Wall clock time and date at job start Tue Mar 31 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31973 * 118.87288 * 2 1 4 4 C 1.32206 * 121.19355 * 180.02562 * 3 2 1 5 5 C 1.39817 * 118.99394 * 359.97438 * 4 3 2 6 6 C 1.47342 * 121.00320 * 180.02562 * 5 4 3 7 7 O 1.21639 * 119.99835 * 234.92142 * 6 5 4 8 8 N 1.34767 * 119.99943 * 54.91462 * 6 5 4 9 9 C 1.36906 * 120.00111 * 185.70933 * 8 6 5 10 10 H 1.07997 * 120.00080 * 5.44291 * 9 8 6 11 11 C 1.39026 * 120.00005 * 185.43770 * 9 8 6 12 12 N 1.31380 * 119.99881 * 34.62862 * 11 9 8 13 13 Si 1.86802 * 120.00119 * 214.62241 * 11 9 8 14 14 H 1.48498 * 109.46711 * 95.00331 * 13 11 9 15 15 H 1.48493 * 109.47286 * 215.00214 * 13 11 9 16 16 H 1.48501 * 109.46988 * 335.00759 * 13 11 9 17 17 C 1.46502 * 120.00073 * 5.71508 * 8 6 5 18 18 C 1.50697 * 109.47295 * 84.81577 * 17 8 6 19 19 O 1.20826 * 119.99989 * 359.97438 * 18 17 8 20 20 O 1.34229 * 119.99940 * 180.02562 * 18 17 8 21 21 C 1.41103 * 118.00320 * 0.02562 * 5 4 3 22 22 N 1.37879 * 120.64506 * 180.02562 * 21 5 4 23 23 N 1.31685 * 118.87890 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46596 * 269.97724 * 1 2 3 25 25 H 1.09002 * 109.46981 * 29.97410 * 1 2 3 26 26 H 1.08996 * 109.46865 * 149.97626 * 1 2 3 27 27 H 1.08000 * 120.50139 * 179.97438 * 4 3 2 28 28 H 0.96996 * 120.00137 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.47468 * 204.81763 * 17 8 6 30 30 H 1.08999 * 109.47173 * 324.81434 * 17 8 6 31 31 H 0.96700 * 117.00101 * 180.02562 * 20 18 17 32 32 H 0.97003 * 119.99966 * 185.00192 * 22 21 5 33 33 H 0.97001 * 119.99978 * 5.01848 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1443 1.1557 0.0000 4 6 3.4653 1.2092 -0.0005 5 6 4.1920 0.0147 -0.0005 6 6 5.6653 0.0227 -0.0005 7 8 6.2768 -0.5794 -0.8626 8 7 6.3355 0.6972 0.9546 9 6 7.6989 0.8029 0.8892 10 1 8.2294 0.4227 0.0288 11 6 8.4006 1.3997 1.9305 12 7 7.9868 1.2555 3.1691 13 14 9.9319 2.4066 1.5686 14 1 9.5668 3.8421 1.4634 15 1 10.9147 2.2250 2.6669 16 1 10.5312 1.9530 0.2879 17 6 5.6051 1.3173 2.0628 18 6 5.3724 0.2953 3.1455 19 8 5.7750 -0.8353 3.0055 20 8 4.7171 0.6406 4.2648 21 6 3.4719 -1.1988 -0.0005 22 7 4.1335 -2.4085 0.0000 23 7 2.1430 -1.1531 -0.0005 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9753 2.1612 -0.0009 28 1 8.4765 1.6716 3.8956 29 1 6.1888 2.1456 2.4645 30 1 4.6461 1.6898 1.7027 31 1 4.5923 -0.0491 4.9311 32 1 3.6320 -3.2356 -0.0732 33 1 5.1004 -2.4325 0.0739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607976383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:00 Heat of formation + Delta-G solvation = -58.828068 kcal Electronic energy + Delta-G solvation = -22657.127540 eV Core-core repulsion = 19104.847395 eV Total energy + Delta-G solvation = -3552.280146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78364 -39.40787 -38.11600 -35.67092 -35.17873 -34.56641 -33.17341 -31.89058 -30.74739 -28.57536 -27.81947 -25.05177 -23.60239 -22.60893 -21.29304 -19.71243 -18.02811 -17.41816 -17.09946 -16.99926 -16.56862 -15.68725 -15.28429 -15.08514 -14.91402 -14.60368 -14.21992 -14.04386 -13.16509 -13.12500 -12.90933 -12.67239 -12.29016 -12.08790 -11.86593 -11.80707 -11.34216 -11.07607 -10.95577 -10.59588 -10.51874 -10.41604 -9.86090 -9.52263 -9.12749 -8.93395 -8.69889 -8.20093 -7.92084 -6.72284 -3.95279 1.16234 1.71247 3.01110 3.17179 3.22855 3.24993 3.41213 3.65406 3.85924 4.05607 4.19920 4.35311 4.60046 4.64531 4.83879 5.21314 5.41308 5.58009 5.62565 5.64517 5.74734 5.92702 6.04826 6.25571 6.36956 6.64663 7.09111 7.31570 7.36051 7.52081 7.75520 7.96651 8.17908 8.57950 8.82054 8.89043 9.11148 9.66044 10.35986 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.006502 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.675939 B = 4305.532782 C = 4623.416473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.352 3.648 3 N -0.563 5.563 4 C 0.189 3.811 5 C -0.275 4.275 6 C 0.497 3.503 7 O -0.575 6.575 8 N -0.411 5.411 9 C -0.316 4.316 10 H 0.117 0.883 11 C 0.037 3.963 12 N -0.854 5.854 13 Si 0.920 3.080 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.130 3.870 18 C 0.486 3.514 19 O -0.503 6.503 20 O -0.530 6.530 21 C 0.474 3.526 22 N -0.815 5.815 23 N -0.584 5.584 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.169 0.831 28 H 0.275 0.725 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.402 0.598 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 0.788 0.214 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 N -0.282 5.282 4 C 0.026 3.974 5 C -0.289 4.289 6 C 0.286 3.714 7 O -0.460 6.460 8 N -0.128 5.128 9 C -0.442 4.442 10 H 0.135 0.865 11 C -0.169 4.169 12 N -0.490 5.490 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.190 1.190 17 C 0.003 3.997 18 C 0.326 3.674 19 O -0.388 6.388 20 O -0.341 6.341 21 C 0.226 3.774 22 N -0.357 5.357 23 N -0.311 5.311 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.186 0.814 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.231 0.769 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.509 0.530 -0.357 10.528 hybrid contribution 1.929 -0.420 0.772 2.120 sum -8.580 0.111 0.415 8.590 Atomic orbital electron populations 1.20509 0.86166 1.03698 1.03528 1.22885 0.97507 0.82887 0.88416 1.68183 1.09605 1.29273 1.21183 1.23141 0.89098 0.97204 0.87975 1.21240 0.97186 0.94428 1.16011 1.17222 0.84764 0.83402 0.85989 1.90638 1.68788 1.46222 1.40317 1.43510 1.06806 1.44650 1.17807 1.19795 0.80736 1.37829 1.05879 0.86545 1.25265 0.99890 0.98017 0.93733 1.70106 1.42048 1.38217 0.98673 0.86009 0.80440 0.80202 0.78805 1.19957 1.21059 1.18964 1.21063 0.97767 0.95087 0.85751 1.23887 0.72553 0.89213 0.81711 1.90607 1.46477 1.22618 1.79135 1.84526 1.72102 1.47487 1.30023 1.18295 0.87635 0.86420 0.85059 1.42172 1.11130 1.04379 1.78060 1.67766 1.07164 1.31071 1.25090 0.89900 0.89728 0.90076 0.81394 0.91506 0.84865 0.89799 0.74954 0.76851 0.74272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.31 36.01 0.37 -0.53 16 2 C 0.35 5.71 7.64 -157.13 -1.20 4.51 16 3 N -0.56 -9.60 10.30 -10.43 -0.11 -9.71 16 4 C 0.19 3.40 8.93 -16.80 -0.15 3.25 16 5 C -0.27 -5.64 4.99 -104.52 -0.52 -6.16 16 6 C 0.50 11.87 6.24 -12.56 -0.08 11.80 16 7 O -0.58 -15.29 15.75 5.24 0.08 -15.21 16 8 N -0.41 -9.94 2.16 -117.35 -0.25 -10.19 16 9 C -0.32 -8.26 9.35 -14.99 -0.14 -8.40 16 10 H 0.12 3.22 7.39 -52.49 -0.39 2.83 16 11 C 0.04 0.91 4.65 -17.45 -0.08 0.83 16 12 N -0.85 -21.27 10.05 55.50 0.56 -20.71 16 13 Si 0.92 19.17 29.67 -169.99 -5.04 14.13 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 C 0.13 2.78 5.00 -5.19 -0.03 2.76 16 18 C 0.49 10.75 6.91 36.00 0.25 10.99 16 19 O -0.50 -12.73 17.07 -18.75 -0.32 -13.05 16 20 O -0.53 -9.64 13.42 -39.25 -0.53 -10.17 16 21 C 0.47 9.20 7.83 -154.86 -1.21 7.99 16 22 N -0.82 -14.36 8.92 31.41 0.28 -14.08 16 23 N -0.58 -10.36 10.35 -9.73 -0.10 -10.46 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.17 2.65 7.40 -52.49 -0.39 2.26 16 28 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 29 H 0.13 2.92 6.03 -51.93 -0.31 2.60 16 30 H 0.08 1.56 4.57 -51.93 -0.24 1.32 16 31 H 0.39 5.49 9.10 45.56 0.41 5.91 16 32 H 0.40 5.73 8.95 -40.82 -0.37 5.37 16 33 H 0.42 8.26 7.16 -40.82 -0.29 7.97 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -32.53 294.20 -5.76 -38.30 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -1.97 Total: 19.68 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: -2.79 Total: 27.04 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.38 Total: -65.14 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.76 Total: -38.43 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.04 Total: 14.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.53 -5.76 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607976383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.532 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds