Wall clock time and date at job start Tue Mar 31 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35837 * 117.00429 * 2 1 4 4 C 1.38608 * 120.55005 * 0.25473 * 3 2 1 5 5 N 1.31834 * 120.79485 * 180.25807 * 4 3 2 6 6 C 1.31933 * 122.07007 * 359.74073 * 5 4 3 7 7 C 1.37950 * 121.02376 * 359.97438 * 6 5 4 8 8 C 1.39762 * 119.08169 * 0.02562 * 7 6 5 9 9 C 1.48256 * 120.93745 * 179.97438 * 8 7 6 10 10 C 1.39836 * 119.53916 * 129.99722 * 9 8 7 11 11 C 1.37713 * 121.16460 * 179.97438 * 10 9 8 12 12 C 1.39579 * 120.19268 * 0.25973 * 11 10 9 13 13 C 1.43204 * 120.45571 * 179.71533 * 12 11 10 14 14 N 7.30428 * 143.02408 * 178.60303 * 2 1 3 15 15 C 1.46544 * 119.09099 * 359.50635 * 12 11 10 16 16 C 1.40833 * 120.55209 * 180.22128 * 15 12 11 17 17 H 1.08007 * 120.00098 * 336.15331 * 16 15 12 18 18 C 1.40239 * 120.00140 * 156.15168 * 16 15 12 19 19 N 1.30655 * 120.00040 * 341.80104 * 18 16 15 20 20 Si 1.86799 * 119.99951 * 161.79734 * 18 16 15 21 21 H 1.48507 * 109.46930 * 90.00275 * 20 18 16 22 22 H 1.48494 * 109.47190 * 210.00049 * 20 18 16 23 23 H 1.48492 * 109.47400 * 330.00541 * 20 18 16 24 24 C 1.38636 * 119.53493 * 309.97553 * 9 8 7 25 25 H 1.09004 * 109.46698 * 299.99709 * 1 2 3 26 26 H 1.08999 * 109.47319 * 59.99480 * 1 2 3 27 27 H 1.08993 * 109.47697 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.60583 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.48655 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.46558 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.42317 * 0.02562 * 10 9 8 32 32 H 1.08003 * 119.90573 * 179.97438 * 11 10 9 33 33 H 0.96992 * 120.00539 * 185.04205 * 19 18 16 34 34 H 1.08001 * 120.13632 * 0.04220 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.3022 2.3800 0.0053 5 7 1.8957 3.5571 0.0002 6 6 3.2094 3.6793 -0.0050 7 6 4.0267 2.5680 -0.0048 8 6 3.4453 1.2971 0.0005 9 6 4.2846 0.0749 0.0003 10 6 4.0338 -0.9338 0.9357 11 6 4.7922 -2.0829 0.9653 12 6 5.8369 -2.2580 0.0564 13 6 6.6330 -3.4480 0.0860 14 7 7.2643 -4.3921 0.1071 15 6 6.1050 -1.2095 -0.9316 16 6 7.1484 -1.3563 -1.8661 17 1 7.9802 -2.0100 -1.6485 18 6 7.1074 -0.6537 -3.0791 19 7 5.9781 -0.1555 -3.5076 20 14 8.6673 -0.4300 -4.0821 21 1 8.8131 -1.5639 -5.0300 22 1 8.5889 0.8434 -4.8419 23 1 9.8399 -0.3919 -3.1719 24 6 5.3069 -0.0520 -0.9275 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2235 2.3265 0.0091 29 1 3.6517 4.6646 -0.0086 30 1 5.1011 2.6784 -0.0086 31 1 3.2306 -0.8099 1.6471 32 1 4.5809 -2.8488 1.6968 33 1 5.9341 0.2664 -4.3799 34 1 5.4896 0.7352 -1.6440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243072085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:29 Heat of formation + Delta-G solvation = 37.935577 kcal Electronic energy + Delta-G solvation = -20434.863540 eV Core-core repulsion = 17297.628644 eV Total energy + Delta-G solvation = -3137.234896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.37046 -37.83970 -37.62081 -35.19958 -34.24427 -32.65769 -30.30605 -29.91263 -29.01390 -27.34022 -25.77563 -23.90724 -22.60530 -21.13922 -21.02877 -18.01394 -17.60336 -17.23752 -16.46307 -16.17575 -15.62893 -15.24634 -14.19378 -14.09161 -13.95621 -13.75349 -13.32357 -13.23772 -12.88452 -12.67657 -12.08411 -12.00074 -11.79192 -11.74407 -11.59535 -11.42810 -11.26720 -11.19353 -10.87301 -10.60075 -10.17239 -9.87898 -9.57733 -9.20538 -9.17779 -8.25296 -7.77720 -7.40314 -7.14200 -4.72887 1.30816 1.45525 2.22954 2.64795 2.90567 2.94697 3.05877 3.42256 3.67241 3.91490 3.97241 4.20003 4.43550 4.66874 4.87628 5.06456 5.15541 5.19843 5.33059 5.38144 5.47311 5.52790 5.73376 5.83743 6.00670 6.15227 6.35524 6.45656 6.68419 6.78087 6.84543 6.96818 7.13799 7.45023 7.50438 7.66170 7.74282 7.84229 8.17105 8.18303 8.41042 8.51928 8.82265 9.73538 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.006105 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.868607 B = 4585.621667 C = 5780.645935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.084 3.916 4 C 0.008 3.992 5 N -0.465 5.465 6 C 0.056 3.944 7 C -0.126 4.126 8 C -0.005 4.005 9 C -0.018 4.018 10 C -0.216 4.216 11 C -0.030 4.030 12 C -0.185 4.185 13 C 0.300 3.700 14 N -0.511 5.511 15 C 0.148 3.852 16 C -0.430 4.430 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.763 5.763 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.291 0.709 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 7.354 2.584 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.203 6.203 3 C 0.036 3.964 4 C -0.149 4.149 5 N -0.175 5.175 6 C -0.101 4.101 7 C -0.145 4.145 8 C -0.014 4.014 9 C -0.019 4.019 10 C -0.235 4.235 11 C -0.051 4.051 12 C -0.191 4.191 13 C -0.009 4.009 14 N -0.190 5.190 15 C 0.142 3.858 16 C -0.457 4.457 17 H 0.105 0.895 18 C -0.147 4.147 19 N -0.385 5.385 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.158 4.158 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.461 6.610 2.436 10.261 hybrid contribution 0.494 -0.180 -0.661 0.845 sum -6.967 6.431 1.775 9.646 Atomic orbital electron populations 1.23075 0.79151 1.04036 1.00942 1.86258 1.20417 1.25573 1.88029 1.20137 0.92495 0.85701 0.98070 1.22694 1.00026 0.87259 1.04932 1.67387 1.12511 1.26457 1.11150 1.22448 0.88784 0.98758 1.00120 1.22193 1.01777 0.91276 0.99288 1.18946 0.89700 0.94646 0.98084 1.18252 0.95125 0.91673 0.96878 1.20006 1.04111 0.95783 1.03626 1.20352 0.93093 0.95944 0.95711 1.16965 1.02247 0.91557 1.08298 1.25804 0.91820 0.92216 0.91064 1.81011 1.12364 1.13266 1.12391 1.18302 0.90377 0.88293 0.88808 1.19761 1.05280 1.20944 0.99735 0.89494 1.26118 0.97872 0.92220 0.98459 1.69690 1.26157 1.24674 1.18007 0.86174 0.81534 0.78979 0.79645 1.18957 1.19500 1.17837 1.21339 0.96627 0.98577 0.99218 0.92886 0.92821 0.88168 0.83070 0.82911 0.83998 0.88406 0.88218 0.89784 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 101.05 0.99 1.24 16 2 O -0.29 -4.68 9.00 -19.23 -0.17 -4.86 16 3 C 0.08 1.40 6.61 -38.70 -0.26 1.14 16 4 C 0.01 0.12 10.22 -17.41 -0.18 -0.06 16 5 N -0.47 -7.23 10.34 -13.21 -0.14 -7.37 16 6 C 0.06 0.81 11.16 -17.61 -0.20 0.62 16 7 C -0.13 -2.00 9.60 -39.12 -0.38 -2.37 16 8 C -0.01 -0.10 5.47 -104.46 -0.57 -0.67 16 9 C -0.02 -0.38 5.33 -105.03 -0.56 -0.94 16 10 C -0.22 -4.33 8.77 -39.18 -0.34 -4.68 16 11 C -0.03 -0.62 9.74 -39.27 -0.38 -1.01 16 12 C -0.18 -4.24 5.95 -104.12 -0.62 -4.86 16 13 C 0.30 7.08 14.27 -22.48 -0.32 6.76 16 14 N -0.51 -12.36 18.54 41.83 0.78 -11.59 16 15 C 0.15 3.55 5.74 -104.68 -0.60 2.95 16 16 C -0.43 -10.42 8.58 -37.85 -0.32 -10.75 16 17 H 0.09 2.14 7.36 -52.48 -0.39 1.75 16 18 C 0.08 1.72 5.14 -17.30 -0.09 1.63 16 19 N -0.76 -17.45 10.96 55.56 0.61 -16.84 16 20 Si 0.91 17.07 29.60 -169.99 -5.03 12.04 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.25 -4.79 7.11 56.52 0.40 -4.39 16 24 C -0.14 -3.13 8.16 -38.54 -0.31 -3.44 16 25 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 26 H 0.05 0.50 7.69 -51.93 -0.40 0.11 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.15 1.77 6.32 -52.49 -0.33 1.44 16 29 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 31 H 0.10 1.82 7.69 -52.49 -0.40 1.42 16 32 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 33 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 34 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -27.41 307.83 -6.53 -33.93 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.07 Total: 4.46 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -4.14 Total: -14.43 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 1.25 Total: -35.79 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.17 Total: -4.86 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.41 -6.53 -33.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243072085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.867 kcal (2) G-P(sol) polarization free energy of solvation -27.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds