Wall clock time and date at job start Tue Mar 31 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99943 * 2 1 4 4 N 1.46501 * 109.47147 * 124.99848 * 3 2 1 5 5 C 1.34834 * 126.58973 * 124.70779 * 4 3 2 6 6 C 1.36660 * 106.82461 * 180.26222 * 5 4 3 7 7 C 1.47441 * 125.77849 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00284 * 353.65744 * 7 6 5 9 9 N 1.34784 * 119.99775 * 173.65473 * 7 6 5 10 10 C 1.36957 * 119.99425 * 184.68482 * 9 7 6 11 11 H 1.07996 * 120.00429 * 319.26043 * 10 9 7 12 12 C 1.38992 * 119.99549 * 139.26675 * 10 9 7 13 13 N 1.31403 * 119.99981 * 165.09787 * 12 10 9 14 14 Si 1.86794 * 120.00198 * 345.09898 * 12 10 9 15 15 H 1.48508 * 109.47222 * 90.74383 * 14 12 10 16 16 H 1.48501 * 109.47268 * 210.74486 * 14 12 10 17 17 H 1.48499 * 109.47032 * 330.74312 * 14 12 10 18 18 C 1.46498 * 120.00317 * 4.69034 * 9 7 6 19 19 C 1.50699 * 109.47206 * 84.64768 * 18 9 7 20 20 O 1.20825 * 120.00209 * 0.02562 * 19 18 9 21 21 O 1.34232 * 119.99668 * 179.97438 * 19 18 9 22 22 N 1.34425 * 108.44505 * 0.02562 * 6 5 4 23 23 N 1.28758 * 109.52842 * 359.97438 * 22 6 5 24 24 H 1.08003 * 120.00019 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00063 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00374 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46925 * 4.99773 * 3 2 1 28 28 H 1.09001 * 109.46738 * 244.99903 * 3 2 1 29 29 H 1.07995 * 126.58763 * 0.23483 * 5 4 3 30 30 H 0.97001 * 120.00090 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47062 * 204.64870 * 18 9 7 32 32 H 1.09003 * 109.47066 * 324.65040 * 18 9 7 33 33 H 0.96702 * 116.99335 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3239 1.5444 1.0734 6 6 4.7915 1.4777 2.3558 7 6 6.1955 1.6507 2.7715 8 8 7.0692 1.7592 1.9325 9 7 6.5106 1.6886 4.0815 10 6 7.7990 1.9449 4.4686 11 1 8.6232 1.5018 3.9295 12 6 8.0459 2.7754 5.5555 13 7 9.2368 2.7947 6.1104 14 14 6.6847 3.8640 6.2273 15 1 5.9460 3.1344 7.2892 16 1 7.2760 5.1015 6.7966 17 1 5.7498 4.2214 5.1303 18 6 5.4750 1.4554 5.0911 19 6 5.3143 -0.0264 5.3130 20 8 5.9953 -0.8077 4.6919 21 8 4.4153 -0.4784 6.2014 22 7 3.7547 1.2276 3.1740 23 7 2.6728 1.1353 2.4820 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 4.9078 1.7310 0.1843 30 1 9.4092 3.3745 6.8687 31 1 5.7654 1.9335 6.0266 32 1 4.5302 1.8757 4.7463 33 1 4.3486 -1.4370 6.3095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609485593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:39 Heat of formation + Delta-G solvation = 29.939916 kcal Electronic energy + Delta-G solvation = -22069.870675 eV Core-core repulsion = 18521.439798 eV Total energy + Delta-G solvation = -3548.430877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94476 -39.67558 -38.23604 -36.08483 -35.54497 -34.76900 -32.87037 -32.08954 -30.46636 -27.96690 -27.30265 -25.32787 -22.59618 -22.16114 -21.51242 -20.51730 -19.44254 -17.59085 -17.38645 -17.14972 -16.21328 -15.98974 -15.64316 -15.40835 -15.34179 -14.75427 -14.39785 -14.11347 -13.81464 -13.39058 -12.82831 -12.67518 -12.44168 -12.31393 -12.22192 -11.87808 -11.64963 -11.01029 -10.91588 -10.89895 -10.40981 -10.14933 -9.98831 -9.94324 -9.84086 -9.20851 -8.90216 -8.83637 -7.87649 -6.41766 -4.06964 1.34702 1.56953 2.16453 2.43146 2.96066 3.02720 3.21434 3.23506 3.51869 4.06717 4.09648 4.20893 4.34224 4.45172 4.58262 4.68728 4.94284 5.06057 5.17548 5.34594 5.42917 5.51571 5.73018 5.80284 6.02189 6.10731 6.17082 6.34993 6.53366 7.09936 7.46072 8.14878 8.23602 8.41251 8.60147 8.83989 9.20689 9.60955 10.69123 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.005779 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.684583 B = 4844.177768 C = 5225.274383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.176 4.176 3 C 0.153 3.847 4 N -0.364 5.364 5 C 0.076 3.924 6 C -0.073 4.073 7 C 0.558 3.442 8 O -0.548 6.548 9 N -0.433 5.433 10 C -0.311 4.311 11 H 0.112 0.888 12 C 0.061 3.939 13 N -0.859 5.859 14 Si 0.868 3.132 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.258 1.258 18 C 0.087 3.913 19 C 0.474 3.526 20 O -0.504 6.504 21 O -0.522 6.522 22 N -0.223 5.223 23 N -0.070 5.070 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.203 0.797 30 H 0.277 0.723 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 -2.151 -8.614 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.195 4.195 3 C 0.033 3.967 4 N -0.151 5.151 5 C -0.079 4.079 6 C -0.213 4.213 7 C 0.345 3.655 8 O -0.427 6.427 9 N -0.154 5.154 10 C -0.439 4.439 11 H 0.130 0.870 12 C -0.146 4.146 13 N -0.495 5.495 14 Si 0.695 3.305 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.182 1.182 18 C -0.038 4.038 19 C 0.314 3.686 20 O -0.390 6.390 21 O -0.333 6.333 22 N -0.097 5.097 23 N -0.050 5.050 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -17.872 -2.065 -8.159 19.754 hybrid contribution 0.010 -0.023 -0.159 0.161 sum -17.862 -2.088 -8.318 19.814 Atomic orbital electron populations 1.23947 0.95452 1.02645 0.97134 1.22916 0.96356 0.97619 1.02631 1.21018 0.91943 0.97827 0.85962 1.50421 1.06641 1.49157 1.08851 1.23325 0.84169 0.99653 1.00729 1.22105 0.96187 1.12680 0.90291 1.16739 0.84124 0.81393 0.83282 1.90676 1.47886 1.53637 1.50509 1.43106 1.08614 1.61101 1.02537 1.19117 0.81419 1.28042 1.15277 0.87045 1.25419 0.96620 0.96255 0.96275 1.69673 1.21629 1.36844 1.21305 0.87103 0.82408 0.81120 0.79878 1.19387 1.20681 1.18177 1.21938 0.96487 0.89023 0.96401 1.24230 0.75502 0.93384 0.75440 1.90673 1.43770 1.58007 1.46596 1.84570 1.58436 1.30711 1.59561 1.74637 0.96845 1.11618 1.26579 1.81895 1.17720 1.21973 0.83374 0.87554 0.87978 0.86500 0.88294 0.87012 0.78042 0.91269 0.87602 0.84917 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 14.32 29.02 0.42 -0.59 16 2 C -0.18 -1.41 9.72 -36.02 -0.35 -1.76 16 3 C 0.15 1.22 6.98 -5.19 -0.04 1.18 16 4 N -0.36 -4.84 3.68 -62.22 -0.23 -5.07 16 5 C 0.08 1.17 11.28 -16.80 -0.19 0.98 16 6 C -0.07 -1.49 6.70 -83.55 -0.56 -2.05 16 7 C 0.56 13.91 7.43 -12.51 -0.09 13.82 16 8 O -0.55 -14.85 16.76 5.26 0.09 -14.77 16 9 N -0.43 -11.28 1.70 -117.31 -0.20 -11.48 16 10 C -0.31 -9.07 9.38 -14.98 -0.14 -9.21 16 11 H 0.11 3.63 7.93 -52.49 -0.42 3.21 16 12 C 0.06 1.70 5.38 -17.46 -0.09 1.61 16 13 N -0.86 -24.92 13.96 55.50 0.77 -24.14 16 14 Si 0.87 20.29 24.85 -169.99 -4.22 16.07 16 15 H -0.27 -5.81 6.58 56.52 0.37 -5.44 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 18 C 0.09 2.00 4.12 -5.20 -0.02 1.97 16 19 C 0.47 10.40 7.58 36.01 0.27 10.67 16 20 O -0.50 -12.61 17.07 -18.75 -0.32 -12.93 16 21 O -0.52 -9.04 13.42 -39.26 -0.53 -9.56 16 22 N -0.22 -4.36 8.16 32.84 0.27 -4.10 16 23 N -0.07 -1.18 13.63 60.35 0.82 -0.36 16 24 H 0.11 0.60 8.06 -52.48 -0.42 0.17 16 25 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 26 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.10 0.63 7.79 -51.93 -0.40 0.23 16 28 H 0.11 0.56 8.08 -51.93 -0.42 0.15 16 29 H 0.20 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.11 2.43 3.30 -51.93 -0.17 2.26 16 32 H 0.13 2.82 5.16 -51.93 -0.27 2.55 16 33 H 0.40 4.92 9.10 45.56 0.41 5.34 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -36.59 298.60 -1.95 -38.55 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.11 Total: 6.67 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: -0.80 Total: 16.63 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 1.44 Total: -45.15 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.76 Total: -37.26 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.22 Total: 16.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.59 -1.95 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609485593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.486 kcal (2) G-P(sol) polarization free energy of solvation -36.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds