Wall clock time and date at job start Tue Mar 31 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99943 * 2 1 4 4 N 1.46501 * 109.47147 * 124.99848 * 3 2 1 5 5 C 1.34834 * 126.58973 * 124.70779 * 4 3 2 6 6 C 1.36660 * 106.82461 * 180.26222 * 5 4 3 7 7 C 1.47441 * 125.77849 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00284 * 353.65744 * 7 6 5 9 9 N 1.34784 * 119.99775 * 173.65473 * 7 6 5 10 10 C 1.36957 * 119.99425 * 184.68482 * 9 7 6 11 11 H 1.07996 * 120.00429 * 319.26043 * 10 9 7 12 12 C 1.38992 * 119.99549 * 139.26675 * 10 9 7 13 13 N 1.31403 * 119.99981 * 165.09787 * 12 10 9 14 14 Si 1.86794 * 120.00198 * 345.09898 * 12 10 9 15 15 H 1.48508 * 109.47222 * 90.74383 * 14 12 10 16 16 H 1.48501 * 109.47268 * 210.74486 * 14 12 10 17 17 H 1.48499 * 109.47032 * 330.74312 * 14 12 10 18 18 C 1.46498 * 120.00317 * 4.69034 * 9 7 6 19 19 C 1.50699 * 109.47206 * 84.64768 * 18 9 7 20 20 O 1.20825 * 120.00209 * 0.02562 * 19 18 9 21 21 O 1.34232 * 119.99668 * 179.97438 * 19 18 9 22 22 N 1.34425 * 108.44505 * 0.02562 * 6 5 4 23 23 N 1.28758 * 109.52842 * 359.97438 * 22 6 5 24 24 H 1.08003 * 120.00019 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00063 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00374 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46925 * 4.99773 * 3 2 1 28 28 H 1.09001 * 109.46738 * 244.99903 * 3 2 1 29 29 H 1.07995 * 126.58763 * 0.23483 * 5 4 3 30 30 H 0.97001 * 120.00090 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47062 * 204.64870 * 18 9 7 32 32 H 1.09003 * 109.47066 * 324.65040 * 18 9 7 33 33 H 0.96702 * 116.99335 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3239 1.5444 1.0734 6 6 4.7915 1.4777 2.3558 7 6 6.1955 1.6507 2.7715 8 8 7.0692 1.7592 1.9325 9 7 6.5106 1.6886 4.0815 10 6 7.7990 1.9449 4.4686 11 1 8.6232 1.5018 3.9295 12 6 8.0459 2.7754 5.5555 13 7 9.2368 2.7947 6.1104 14 14 6.6847 3.8640 6.2273 15 1 5.9460 3.1344 7.2892 16 1 7.2760 5.1015 6.7966 17 1 5.7498 4.2214 5.1303 18 6 5.4750 1.4554 5.0911 19 6 5.3143 -0.0264 5.3130 20 8 5.9953 -0.8077 4.6919 21 8 4.4153 -0.4784 6.2014 22 7 3.7547 1.2276 3.1740 23 7 2.6728 1.1353 2.4820 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 4.9078 1.7310 0.1843 30 1 9.4092 3.3745 6.8687 31 1 5.7654 1.9335 6.0266 32 1 4.5302 1.8757 4.7463 33 1 4.3486 -1.4370 6.3095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609485593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:39 Heat of formation + Delta-G solvation = 0.606636 kcal Electronic energy + Delta-G solvation = -22071.142662 eV Core-core repulsion = 18521.439798 eV Total energy + Delta-G solvation = -3549.702863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.26180 -41.40303 -40.06652 -37.26481 -36.91462 -36.64620 -34.31337 -33.68841 -31.87240 -29.77680 -28.31198 -27.13376 -24.18584 -23.32595 -23.18509 -21.49086 -20.73322 -19.28440 -19.22902 -18.67542 -17.96266 -17.51258 -16.94158 -16.90092 -16.54362 -16.08586 -15.88536 -15.55502 -15.45102 -14.63849 -14.48561 -14.38150 -14.11791 -13.91965 -13.47181 -12.98789 -12.93561 -12.63999 -12.52352 -12.36390 -12.02162 -11.84295 -11.67518 -11.33110 -11.18248 -10.77785 -10.55635 -10.27262 -9.90270 -8.54056 -6.27947 0.15237 0.62300 0.81292 1.18631 1.22173 1.34514 1.44875 1.61633 1.89416 2.13920 2.31200 2.56073 2.96448 3.20859 3.43385 3.76932 3.83912 3.93707 4.01820 4.12691 4.18466 4.42528 4.49275 4.56121 4.83067 4.95148 5.42716 5.44949 5.58733 5.60743 5.68866 5.98615 6.35267 6.73539 6.90680 7.00241 7.13279 7.62109 8.62067 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.005779 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.684583 B = 4844.177768 C = 5225.274383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.200 4.200 3 C 0.142 3.858 4 N -0.342 5.342 5 C 0.107 3.893 6 C -0.116 4.116 7 C 0.556 3.444 8 O -0.586 6.586 9 N -0.448 5.448 10 C -0.335 4.335 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.904 5.904 14 Si 0.933 3.067 15 H -0.234 1.234 16 H -0.271 1.271 17 H -0.250 1.250 18 C 0.087 3.913 19 C 0.482 3.518 20 O -0.545 6.545 21 O -0.502 6.502 22 N -0.242 5.242 23 N -0.074 5.074 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.236 0.764 30 H 0.285 0.715 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.631 -1.389 -9.109 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.219 4.219 3 C 0.024 3.976 4 N -0.128 5.128 5 C -0.050 4.050 6 C -0.255 4.255 7 C 0.344 3.656 8 O -0.468 6.468 9 N -0.169 5.169 10 C -0.463 4.463 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.541 5.541 14 Si 0.754 3.246 15 H -0.159 1.159 16 H -0.197 1.197 17 H -0.174 1.174 18 C -0.038 4.038 19 C 0.324 3.676 20 O -0.434 6.434 21 O -0.315 6.315 22 N -0.115 5.115 23 N -0.053 5.053 24 H 0.132 0.868 25 H 0.137 0.863 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.165 0.835 29 H 0.252 0.748 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.171 0.829 33 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -21.989 -1.339 -8.641 23.664 hybrid contribution 1.114 -0.399 -0.175 1.197 sum -20.875 -1.739 -8.816 22.727 Atomic orbital electron populations 1.24197 0.95052 1.03879 0.94469 1.22862 0.96892 0.97141 1.05005 1.21645 0.92068 0.98678 0.85196 1.50793 1.06621 1.46460 1.08906 1.23714 0.84915 0.96471 0.99942 1.21550 0.94160 1.17224 0.92547 1.17349 0.85998 0.79578 0.82634 1.90624 1.49802 1.55022 1.51388 1.43095 1.08018 1.62010 1.03740 1.18671 0.81961 1.29579 1.16057 0.93114 1.26197 0.99597 0.96850 0.95957 1.69787 1.24153 1.37862 1.22276 0.86081 0.79253 0.79095 0.80161 1.15858 1.19670 1.17351 1.22008 0.96249 0.89991 0.95591 1.23968 0.75363 0.92917 0.75346 1.90667 1.45539 1.58825 1.48394 1.84479 1.56377 1.33080 1.57545 1.74508 0.97005 1.12396 1.27595 1.81776 1.16736 1.21780 0.85043 0.86845 0.86294 0.87821 0.85825 0.83519 0.74775 0.90512 0.87596 0.82857 0.71604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 14.32 67.79 0.97 -0.33 16 2 C -0.20 -2.54 9.72 25.66 0.25 -2.29 16 3 C 0.14 1.64 6.98 85.64 0.60 2.23 16 4 N -0.34 -7.93 3.68 -350.75 -1.29 -9.23 16 5 C 0.11 3.00 11.28 83.86 0.95 3.94 16 6 C -0.12 -4.59 6.70 40.80 0.27 -4.32 16 7 C 0.56 28.46 7.43 86.67 0.64 29.11 16 8 O -0.59 -33.26 16.76 -4.09 -0.07 -33.33 16 9 N -0.45 -24.01 1.70 -643.29 -1.09 -25.10 16 10 C -0.33 -20.66 9.38 84.07 0.79 -19.87 16 11 H 0.05 3.64 7.93 -2.91 -0.02 3.61 16 12 C 0.02 0.99 5.38 84.94 0.46 1.45 16 13 N -0.90 -54.48 13.96 21.67 0.30 -54.18 16 14 Si 0.93 41.47 24.85 68.60 1.70 43.17 16 15 H -0.23 -9.13 6.58 99.48 0.65 -8.48 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 18 C 0.09 3.91 4.12 85.63 0.35 4.26 16 19 C 0.48 20.89 7.58 71.24 0.54 21.43 16 20 O -0.54 -27.73 17.07 21.97 0.37 -27.36 16 21 O -0.50 -16.21 13.42 -51.44 -0.69 -16.90 16 22 N -0.24 -9.03 8.16 -50.00 -0.41 -9.44 16 23 N -0.07 -2.27 13.63 37.02 0.50 -1.77 16 24 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 25 H 0.12 0.72 7.84 -2.91 -0.02 0.70 16 26 H 0.10 1.60 8.06 -2.91 -0.02 1.57 16 27 H 0.12 0.93 7.79 -2.39 -0.02 0.91 16 28 H 0.15 0.72 8.08 -2.39 -0.02 0.71 16 29 H 0.24 4.86 8.06 -2.91 -0.02 4.83 16 30 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.11 4.70 3.30 -2.39 -0.01 4.70 16 32 H 0.15 6.28 5.16 -2.39 -0.01 6.27 16 33 H 0.42 9.35 9.10 -74.06 -0.67 8.68 16 Total: -1.00 -85.89 298.60 5.60 -80.29 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.45 Total: 18.23 kcal Atomic # 6 Polarization: 29.79 SS G_CDS: 5.82 Total: 35.61 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -1.99 Total: -99.72 kcal Atomic # 8 Polarization: -77.21 SS G_CDS: -0.38 Total: -77.59 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.70 Total: 43.17 kcal Total: -85.89 5.60 -80.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609485593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.898 kcal (2) G-P(sol) polarization free energy of solvation -85.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds