Wall clock time and date at job start Tue Mar 31 2020 01:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38199 * 119.61502 * 2 1 4 4 C 1.38652 * 119.15838 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.78988 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47064 * 89.99881 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47248 * 120.00156 * 15 13 11 18 18 H 1.48501 * 109.47068 * 240.00173 * 15 13 11 19 19 C 1.38650 * 118.42161 * 0.25447 * 4 3 2 20 20 C 1.38207 * 119.16129 * 359.51767 * 19 4 3 21 21 C 1.50701 * 119.61649 * 180.21050 * 20 19 4 22 22 N 1.31868 * 120.76474 * 0.49389 * 20 19 4 23 23 H 1.08999 * 109.47044 * 90.00042 * 1 2 3 24 24 H 1.09000 * 109.47423 * 210.00183 * 1 2 3 25 25 H 1.09001 * 109.47330 * 330.00435 * 1 2 3 26 26 H 1.07991 * 120.42226 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 329.99964 * 5 4 3 28 28 H 1.09001 * 109.46980 * 210.00064 * 5 4 3 29 29 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 30 30 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 31 31 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 32 32 H 0.96999 * 120.00126 * 180.02562 * 14 13 11 33 33 H 1.07998 * 120.42060 * 179.73371 * 19 4 3 34 34 H 1.09004 * 109.46782 * 270.27608 * 21 20 19 35 35 H 1.08994 * 109.47267 * 30.27983 * 21 20 19 36 36 H 1.09003 * 109.46747 * 150.28200 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2015 0.0000 4 6 3.5764 1.1904 0.0005 5 6 4.3582 2.4788 0.0000 6 7 4.6109 2.8973 1.3811 7 6 5.2986 4.0300 1.6268 8 8 5.7078 4.7032 0.7047 9 6 5.5581 4.4607 3.0474 10 16 6.4971 6.0081 3.0468 11 6 6.6552 6.2709 4.7819 12 1 6.2253 5.5643 5.4764 13 6 7.3311 7.3865 5.2561 14 7 7.8537 8.2485 4.4097 15 14 7.4981 7.6654 7.0956 16 1 6.8266 6.5609 7.8267 17 1 8.9365 7.7000 7.4625 18 1 6.8631 8.9574 7.4600 19 6 4.2266 -0.0342 -0.0044 20 6 3.4765 -1.1950 0.0006 21 6 4.1726 -2.5316 0.0002 22 7 2.1587 -1.1465 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6506 2.1370 0.0004 27 1 3.7859 3.2508 -0.5146 28 1 5.3077 2.3274 -0.5134 29 1 4.2839 2.3586 2.1185 30 1 4.6083 4.6127 3.5603 31 1 6.1297 3.6886 3.5625 32 1 8.3265 9.0279 4.7411 33 1 5.3056 -0.0805 -0.0084 34 1 4.3408 -2.8533 -1.0277 35 1 5.1295 -2.4430 0.5144 36 1 3.5508 -3.2652 0.5133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584184639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:22 Heat of formation + Delta-G solvation = -41.732080 kcal Electronic energy + Delta-G solvation = -18176.277465 eV Core-core repulsion = 15171.031871 eV Total energy + Delta-G solvation = -3005.245593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54398 -40.50578 -36.54898 -34.66373 -34.58904 -33.72466 -31.00069 -29.97109 -27.79941 -27.73237 -27.15154 -22.85006 -22.03338 -21.85819 -19.85892 -17.92959 -17.81196 -17.52675 -16.88736 -16.80757 -16.49572 -15.91657 -15.69022 -15.52069 -14.73530 -14.46726 -14.44922 -14.11514 -14.03785 -13.77816 -13.39491 -13.16486 -13.10241 -12.92661 -12.90840 -12.79535 -12.59827 -12.50548 -11.72444 -11.23684 -11.16126 -10.62451 -10.49850 -10.28055 -10.23301 -9.74178 -8.67097 -8.35235 -6.13189 0.06076 0.09805 1.27463 1.41533 1.47460 1.56443 1.58583 2.24246 2.27914 2.76575 2.99155 3.26011 3.31543 3.36751 3.64085 3.93642 4.09539 4.10601 4.25488 4.34001 4.45581 4.50086 4.58289 4.62250 4.64763 4.74986 4.80853 4.82707 5.10245 5.19971 5.22919 5.28043 5.28373 5.42113 5.74621 6.19826 6.40450 7.00356 7.06420 7.16114 8.74214 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002844 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.520786 B = 9842.611086 C = 9880.836234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.165 4.165 4 C -0.054 4.054 5 C 0.165 3.835 6 N -0.709 5.709 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.130 4.130 10 S -0.149 6.149 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.165 4.165 20 C 0.119 3.881 21 C -0.102 4.102 22 N -0.505 5.505 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.414 0.586 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.271 0.729 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 -20.965 -6.940 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.185 4.185 4 C -0.062 4.062 5 C 0.042 3.958 6 N -0.363 5.363 7 C 0.324 3.676 8 O -0.439 6.439 9 C -0.281 4.281 10 S 0.078 5.922 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.185 4.185 20 C -0.018 4.018 21 C -0.159 4.159 22 N -0.217 5.217 23 H 0.106 0.894 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.168 0.832 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.251 0.749 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.417 -20.484 -8.516 25.423 hybrid contribution 0.215 0.357 2.086 2.128 sum -12.202 -20.127 -6.429 24.399 Atomic orbital electron populations 1.20790 0.86898 1.04281 1.03971 1.21726 0.98360 0.87826 0.93906 1.22095 0.93965 1.00204 1.02220 1.20202 0.94069 0.94421 0.97548 1.20164 0.99566 0.92661 0.83443 1.45739 1.56975 1.24616 1.08998 1.20040 0.77003 0.80468 0.90138 1.90704 1.51697 1.54671 1.46865 1.23372 1.05347 1.02685 0.96709 1.85565 1.70595 1.25151 1.10875 1.23236 1.41824 1.12720 0.91579 0.89927 1.26126 0.94012 0.94438 1.04598 1.70185 1.35032 1.12628 1.36918 0.84899 0.78267 0.78581 0.76160 1.18057 1.19930 1.19949 1.22098 1.02286 0.91885 1.02218 1.21728 0.89248 0.96937 0.93902 1.20790 1.00149 0.91027 1.03971 1.67418 1.10154 1.30262 1.13871 0.89388 0.90561 0.89038 0.83214 0.90406 0.90407 0.74947 0.87170 0.87166 0.91974 0.83211 0.89383 0.89038 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.17 71.24 0.72 -0.51 16 2 C 0.12 2.14 6.78 42.54 0.29 2.43 16 3 C -0.16 -2.84 9.45 22.36 0.21 -2.63 16 4 C -0.05 -0.99 5.29 -19.67 -0.10 -1.10 16 5 C 0.16 3.59 5.85 85.63 0.50 4.09 16 6 N -0.71 -17.46 5.55 -466.78 -2.59 -20.05 16 7 C 0.54 19.24 7.85 87.66 0.69 19.93 16 8 O -0.56 -25.30 15.86 -3.03 -0.05 -25.35 16 9 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 10 S -0.15 -8.19 20.57 -56.49 -1.16 -9.35 16 11 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 12 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.74 5.49 84.86 0.47 1.20 16 14 N -0.91 -55.68 13.22 21.65 0.29 -55.40 16 15 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C -0.16 -2.84 9.45 22.36 0.21 -2.63 16 20 C 0.12 2.14 6.78 42.55 0.29 2.43 16 21 C -0.10 -1.23 10.17 71.24 0.72 -0.51 16 22 N -0.51 -10.38 10.19 -172.08 -1.75 -12.13 16 23 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 26 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 28 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 29 H 0.41 7.98 8.46 -92.71 -0.78 7.20 16 30 H 0.11 3.84 8.14 -2.40 -0.02 3.83 16 31 H 0.11 3.84 8.14 -2.39 -0.02 3.83 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.01 331.10 2.15 -73.87 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.30 Total: 15.24 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 5.08 Total: -12.19 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -4.06 Total: -87.58 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -76.01 2.15 -73.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584184639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.135 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds