Wall clock time and date at job start Tue Mar 31 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70448 * 124.59005 * 2 1 4 4 C 1.75502 * 92.44474 * 179.73424 * 3 2 1 5 5 C 1.32771 * 110.57663 * 359.97438 * 4 3 2 6 6 C 1.36002 * 124.59108 * 179.69619 * 2 1 3 7 7 C 1.47197 * 123.46284 * 0.23199 * 6 2 1 8 8 O 1.21634 * 119.99680 * 359.97438 * 7 6 2 9 9 N 1.34779 * 119.99999 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.30995 * 120.00011 * 125.00129 * 11 10 9 13 13 C 1.50702 * 119.99701 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46707 * 125.00202 * 13 12 11 15 15 C 1.36942 * 119.99616 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00044 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99792 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47094 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46790 * 120.00406 * 19 17 15 22 22 H 1.48502 * 109.46900 * 240.00057 * 19 17 15 23 23 H 1.09000 * 109.47536 * 0.02634 * 1 2 3 24 24 H 1.08998 * 109.46949 * 120.02877 * 1 2 3 25 25 H 1.09000 * 109.46989 * 240.02657 * 1 2 3 26 26 H 1.07995 * 124.71512 * 180.02562 * 4 3 2 27 27 H 1.07997 * 123.46022 * 179.97438 * 5 4 3 28 28 H 0.96996 * 120.00160 * 0.02562 * 9 7 6 29 29 H 1.08994 * 109.47163 * 300.00236 * 10 9 7 30 30 H 1.08995 * 109.46892 * 60.00430 * 10 9 7 31 31 H 1.07998 * 119.99609 * 304.99856 * 11 10 9 32 32 H 1.07991 * 120.00159 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.46863 * 244.99700 * 13 12 11 34 34 H 1.08999 * 109.47495 * 5.00244 * 13 12 11 35 35 H 0.96997 * 120.00511 * 0.02562 * 14 13 12 36 36 H 0.97002 * 120.00489 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 0.0081 5 6 3.6944 -0.8313 0.0111 6 6 2.2791 -1.1196 0.0059 7 6 1.7290 -2.4849 0.0082 8 8 0.5247 -2.6553 0.0052 9 7 2.5598 -3.5462 0.0136 10 6 2.0122 -4.9050 0.0165 11 6 3.1423 -5.9019 0.0231 12 6 3.2002 -6.8201 0.9556 13 6 4.3301 -7.8174 0.9618 14 7 5.0053 -7.7822 2.2615 15 6 6.0703 -8.6086 2.5023 16 1 6.4127 -9.2860 1.7340 17 6 6.7105 -8.5748 3.7336 18 7 6.2934 -7.7489 4.6697 19 14 8.1637 -9.7016 4.0619 20 1 8.4325 -10.5266 2.8568 21 1 9.3622 -8.8840 4.3790 22 1 7.8521 -10.5894 5.2108 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5143 -0.8897 25 1 -0.3633 -0.5134 0.8902 26 1 4.9537 0.8938 0.0112 27 1 4.4576 -1.5954 0.0157 28 1 3.5202 -3.4103 0.0164 29 1 1.3975 -5.0471 0.9052 30 1 1.4022 -5.0527 -0.8746 31 1 3.9044 -5.8593 -0.7410 32 1 2.4380 -6.8630 1.7193 33 1 3.9331 -8.8172 0.7856 34 1 5.0417 -7.5652 0.1757 35 1 4.6975 -7.1740 2.9516 36 1 6.7409 -7.7250 5.5300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732848063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:48 Heat of formation + Delta-G solvation = -5.870480 kcal Electronic energy + Delta-G solvation = -18156.288551 eV Core-core repulsion = 15152.598034 eV Total energy + Delta-G solvation = -3003.690518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00154 -38.12364 -37.53930 -36.25771 -34.44969 -32.89735 -32.40627 -29.33053 -27.74593 -25.99199 -24.47010 -23.38807 -22.55386 -21.11658 -20.13383 -19.09590 -18.23837 -17.80515 -16.81199 -16.73273 -16.46404 -15.85360 -15.42676 -15.17000 -15.02949 -14.72767 -14.48794 -14.28109 -14.09950 -13.60457 -13.47887 -13.31859 -13.07470 -12.89174 -12.76019 -12.55952 -12.15580 -12.00785 -11.99107 -11.78323 -11.11361 -10.98327 -10.38935 -10.03699 -9.73660 -9.37732 -9.02278 -7.96756 -5.26855 -0.20672 0.53936 0.92501 0.99157 1.07944 1.48185 1.48999 1.59353 2.31581 2.44154 2.56616 3.37273 3.70183 3.71842 3.85295 4.07833 4.16880 4.22609 4.38141 4.46463 4.62879 4.65641 4.66107 4.70538 4.91723 4.96644 4.99714 5.05463 5.17243 5.28725 5.34158 5.47343 5.64612 5.82304 6.25377 6.50954 7.16664 7.31392 8.05299 8.29286 9.26953 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002793 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.649117 B =10021.108963 C =10809.046150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.162 4.162 3 S 0.227 5.773 4 C -0.233 4.233 5 C -0.118 4.118 6 C -0.201 4.201 7 C 0.572 3.428 8 O -0.576 6.576 9 N -0.712 5.712 10 C 0.159 3.841 11 C -0.162 4.162 12 C -0.131 4.131 13 C 0.174 3.826 14 N -0.745 5.745 15 C -0.248 4.248 16 H 0.079 0.921 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.293 1.293 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.162 0.838 28 H 0.412 0.588 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.374 0.626 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 19.898 -13.197 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.282 4.282 3 S 0.493 5.507 4 C -0.368 4.368 5 C -0.146 4.146 6 C -0.218 4.218 7 C 0.360 3.640 8 O -0.458 6.458 9 N -0.364 5.364 10 C 0.036 3.964 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.048 3.952 14 N -0.388 5.388 15 C -0.379 4.379 16 H 0.097 0.903 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.220 1.220 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.213 0.787 27 H 0.179 0.821 28 H 0.248 0.752 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.206 0.794 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.739 21.152 -13.280 26.460 hybrid contribution 1.327 -2.193 0.819 2.691 sum -7.412 18.958 -12.461 23.867 Atomic orbital electron populations 1.20372 0.86578 1.03067 1.03460 1.24849 1.02529 0.98183 1.02685 1.82855 0.93976 1.05243 1.68665 1.25809 1.03718 0.96872 1.10416 1.21386 0.93780 0.97622 1.01838 1.20223 0.94148 0.92830 1.14591 1.17933 0.85772 0.84695 0.75590 1.90738 1.15814 1.86949 1.52252 1.45822 1.10750 1.05243 1.74579 1.20240 0.94420 0.79472 1.02264 1.22764 0.99469 0.95873 0.99987 1.23011 0.97666 0.96630 0.97715 1.19911 0.91369 0.96039 0.87892 1.42551 1.36285 1.47046 1.12892 1.19712 1.06146 1.14126 0.97949 0.90341 1.25626 1.03050 1.01749 0.96432 1.69832 1.44677 1.41970 1.05564 0.85030 0.78693 0.77990 0.77772 1.18867 1.21859 1.22049 0.89366 0.90672 0.91075 0.78705 0.82055 0.75163 0.92194 0.90110 0.85123 0.87484 0.95133 0.94807 0.79421 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 8.77 71.24 0.62 -0.84 16 2 C -0.16 -3.28 6.34 25.17 0.16 -3.13 16 3 S 0.23 3.12 22.95 -56.49 -1.30 1.82 16 4 C -0.23 -3.24 11.12 66.64 0.74 -2.49 16 5 C -0.12 -2.08 9.91 22.67 0.22 -1.86 16 6 C -0.20 -4.60 5.98 -19.87 -0.12 -4.71 16 7 C 0.57 15.72 7.79 86.60 0.67 16.40 16 8 O -0.58 -19.09 14.64 -4.14 -0.06 -19.16 16 9 N -0.71 -17.17 5.53 -470.33 -2.60 -19.77 16 10 C 0.16 3.98 6.11 85.63 0.52 4.51 16 11 C -0.16 -4.17 9.24 25.65 0.24 -3.94 16 12 C -0.13 -4.18 9.24 25.65 0.24 -3.94 16 13 C 0.17 6.84 6.70 85.63 0.57 7.42 16 14 N -0.75 -38.18 5.59 -347.16 -1.94 -40.12 16 15 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 18 N -0.97 -59.58 13.06 21.65 0.28 -59.29 16 19 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 24 H 0.07 1.59 7.79 -2.39 -0.02 1.58 16 25 H 0.07 1.59 7.78 -2.39 -0.02 1.57 16 26 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.16 2.30 7.10 -2.91 -0.02 2.28 16 28 H 0.41 8.26 7.01 -92.71 -0.65 7.62 16 29 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.13 3.00 7.84 -2.91 -0.02 2.98 16 32 H 0.11 3.47 7.84 -2.92 -0.02 3.44 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.03 1.28 7.79 -2.39 -0.02 1.27 16 35 H 0.37 20.48 7.66 -92.71 -0.71 19.77 16 36 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -70.11 326.52 1.34 -68.77 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.26 Total: 29.39 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.18 Total: -9.53 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -4.26 Total: -119.18 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.30 Total: 1.82 kcal Total: -70.11 1.34 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732848063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.902 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds