Wall clock time and date at job start Tue Mar 31 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70448 * 124.59005 * 2 1 4 4 C 1.75502 * 92.44474 * 179.73424 * 3 2 1 5 5 C 1.32771 * 110.57663 * 359.97438 * 4 3 2 6 6 C 1.36002 * 124.59108 * 179.69619 * 2 1 3 7 7 C 1.47197 * 123.46284 * 0.23199 * 6 2 1 8 8 O 1.21634 * 119.99680 * 359.97438 * 7 6 2 9 9 N 1.34779 * 119.99999 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.30995 * 120.00011 * 125.00129 * 11 10 9 13 13 C 1.50702 * 119.99701 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46707 * 125.00202 * 13 12 11 15 15 C 1.36942 * 119.99616 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00044 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99792 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47094 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46790 * 120.00406 * 19 17 15 22 22 H 1.48502 * 109.46900 * 240.00057 * 19 17 15 23 23 H 1.09000 * 109.47536 * 0.02634 * 1 2 3 24 24 H 1.08998 * 109.46949 * 120.02877 * 1 2 3 25 25 H 1.09000 * 109.46989 * 240.02657 * 1 2 3 26 26 H 1.07995 * 124.71512 * 180.02562 * 4 3 2 27 27 H 1.07997 * 123.46022 * 179.97438 * 5 4 3 28 28 H 0.96996 * 120.00160 * 0.02562 * 9 7 6 29 29 H 1.08994 * 109.47163 * 300.00236 * 10 9 7 30 30 H 1.08995 * 109.46892 * 60.00430 * 10 9 7 31 31 H 1.07998 * 119.99609 * 304.99856 * 11 10 9 32 32 H 1.07991 * 120.00159 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.46863 * 244.99700 * 13 12 11 34 34 H 1.08999 * 109.47495 * 5.00244 * 13 12 11 35 35 H 0.96997 * 120.00511 * 0.02562 * 14 13 12 36 36 H 0.97002 * 120.00489 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 0.0081 5 6 3.6944 -0.8313 0.0111 6 6 2.2791 -1.1196 0.0059 7 6 1.7290 -2.4849 0.0082 8 8 0.5247 -2.6553 0.0052 9 7 2.5598 -3.5462 0.0136 10 6 2.0122 -4.9050 0.0165 11 6 3.1423 -5.9019 0.0231 12 6 3.2002 -6.8201 0.9556 13 6 4.3301 -7.8174 0.9618 14 7 5.0053 -7.7822 2.2615 15 6 6.0703 -8.6086 2.5023 16 1 6.4127 -9.2860 1.7340 17 6 6.7105 -8.5748 3.7336 18 7 6.2934 -7.7489 4.6697 19 14 8.1637 -9.7016 4.0619 20 1 8.4325 -10.5266 2.8568 21 1 9.3622 -8.8840 4.3790 22 1 7.8521 -10.5894 5.2108 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5143 -0.8897 25 1 -0.3633 -0.5134 0.8902 26 1 4.9537 0.8938 0.0112 27 1 4.4576 -1.5954 0.0157 28 1 3.5202 -3.4103 0.0164 29 1 1.3975 -5.0471 0.9052 30 1 1.4022 -5.0527 -0.8746 31 1 3.9044 -5.8593 -0.7410 32 1 2.4380 -6.8630 1.7193 33 1 3.9331 -8.8172 0.7856 34 1 5.0417 -7.5652 0.1757 35 1 4.6975 -7.1740 2.9516 36 1 6.7409 -7.7250 5.5300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732848063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:48 Heat of formation + Delta-G solvation = 15.603136 kcal Electronic energy + Delta-G solvation = -18155.357386 eV Core-core repulsion = 15152.598034 eV Total energy + Delta-G solvation = -3002.759352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00763 -37.23180 -36.20567 -34.74641 -32.89236 -32.09074 -30.63711 -28.11636 -26.58684 -24.48898 -23.28728 -21.97782 -21.58305 -19.97305 -19.01893 -17.49660 -17.10341 -16.90167 -15.79702 -15.42923 -14.93006 -14.55847 -14.21840 -13.80763 -13.66512 -13.51731 -13.44516 -13.24241 -12.83211 -12.73149 -12.32421 -12.02243 -11.84317 -11.83768 -11.30617 -11.05182 -10.85422 -10.62912 -10.07275 -9.98264 -9.82227 -9.28018 -9.07212 -8.98376 -8.76783 -8.63168 -6.96699 -5.79827 -3.09502 0.57810 1.23007 1.62757 1.78133 2.29234 3.28266 3.41350 3.45538 3.47256 3.49400 4.42061 4.57686 4.67129 4.85645 4.97871 5.10175 5.25867 5.30965 5.46163 5.53404 5.59124 5.67581 5.73547 5.81856 5.93539 5.99722 6.01870 6.12091 6.35847 6.46266 6.55884 6.89422 7.13481 7.49821 7.66975 8.18133 8.38400 9.49813 10.06105 10.41378 11.42922 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002793 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.649117 B =10021.108963 C =10809.046150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.141 4.141 3 S 0.174 5.826 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.176 4.176 7 C 0.577 3.423 8 O -0.542 6.542 9 N -0.718 5.718 10 C 0.157 3.843 11 C -0.202 4.202 12 C -0.106 4.106 13 C 0.172 3.828 14 N -0.730 5.730 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.402 0.598 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.385 0.615 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 18.761 -11.984 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.261 4.261 3 S 0.439 5.561 4 C -0.370 4.370 5 C -0.132 4.132 6 C -0.193 4.193 7 C 0.364 3.636 8 O -0.421 6.421 9 N -0.369 5.369 10 C 0.034 3.966 11 C -0.222 4.222 12 C -0.125 4.125 13 C 0.045 3.955 14 N -0.374 5.374 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.187 0.813 27 H 0.168 0.832 28 H 0.237 0.763 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.219 0.781 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.791 20.022 -12.019 25.322 hybrid contribution 1.709 -1.956 0.542 2.653 sum -8.081 18.067 -11.476 22.878 Atomic orbital electron populations 1.20410 0.86630 1.01857 1.04800 1.24545 1.01835 0.96899 1.02845 1.83048 0.95147 1.07417 1.70473 1.25402 1.02294 0.97200 1.12088 1.21279 0.94595 0.96522 1.00837 1.20181 0.92796 0.93721 1.12592 1.17548 0.86099 0.83688 0.76303 1.90764 1.14447 1.86369 1.50564 1.45906 1.10276 1.05742 1.74975 1.20318 0.94769 0.79242 1.02264 1.22691 1.00076 0.97908 1.01479 1.23337 0.97852 0.95514 0.95834 1.19828 0.90517 0.94864 0.90252 1.42312 1.36337 1.47653 1.11136 1.19291 1.05879 1.14269 0.97847 0.91014 1.24770 0.99973 0.99833 0.96405 1.69675 1.43120 1.40003 1.05253 0.86092 0.82254 0.79935 0.77760 1.20504 1.21815 1.21785 0.91899 0.89531 0.89443 0.81326 0.83226 0.76255 0.91135 0.91024 0.86758 0.87246 0.95122 0.95665 0.78129 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 8.77 36.01 0.32 -0.45 16 2 C -0.14 -1.49 6.34 -35.11 -0.22 -1.72 16 3 S 0.17 1.40 22.95 -107.50 -2.47 -1.06 16 4 C -0.24 -1.94 11.12 28.86 0.32 -1.62 16 5 C -0.10 -1.00 9.91 -39.02 -0.39 -1.38 16 6 C -0.18 -2.07 5.98 -104.63 -0.63 -2.70 16 7 C 0.58 7.94 7.79 -12.62 -0.10 7.84 16 8 O -0.54 -8.79 14.64 5.25 0.08 -8.72 16 9 N -0.72 -8.92 5.53 -62.64 -0.35 -9.26 16 10 C 0.16 2.03 6.11 -5.19 -0.03 2.00 16 11 C -0.20 -2.77 9.24 -36.02 -0.33 -3.10 16 12 C -0.11 -1.72 9.24 -36.02 -0.33 -2.06 16 13 C 0.17 3.45 6.70 -5.19 -0.03 3.41 16 14 N -0.73 -18.63 5.59 -61.08 -0.34 -18.98 16 15 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 24 H 0.09 0.90 7.79 -51.93 -0.40 0.49 16 25 H 0.09 0.94 7.78 -51.93 -0.40 0.54 16 26 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.15 1.20 7.10 -52.49 -0.37 0.83 16 28 H 0.40 4.30 7.01 -40.82 -0.29 4.01 16 29 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.11 1.47 7.84 -52.49 -0.41 1.06 16 32 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.39 10.35 7.66 -40.82 -0.31 10.04 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -32.64 326.52 -8.78 -41.42 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.65 Total: 9.12 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.67 Total: -7.21 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.04 Total: -55.78 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.64 -8.78 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732848063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.023 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds