Wall clock time and date at job start Tue Mar 31 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38199 * 119.61502 * 2 1 4 4 C 1.38652 * 119.15838 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.78988 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47064 * 89.99881 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47248 * 120.00156 * 15 13 11 18 18 H 1.48501 * 109.47068 * 240.00173 * 15 13 11 19 19 C 1.38650 * 118.42161 * 0.25447 * 4 3 2 20 20 C 1.38207 * 119.16129 * 359.51767 * 19 4 3 21 21 C 1.50701 * 119.61649 * 180.21050 * 20 19 4 22 22 N 1.31868 * 120.76474 * 0.49389 * 20 19 4 23 23 H 1.08999 * 109.47044 * 90.00042 * 1 2 3 24 24 H 1.09000 * 109.47423 * 210.00183 * 1 2 3 25 25 H 1.09001 * 109.47330 * 330.00435 * 1 2 3 26 26 H 1.07991 * 120.42226 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 329.99964 * 5 4 3 28 28 H 1.09001 * 109.46980 * 210.00064 * 5 4 3 29 29 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 30 30 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 31 31 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 32 32 H 0.96999 * 120.00126 * 180.02562 * 14 13 11 33 33 H 1.07998 * 120.42060 * 179.73371 * 19 4 3 34 34 H 1.09004 * 109.46782 * 270.27608 * 21 20 19 35 35 H 1.08994 * 109.47267 * 30.27983 * 21 20 19 36 36 H 1.09003 * 109.46747 * 150.28200 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2015 0.0000 4 6 3.5764 1.1904 0.0005 5 6 4.3582 2.4788 0.0000 6 7 4.6109 2.8973 1.3811 7 6 5.2986 4.0300 1.6268 8 8 5.7078 4.7032 0.7047 9 6 5.5581 4.4607 3.0474 10 16 6.4971 6.0081 3.0468 11 6 6.6552 6.2709 4.7819 12 1 6.2253 5.5643 5.4764 13 6 7.3311 7.3865 5.2561 14 7 7.8537 8.2485 4.4097 15 14 7.4981 7.6654 7.0956 16 1 6.8266 6.5609 7.8267 17 1 8.9365 7.7000 7.4625 18 1 6.8631 8.9574 7.4600 19 6 4.2266 -0.0342 -0.0044 20 6 3.4765 -1.1950 0.0006 21 6 4.1726 -2.5316 0.0002 22 7 2.1587 -1.1465 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6506 2.1370 0.0004 27 1 3.7859 3.2508 -0.5146 28 1 5.3077 2.3274 -0.5134 29 1 4.2839 2.3586 2.1185 30 1 4.6083 4.6127 3.5603 31 1 6.1297 3.6886 3.5625 32 1 8.3265 9.0279 4.7411 33 1 5.3056 -0.0805 -0.0084 34 1 4.3408 -2.8533 -1.0277 35 1 5.1295 -2.4430 0.5144 36 1 3.5508 -3.2652 0.5133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584184639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:23 Heat of formation + Delta-G solvation = -18.143891 kcal Electronic energy + Delta-G solvation = -18175.254604 eV Core-core repulsion = 15171.031871 eV Total energy + Delta-G solvation = -3004.222733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76790 -39.12029 -35.43300 -34.02428 -32.65730 -32.44315 -29.55435 -29.37255 -27.09291 -26.29484 -25.42924 -22.17903 -21.19297 -20.46674 -17.91006 -17.03842 -16.60993 -16.30906 -15.85643 -15.09894 -15.02531 -14.83533 -14.81452 -13.95389 -13.58415 -13.48972 -13.29995 -13.22497 -13.00672 -12.64407 -12.41314 -12.39021 -12.17738 -12.00190 -11.65738 -11.08263 -11.03830 -10.78162 -10.13611 -9.82966 -9.75971 -9.38460 -9.10190 -9.06655 -8.98100 -8.25834 -6.52284 -6.23550 -3.94299 0.80752 0.84882 3.00023 3.03140 3.20549 3.26057 3.30345 3.43979 3.79083 3.88305 4.18327 4.20167 4.33454 4.78252 4.78808 5.04320 5.11663 5.13571 5.15616 5.18648 5.23184 5.24251 5.31148 5.45607 5.49262 5.65751 5.73002 5.76587 5.85049 5.85374 6.05354 6.11050 6.41930 6.48790 7.58179 7.61906 7.71964 8.33789 8.53227 9.22003 10.83951 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002844 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.520786 B = 9842.611086 C = 9880.836234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.161 4.161 4 C -0.050 4.050 5 C 0.161 3.839 6 N -0.735 5.735 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.161 4.161 20 C 0.130 3.870 21 C -0.104 4.104 22 N -0.484 5.484 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.399 0.601 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.268 0.732 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -19.341 -8.142 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.008 4.008 3 C -0.182 4.182 4 C -0.059 4.059 5 C 0.037 3.963 6 N -0.390 5.390 7 C 0.319 3.681 8 O -0.389 6.389 9 C -0.303 4.303 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.182 4.182 20 C -0.007 4.007 21 C -0.161 4.161 22 N -0.196 5.196 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.233 0.767 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.397 -18.802 -9.722 24.040 hybrid contribution -0.012 -0.017 2.548 2.548 sum -11.409 -18.819 -7.174 23.146 Atomic orbital electron populations 1.20722 0.88643 1.03605 1.03157 1.21279 0.97038 0.88033 0.94400 1.21929 0.94093 0.99600 1.02549 1.20356 0.93917 0.95138 0.96460 1.20137 0.99342 0.91873 0.84914 1.46018 1.59118 1.26448 1.07422 1.20350 0.76708 0.79565 0.91444 1.90711 1.49392 1.52839 1.46008 1.23532 1.05552 1.06415 0.94849 1.85401 1.68365 1.19653 1.09914 1.22907 1.41714 1.12240 0.91475 0.90857 1.24999 0.94668 0.94896 0.99062 1.70027 1.34047 1.11899 1.34305 0.86105 0.78046 0.78279 0.82994 1.19610 1.20551 1.20558 1.21932 1.01552 0.92142 1.02549 1.21280 0.89333 0.95738 0.94397 1.20723 0.99793 0.92455 1.03155 1.67348 1.09456 1.29555 1.13196 0.90347 0.90445 0.90515 0.84494 0.90240 0.90243 0.76681 0.89143 0.89145 0.92215 0.84495 0.90345 0.90514 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.36 16 2 C 0.13 1.28 6.78 -82.59 -0.56 0.72 16 3 C -0.16 -1.54 9.45 -39.44 -0.37 -1.91 16 4 C -0.05 -0.51 5.29 -104.32 -0.55 -1.06 16 5 C 0.16 1.87 5.85 -5.19 -0.03 1.84 16 6 N -0.73 -9.73 5.55 -61.47 -0.34 -10.08 16 7 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.52 -11.51 15.86 5.56 0.09 -11.42 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 15 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.16 -1.54 9.45 -39.44 -0.37 -1.91 16 20 C 0.13 1.28 6.78 -82.59 -0.56 0.72 16 21 C -0.10 -0.72 10.17 36.01 0.37 -0.36 16 22 N -0.48 -5.31 10.19 -5.74 -0.06 -5.37 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.40 4.39 8.46 -40.82 -0.35 4.04 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -34.66 331.10 -8.16 -42.81 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.95 Total: 0.30 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.38 Total: -8.37 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.33 Total: -40.79 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.66 -8.16 -42.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584184639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.670 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds