Wall clock time and date at job start Tue Mar 31 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32767 * 123.45968 * 2 1 4 4 S 1.75506 * 110.57566 * 180.23058 * 3 2 1 5 5 C 1.70448 * 92.44560 * 359.73328 * 4 3 2 6 6 C 1.36006 * 110.81317 * 0.02562 * 5 4 3 7 7 C 1.47200 * 123.45812 * 179.97438 * 6 5 4 8 8 O 1.21640 * 120.00020 * 184.91902 * 7 6 5 9 9 N 1.34778 * 119.99747 * 4.91020 * 7 6 5 10 10 C 1.46500 * 119.99565 * 184.96438 * 9 7 6 11 11 C 1.53005 * 109.46784 * 184.88429 * 10 9 7 12 12 N 1.46502 * 115.54769 * 84.96051 * 11 10 9 13 13 C 1.36940 * 119.99730 * 65.27175 * 12 11 10 14 14 H 1.07998 * 119.99980 * 5.75497 * 13 12 11 15 15 C 1.38816 * 119.99712 * 185.76306 * 13 12 11 16 16 N 1.31624 * 119.99976 * 354.93589 * 15 13 12 17 17 Si 1.86795 * 120.00065 * 174.94088 * 15 13 12 18 18 H 1.48504 * 109.47169 * 275.00089 * 17 15 13 19 19 H 1.48496 * 109.47159 * 34.99612 * 17 15 13 20 20 H 1.48495 * 109.47423 * 154.99972 * 17 15 13 21 21 C 1.53001 * 117.49857 * 230.62998 * 11 10 9 22 22 C 1.53000 * 117.49820 * 299.29079 * 11 10 9 23 23 H 1.09005 * 109.47150 * 270.24203 * 1 2 3 24 24 H 1.08999 * 109.46835 * 30.23563 * 1 2 3 25 25 H 1.08996 * 109.46765 * 150.24328 * 1 2 3 26 26 H 1.07998 * 124.71280 * 359.92320 * 3 2 1 27 27 H 1.07997 * 124.58950 * 180.02562 * 5 4 3 28 28 H 0.96995 * 120.00062 * 4.97318 * 9 7 6 29 29 H 1.08997 * 109.47049 * 64.88668 * 10 9 7 30 30 H 1.08997 * 109.47361 * 304.88613 * 10 9 7 31 31 H 0.96991 * 119.99988 * 245.26329 * 12 11 10 32 32 H 0.96999 * 119.99796 * 180.02562 * 16 15 13 33 33 H 1.08995 * 117.49747 * 215.00724 * 21 11 10 34 34 H 1.09002 * 117.49626 * 0.02562 * 21 11 10 35 35 H 1.08999 * 117.49842 * 359.97438 * 22 11 10 36 36 H 1.09003 * 117.49719 * 144.97482 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7163 -0.0066 5 6 3.6411 -0.9600 -0.0014 6 6 2.3033 -1.2049 0.0045 7 6 1.7262 -2.5590 0.0095 8 8 0.5219 -2.7072 -0.0757 9 7 2.5323 -3.6347 0.1083 10 6 1.9699 -4.9834 0.0040 11 6 3.0676 -6.0156 0.2699 12 7 3.3071 -6.3343 1.6796 13 6 2.3333 -6.9542 2.4164 14 1 1.4262 -7.2917 1.9373 15 6 2.5122 -7.1485 3.7792 16 7 3.6566 -6.8281 4.3451 17 14 1.1289 -7.8649 4.8100 18 1 0.2101 -6.7766 5.2303 19 1 0.3788 -8.8633 4.0064 20 1 1.6980 -8.5243 6.0127 21 6 3.2370 -7.1449 -0.7484 22 6 4.2743 -6.0218 -0.6707 23 1 -0.3634 0.0043 1.0277 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3633 -0.8921 -0.5100 26 1 1.8375 2.1102 -0.0012 27 1 4.4044 -1.7240 -0.0026 28 1 3.4846 -3.5158 0.2485 29 1 1.5661 -5.1322 -0.9974 30 1 1.1733 -5.1027 0.7383 31 1 4.1553 -6.1063 2.0910 32 1 3.7817 -6.9643 5.2973 33 1 3.5267 -8.1249 -0.3694 34 1 2.5668 -7.1523 -1.6079 35 1 4.2859 -5.2908 -1.4792 36 1 5.2464 -6.2627 -0.2405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670764416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:05 Heat of formation + Delta-G solvation = 8.723662 kcal Electronic energy + Delta-G solvation = -19281.147040 eV Core-core repulsion = 16278.089372 eV Total energy + Delta-G solvation = -3003.057668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03995 -39.19760 -37.96551 -35.42125 -34.85982 -32.08414 -31.66439 -28.94089 -27.68765 -25.96591 -25.03296 -23.29382 -21.75091 -20.94294 -19.72772 -19.14381 -18.62947 -17.94920 -17.13735 -16.49787 -16.27376 -15.91327 -15.56559 -15.12133 -14.84985 -14.62518 -14.28629 -14.07849 -13.76859 -13.54882 -13.46369 -12.99635 -12.98735 -12.84746 -12.78191 -12.29411 -12.21975 -11.85915 -11.82519 -11.75105 -11.01201 -10.97398 -10.56221 -10.11276 -9.82671 -9.21312 -9.04779 -7.99157 -5.26849 -0.20020 0.65455 0.97165 0.99656 1.43391 1.46243 1.52503 2.16837 2.36280 2.50947 3.07019 3.36558 3.64470 3.75090 3.83306 4.00168 4.18011 4.23245 4.29762 4.40609 4.66287 4.72310 4.77768 4.80784 4.83269 4.91996 5.00816 5.03809 5.19736 5.28909 5.36842 5.47231 5.53048 5.61336 6.24764 6.58219 7.24161 7.30802 8.04474 8.27720 9.23497 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.004481 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.805888 B = 6247.144551 C = 6646.210334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.080 4.080 3 C -0.243 4.243 4 S 0.247 5.753 5 C -0.210 4.210 6 C -0.182 4.182 7 C 0.566 3.434 8 O -0.579 6.579 9 N -0.701 5.701 10 C 0.159 3.841 11 C 0.097 3.903 12 N -0.699 5.699 13 C -0.232 4.232 14 H 0.070 0.930 15 C -0.067 4.067 16 N -0.964 5.964 17 Si 0.962 3.038 18 H -0.293 1.293 19 H -0.270 1.270 20 H -0.293 1.293 21 C -0.182 4.182 22 C -0.153 4.153 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.194 0.806 27 H 0.186 0.814 28 H 0.407 0.593 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.377 0.623 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 16.098 -13.078 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 C -0.378 4.378 4 S 0.514 5.486 5 C -0.349 4.349 6 C -0.200 4.200 7 C 0.353 3.647 8 O -0.461 6.461 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.004 3.996 12 N -0.337 5.337 13 C -0.364 4.364 14 H 0.088 0.912 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.792 3.208 18 H -0.220 1.220 19 H -0.195 1.195 20 H -0.219 1.219 21 C -0.222 4.222 22 C -0.191 4.191 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.212 0.788 27 H 0.204 0.796 28 H 0.243 0.757 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.210 0.790 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.104 16.765 -13.081 21.490 hybrid contribution -1.347 -1.652 1.337 2.516 sum 1.757 15.113 -11.744 19.220 Atomic orbital electron populations 1.20598 0.89179 1.03584 1.02404 1.19980 0.97789 0.90403 1.00880 1.25647 0.97226 1.03026 1.11894 1.82718 1.04043 0.94282 1.67513 1.25988 0.99075 1.05096 1.04729 1.20164 0.93421 0.93404 1.13047 1.18105 0.85989 0.84746 0.75848 1.90688 1.15811 1.87096 1.52466 1.45724 1.11679 1.05231 1.72468 1.21016 0.95379 0.80222 1.00032 1.20368 0.98039 0.98049 0.83121 1.41817 1.16583 1.69848 1.05491 1.19422 0.98078 1.28674 0.90216 0.91212 1.25434 0.99202 1.03491 0.97873 1.69787 1.24738 1.56096 1.10799 0.85319 0.79100 0.77870 0.78515 1.22035 1.19544 1.21911 1.23391 1.03037 0.94491 1.01285 1.23180 0.93441 1.01707 1.00745 0.91919 0.89424 0.91500 0.78841 0.79631 0.75673 0.90809 0.94208 0.78994 0.94003 0.90197 0.87387 0.86131 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 9.61 71.24 0.68 -1.82 16 2 C -0.08 -2.02 6.01 -19.46 -0.12 -2.14 16 3 C -0.24 -4.42 10.91 66.64 0.73 -3.70 16 4 S 0.25 3.81 23.02 -56.49 -1.30 2.51 16 5 C -0.21 -4.43 10.37 67.30 0.70 -3.74 16 6 C -0.18 -5.13 5.98 -19.87 -0.12 -5.25 16 7 C 0.57 19.93 7.78 86.60 0.67 20.61 16 8 O -0.58 -24.28 14.17 -4.16 -0.06 -24.33 16 9 N -0.70 -23.07 5.44 -466.57 -2.54 -25.61 16 10 C 0.16 5.91 5.80 86.38 0.50 6.41 16 11 C 0.10 3.60 2.22 3.61 0.01 3.61 16 12 N -0.70 -33.97 5.50 -303.33 -1.67 -35.64 16 13 C -0.23 -12.83 9.52 84.03 0.80 -12.03 16 14 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 15 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 16 N -0.96 -58.30 13.07 21.65 0.28 -58.02 16 17 Si 0.96 47.02 29.56 68.60 2.03 49.05 16 18 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 21 C -0.18 -5.83 10.11 30.62 0.31 -5.52 16 22 C -0.15 -4.32 9.85 30.62 0.30 -4.01 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 24 H 0.09 1.63 8.13 -2.39 -0.02 1.61 16 25 H 0.07 2.08 5.92 -2.39 -0.01 2.07 16 26 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 27 H 0.19 3.13 7.07 -2.91 -0.02 3.11 16 28 H 0.41 11.47 6.81 -92.71 -0.63 10.84 16 29 H 0.07 2.47 7.90 -2.39 -0.02 2.45 16 30 H 0.04 1.82 7.70 -2.39 -0.02 1.80 16 31 H 0.38 19.53 8.04 -92.72 -0.75 18.79 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.11 2.93 8.05 -2.39 -0.02 2.91 16 35 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -70.12 322.12 1.42 -68.70 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.26 Total: 34.32 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.93 Total: -10.98 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -3.92 Total: -119.27 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Total: -70.12 1.42 -68.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670764416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.422 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds