0.9749 0.1374 34 1 10.1289 -1.1319 2.9167 35 1 11.4709 0.5189 5.4858 36 1 1.8020 -2.1451 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483005227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:59 Heat of formation + Delta-G solvation = -4.626334 kcal Electronic energy + Delta-G solvation = -17906.518709 eV Core-core repulsion = 14902.882141 eV Total energy + Delta-G solvation = -3003.636568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91506 -39.05215 -37.67487 -36.27033 -34.48341 -32.65443 -31.83995 -29.08387 -28.48963 -26.36203 -24.89600 -23.46336 -21.89855 -20.86798 -19.97451 -19.44816 -19.04158 -17.42523 -16.96989 -16.73006 -16.52250 -15.92178 -15.45730 -15.18993 -15.07438 -14.80937 -14.60697 -14.27564 -14.07178 -13.53228 -13.38707 -13.15834 -12.94599 -12.85634 -12.79807 -12.75687 -12.16382 -12.00490 -11.88634 -11.78192 -11.39072 -11.04477 -10.50041 -10.11474 -9.83294 -9.37224 -9.01938 -7.96367 -5.26458 -0.53539 0.46446 0.91031 1.01416 1.31676 1.48417 1.49254 1.59547 2.07724 2.21641 2.56820 3.37615 3.64470 3.75717 4.05158 4.06932 4.18573 4.22489 4.37877 4.43499 4.62062 4.67316 4.68487 4.85747 4.89442 4.91448 4.99264 5.05439 5.18003 5.38501 5.46696 5.47785 5.62594 5.80550 6.25754 6.31935 6.97656 7.31772 8.05565 8.29483 9.27317 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.002834 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.389060 B = 9878.643802 C =10712.332799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.130 4.130 3 C -0.225 4.225 4 S 0.229 5.771 5 C -0.299 4.299 6 C 0.587 3.413 7 O -0.573 6.573 8 N -0.714 5.714 9 C 0.158 3.842 10 C -0.165 4.165 11 C -0.128 4.128 12 C 0.173 3.827 13 N -0.745 5.745 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.976 3.024 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.294 1.294 22 C -0.055 4.055 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.197 0.803 27 H 0.409 0.591 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.374 0.626 35 H 0.252 0.748 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 2.136 -13.063 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C -0.363 4.363 4 S 0.498 5.502 5 C -0.419 4.419 6 C 0.375 3.625 7 O -0.455 6.455 8 N -0.365 5.365 9 C 0.035 3.965 10 C -0.184 4.184 11 C -0.147 4.147 12 C 0.047 3.953 13 N -0.388 5.388 14 C -0.379 4.379 15 H 0.097 0.903 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.221 1.221 22 C -0.090 4.090 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.214 0.786 27 H 0.245 0.755 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.127 0.873 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.206 0.794 35 H 0.061 0.939 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.786 2.283 -13.133 23.857 hybrid contribution -0.451 -0.202 0.804 0.944 sum -20.237 2.080 -12.329 23.788 Atomic orbital electron populations 1.20575 0.87421 1.03899 1.03214 1.19018 0.99399 0.90844 1.05025 1.25587 0.98009 1.04601 1.08091 1.83087 1.04663 0.95697 1.66779 1.24526 0.97858 0.98485 1.21030 1.17266 0.82212 0.87406 0.75595 1.90792 1.82347 1.19905 1.52479 1.45860 1.04876 1.11158 1.74578 1.20325 0.83925 0.89526 1.02728 1.22756 0.93565 1.01858 1.00244 1.23031 0.95473 0.98587 0.97614 1.19921 0.92970 0.94422 0.87962 1.42547 1.18138 1.65294 1.12786 1.19709 0.94438 1.25848 0.97869 0.90318 1.25628 1.01806 1.03057 0.96418 1.69832 1.35901 1.50966 1.05332 0.85031 0.79168 0.77528 0.77762 1.18868 1.21867 1.22078 1.20856 0.90946 1.00742 0.96460 0.90472 0.89871 0.90913 0.78566 0.75520 0.89656 0.91736 0.85052 0.87316 0.95020 0.94772 0.79416 0.93939 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.13 71.24 0.72 -0.20 16 2 C -0.13 -2.05 5.78 -21.05 -0.12 -2.17 16 3 C -0.23 -3.12 10.67 66.81 0.71 -2.40 16 4 S 0.23 3.84 22.16 -56.49 -1.25 2.59 16 5 C -0.30 -6.89 6.45 24.08 0.16 -6.74 16 6 C 0.59 16.47 7.78 86.42 0.67 17.14 16 7 O -0.57 -19.92 16.84 -4.37 -0.07 -20.00 16 8 N -0.71 -17.59 5.54 -470.90 -2.61 -20.20 16 9 C 0.16 3.94 6.11 85.63 0.52 4.46 16 10 C -0.17 -4.25 9.24 25.65 0.24 -4.01 16 11 C -0.13 -4.05 9.24 25.65 0.24 -3.81 16 12 C 0.17 6.77 6.70 85.63 0.57 7.35 16 13 N -0.74 -38.02 5.59 -347.16 -1.94 -39.96 16 14 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 18 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 C -0.06 -1.15 9.80 21.72 0.21 -0.94 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 25 H 0.07 0.67 8.13 -2.38 -0.02 0.65 16 26 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 27 H 0.41 8.67 7.58 -92.71 -0.70 7.97 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.76 7.79 -2.39 -0.02 1.74 16 30 H 0.13 3.01 7.84 -2.91 -0.02 2.99 16 31 H 0.11 3.47 7.84 -2.91 -0.02 3.45 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 1.29 7.79 -2.38 -0.02 1.27 16 34 H 0.37 20.40 7.66 -92.71 -0.71 19.69 16 35 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -70.27 330.89 1.35 -68.92 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.31 Total: 28.19 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.23 Total: -8.21 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -4.27 Total: -119.34 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.25 Total: 2.59 kcal Total: -70.27 1.35 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483005227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.293 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds