Wall clock time and date at job start Tue Mar 31 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35837 * 117.00429 * 2 1 4 4 C 1.38608 * 120.55005 * 0.25473 * 3 2 1 5 5 N 1.31834 * 120.79485 * 180.25807 * 4 3 2 6 6 C 1.31933 * 122.07007 * 359.74073 * 5 4 3 7 7 C 1.37950 * 121.02376 * 359.97438 * 6 5 4 8 8 C 1.39762 * 119.08169 * 0.02562 * 7 6 5 9 9 C 1.48256 * 120.93745 * 179.97438 * 8 7 6 10 10 C 1.39836 * 119.53916 * 129.99722 * 9 8 7 11 11 C 1.37713 * 121.16460 * 179.97438 * 10 9 8 12 12 C 1.39579 * 120.19268 * 0.25973 * 11 10 9 13 13 C 1.43204 * 120.45571 * 179.71533 * 12 11 10 14 14 N 7.30428 * 143.02408 * 178.60303 * 2 1 3 15 15 C 1.46544 * 119.09099 * 359.50635 * 12 11 10 16 16 C 1.40833 * 120.55209 * 180.22128 * 15 12 11 17 17 H 1.08007 * 120.00098 * 336.15331 * 16 15 12 18 18 C 1.40239 * 120.00140 * 156.15168 * 16 15 12 19 19 N 1.30655 * 120.00040 * 341.80104 * 18 16 15 20 20 Si 1.86799 * 119.99951 * 161.79734 * 18 16 15 21 21 H 1.48507 * 109.46930 * 90.00275 * 20 18 16 22 22 H 1.48494 * 109.47190 * 210.00049 * 20 18 16 23 23 H 1.48492 * 109.47400 * 330.00541 * 20 18 16 24 24 C 1.38636 * 119.53493 * 309.97553 * 9 8 7 25 25 H 1.09004 * 109.46698 * 299.99709 * 1 2 3 26 26 H 1.08999 * 109.47319 * 59.99480 * 1 2 3 27 27 H 1.08993 * 109.47697 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.60583 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.48655 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.46558 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.42317 * 0.02562 * 10 9 8 32 32 H 1.08003 * 119.90573 * 179.97438 * 11 10 9 33 33 H 0.96992 * 120.00539 * 185.04205 * 19 18 16 34 34 H 1.08001 * 120.13632 * 0.04220 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.3022 2.3800 0.0053 5 7 1.8957 3.5571 0.0002 6 6 3.2094 3.6793 -0.0050 7 6 4.0267 2.5680 -0.0048 8 6 3.4453 1.2971 0.0005 9 6 4.2846 0.0749 0.0003 10 6 4.0338 -0.9338 0.9357 11 6 4.7922 -2.0829 0.9653 12 6 5.8369 -2.2580 0.0564 13 6 6.6330 -3.4480 0.0860 14 7 7.2643 -4.3921 0.1071 15 6 6.1050 -1.2095 -0.9316 16 6 7.1484 -1.3563 -1.8661 17 1 7.9802 -2.0100 -1.6485 18 6 7.1074 -0.6537 -3.0791 19 7 5.9781 -0.1555 -3.5076 20 14 8.6673 -0.4300 -4.0821 21 1 8.8131 -1.5639 -5.0300 22 1 8.5889 0.8434 -4.8419 23 1 9.8399 -0.3919 -3.1719 24 6 5.3069 -0.0520 -0.9275 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2235 2.3265 0.0091 29 1 3.6517 4.6646 -0.0086 30 1 5.1011 2.6784 -0.0086 31 1 3.2306 -0.8099 1.6471 32 1 4.5809 -2.8488 1.6968 33 1 5.9341 0.2664 -4.3799 34 1 5.4896 0.7352 -1.6440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243072085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:25 Heat of formation + Delta-G solvation = 24.037082 kcal Electronic energy + Delta-G solvation = -20435.466224 eV Core-core repulsion = 17297.628644 eV Total energy + Delta-G solvation = -3137.837580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.56914 -39.37139 -38.88116 -37.03107 -35.92069 -34.10117 -31.78058 -31.33014 -30.51743 -28.28164 -27.49877 -25.34401 -23.80404 -22.75122 -22.54224 -19.56303 -19.06235 -18.73739 -17.65850 -17.60799 -16.77235 -16.69546 -15.66737 -15.47908 -15.28482 -15.00292 -14.83077 -14.57981 -14.46670 -14.39233 -13.69028 -13.49118 -13.39673 -13.20848 -13.09954 -12.81860 -12.63673 -12.44658 -12.27210 -12.13537 -11.84134 -11.54786 -11.23096 -10.54764 -10.40352 -9.53178 -9.47430 -8.98461 -8.81625 -6.52847 -0.09302 0.26757 0.65130 1.01325 1.36350 1.46886 1.53050 2.04065 2.12621 2.32125 2.40154 2.65904 2.90109 3.54097 3.61630 3.66059 3.68705 3.96795 4.04617 4.39782 4.42116 4.46231 4.51279 4.67351 4.76406 4.81456 4.89306 4.97373 5.06858 5.21539 5.30928 5.45841 5.62117 5.78693 5.93183 6.05204 6.12838 6.38995 6.44317 6.65101 6.77474 6.97168 7.00947 8.07623 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.006105 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.868607 B = 4585.621667 C = 5780.645935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.080 3.920 4 C 0.014 3.986 5 N -0.472 5.472 6 C 0.059 3.941 7 C -0.127 4.127 8 C -0.043 4.043 9 C -0.008 4.008 10 C -0.211 4.211 11 C -0.027 4.027 12 C -0.207 4.207 13 C 0.306 3.694 14 N -0.530 5.530 15 C 0.128 3.872 16 C -0.463 4.463 17 H 0.071 0.929 18 C 0.047 3.953 19 N -0.786 5.786 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.253 1.253 23 H -0.260 1.260 24 C -0.157 4.157 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.184 0.816 29 H 0.186 0.814 30 H 0.147 0.853 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.300 0.700 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 8.844 2.750 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.032 3.968 4 C -0.144 4.144 5 N -0.182 5.182 6 C -0.098 4.098 7 C -0.147 4.147 8 C -0.051 4.051 9 C -0.009 4.009 10 C -0.230 4.230 11 C -0.047 4.047 12 C -0.214 4.214 13 C -0.003 4.003 14 N -0.210 5.210 15 C 0.123 3.877 16 C -0.491 4.491 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.408 5.408 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.177 1.177 23 H -0.183 1.183 24 C -0.177 4.177 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.134 0.866 28 H 0.200 0.800 29 H 0.203 0.797 30 H 0.165 0.835 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.970 8.102 2.614 12.366 hybrid contribution 0.764 -0.594 -0.636 1.159 sum -8.205 7.508 1.978 11.296 Atomic orbital electron populations 1.23422 0.76438 1.05724 1.02556 1.86209 1.23324 1.25599 1.87948 1.20201 0.92022 0.86662 0.97899 1.23144 1.01393 0.86339 1.03515 1.67495 1.12934 1.26720 1.11069 1.22920 0.88431 0.99653 0.98778 1.22339 1.02393 0.91060 0.98904 1.19025 0.90617 0.94406 1.01070 1.18508 0.94145 0.92723 0.95499 1.20279 1.04034 0.95266 1.03451 1.20634 0.91984 0.96725 0.95381 1.17171 1.03400 0.91436 1.09370 1.25981 0.91548 0.92168 0.90568 1.80986 1.12952 1.13915 1.13180 1.18603 0.90866 0.89051 0.89212 1.19844 1.05500 1.22471 1.01235 0.91044 1.26762 1.00498 0.91443 0.98729 1.69702 1.27517 1.24857 1.18752 0.85264 0.77658 0.79426 0.78037 1.18994 1.17666 1.18334 1.21240 0.98017 0.98152 1.00252 0.90761 0.91589 0.86638 0.79956 0.79672 0.83478 0.86495 0.85703 0.88839 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.82 113.37 1.11 1.35 16 2 O -0.32 -9.65 9.00 -91.72 -0.83 -10.48 16 3 C 0.08 2.54 6.61 22.84 0.15 2.69 16 4 C 0.01 0.37 10.22 84.78 0.87 1.23 16 5 N -0.47 -13.34 10.34 -195.70 -2.02 -15.36 16 6 C 0.06 1.56 11.16 84.61 0.94 2.51 16 7 C -0.13 -3.91 9.60 22.57 0.22 -3.69 16 8 C -0.04 -1.52 5.47 -19.76 -0.11 -1.63 16 9 C -0.01 -0.32 5.33 -20.13 -0.11 -0.42 16 10 C -0.21 -8.31 8.77 22.53 0.20 -8.11 16 11 C -0.03 -1.09 9.74 22.47 0.22 -0.87 16 12 C -0.21 -9.74 5.95 -19.54 -0.12 -9.85 16 13 C 0.31 14.73 14.27 88.33 1.26 15.99 16 14 N -0.53 -26.10 18.54 19.00 0.35 -25.75 16 15 C 0.13 6.35 5.74 -19.90 -0.11 6.24 16 16 C -0.46 -23.32 8.58 23.39 0.20 -23.12 16 17 H 0.07 3.70 7.36 -2.91 -0.02 3.67 16 18 C 0.05 2.14 5.14 85.35 0.44 2.58 16 19 N -0.79 -36.46 10.96 21.88 0.24 -36.22 16 20 Si 0.98 35.24 29.60 68.60 2.03 37.27 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 24 C -0.16 -7.28 8.16 22.94 0.19 -7.10 16 25 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 26 H 0.07 1.04 7.69 -2.39 -0.02 1.02 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.18 3.58 6.32 -2.91 -0.02 3.56 16 29 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.12 4.14 7.69 -2.91 -0.02 4.12 16 32 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.30 12.41 8.30 -92.71 -0.77 11.64 16 34 H 0.12 5.69 6.14 -2.91 -0.02 5.67 16 Total: -1.00 -59.74 307.83 6.27 -53.47 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.14 Total: 19.28 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 5.35 Total: -22.21 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -1.43 Total: -77.33 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.83 Total: -10.48 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -59.74 6.27 -53.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243072085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.511 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds