Wall clock time and date at job start Tue Mar 31 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46930 * 299.99950 * 3 2 1 6 6 H 1.48496 * 109.46950 * 60.00016 * 3 2 1 7 7 C 1.37878 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99957 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46830 * 175.83768 * 9 7 2 11 11 C 1.46902 * 111.00047 * 75.58337 * 10 9 7 12 12 C 1.50702 * 109.47110 * 189.99688 * 11 10 9 13 13 C 1.38714 * 120.78415 * 270.27427 * 12 11 10 14 14 C 1.38144 * 119.19383 * 180.25765 * 13 12 11 15 15 N 1.31914 * 120.77925 * 359.74092 * 14 13 12 16 16 C 1.31946 * 121.70864 * 359.97438 * 15 14 13 17 17 Cl 1.73596 * 119.63468 * 180.02562 * 16 15 14 18 18 C 1.38393 * 120.72946 * 359.97438 * 16 15 14 19 19 C 1.46898 * 110.99831 * 199.53484 * 10 9 7 20 20 C 1.53007 * 109.46875 * 71.30152 * 19 10 9 21 21 C 1.52995 * 117.50001 * 244.20643 * 20 19 10 22 22 C 1.52996 * 117.49717 * 175.54769 * 20 19 10 23 23 H 0.97006 * 120.00143 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47440 * 55.83774 * 9 7 2 25 25 H 1.08999 * 109.47251 * 295.83603 * 9 7 2 26 26 H 1.09002 * 109.46821 * 70.00014 * 11 10 9 27 27 H 1.08995 * 109.47134 * 310.00188 * 11 10 9 28 28 H 1.08001 * 120.40098 * 359.97438 * 13 12 11 29 29 H 1.07994 * 119.60869 * 179.76641 * 14 13 12 30 30 H 1.08006 * 120.42318 * 180.02562 * 18 16 15 31 31 H 1.09001 * 109.47473 * 191.30230 * 19 10 9 32 32 H 1.09000 * 109.47303 * 311.30669 * 19 10 9 33 33 H 1.08998 * 115.55079 * 29.88088 * 20 19 10 34 34 H 1.09006 * 117.49943 * 0.02562 * 21 20 19 35 35 H 1.09001 * 117.50113 * 145.01959 * 21 20 19 36 36 H 1.08999 * 117.50085 * 214.98318 * 22 20 19 37 37 H 1.09001 * 117.50101 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2023 -3.6139 -0.1017 11 6 2.8866 -3.8398 1.1785 12 6 4.0186 -4.8142 0.9779 13 6 3.8125 -6.1793 1.1125 14 6 4.8748 -7.0427 0.9266 15 7 6.0725 -6.5830 0.6196 16 6 6.3045 -5.2919 0.4779 17 17 7.9018 -4.7461 0.0724 18 6 5.2882 -4.3680 0.6480 19 6 1.5329 -4.8370 -0.5638 20 6 1.1642 -4.6894 -2.0415 21 6 -0.3226 -4.6908 -2.4022 22 6 0.5485 -5.9031 -2.7405 23 1 -0.4851 0.8401 0.0004 24 1 0.5692 -2.5251 -0.8506 25 1 0.6817 -2.5900 0.9246 26 1 2.1798 -4.2478 1.9011 27 1 3.2821 -2.8949 1.5507 28 1 2.8345 -6.5623 1.3641 29 1 4.7227 -8.1065 1.0334 30 1 5.4836 -3.3122 0.5304 31 1 2.2035 -5.6873 -0.4398 32 1 0.6280 -4.9995 0.0218 33 1 1.8241 -4.0513 -2.6291 34 1 -1.0383 -4.7964 -1.5868 35 1 -0.6409 -4.0537 -3.2274 36 1 0.8030 -6.0632 -3.7882 37 1 0.4056 -6.8066 -2.1477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:00 Heat of formation + Delta-G solvation = 53.926222 kcal Electronic energy + Delta-G solvation = -19392.832861 eV Core-core repulsion = 16389.691616 eV Total energy + Delta-G solvation = -3003.141245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25119 -37.87607 -36.58172 -35.70699 -33.11329 -32.06972 -30.97730 -27.71794 -27.22336 -24.26782 -23.45215 -22.25207 -21.89941 -20.87210 -19.66239 -16.83160 -16.67641 -16.38680 -15.73514 -15.39356 -14.93785 -14.46296 -14.24950 -14.07559 -13.83085 -13.49681 -12.90971 -12.22969 -12.08955 -11.95519 -11.65793 -11.37173 -11.24776 -11.21379 -11.15499 -10.82137 -10.72364 -10.69724 -10.12369 -9.91871 -9.63661 -9.56748 -9.40345 -9.17951 -8.88300 -8.46907 -7.42633 -6.06873 -4.08376 0.99829 1.24366 1.87876 3.28050 3.36296 3.40356 3.68427 4.16630 4.38999 4.49744 4.70817 4.83509 5.00677 5.11976 5.22227 5.22899 5.28729 5.30389 5.52452 5.61910 5.82909 5.85727 5.89406 5.92573 6.00584 6.15818 6.24168 6.25496 6.41786 6.44527 6.60425 6.73307 7.14610 7.25743 7.73939 7.74764 8.01469 8.07971 8.44441 8.98935 9.56128 11.03536 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.005879 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.665037 B = 4761.757705 C = 6406.780407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.526 5.526 11 C 0.094 3.906 12 C -0.004 4.004 13 C -0.169 4.169 14 C 0.112 3.888 15 N -0.489 5.489 16 C 0.172 3.828 17 Cl -0.041 7.041 18 C -0.131 4.131 19 C 0.079 3.921 20 C -0.129 4.129 21 C -0.177 4.177 22 C -0.189 4.189 23 H 0.261 0.739 24 H 0.043 0.957 25 H -0.011 1.011 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -12.468 0.828 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.250 5.250 11 C -0.034 4.034 12 C -0.013 4.013 13 C -0.190 4.190 14 C -0.045 4.045 15 N -0.201 5.201 16 C 0.008 3.992 17 Cl -0.012 7.012 18 C -0.152 4.152 19 C -0.049 4.049 20 C -0.147 4.147 21 C -0.214 4.214 22 C -0.227 4.227 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.007 0.993 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.092 -12.729 0.331 14.575 hybrid contribution -0.835 1.350 0.572 1.687 sum 6.257 -11.380 0.903 13.018 Atomic orbital electron populations 1.69960 1.06034 1.26674 1.51029 1.24965 0.94827 0.99235 0.95446 0.86497 0.80165 0.83583 0.77526 1.19605 1.21037 1.21140 1.21184 0.93519 0.89858 1.49958 0.91870 1.19816 0.90021 0.86901 0.96419 1.62152 1.32187 1.05075 1.25611 1.21053 0.92392 0.97684 0.92277 1.20528 0.94705 0.94340 0.91740 1.22182 1.00735 0.93735 1.02328 1.22522 0.86622 1.00190 0.95146 1.66933 1.24498 1.14887 1.13737 1.21595 0.87657 0.90280 0.99618 1.98390 1.23038 1.88043 1.91763 1.21810 0.91695 1.01379 1.00311 1.21734 0.96540 0.93637 0.93028 1.22211 0.95823 1.00116 0.96571 1.22974 0.94308 1.00729 1.03415 1.22944 1.06088 0.92835 1.00799 0.92979 0.93854 0.99274 0.94316 0.88249 0.84460 0.82209 0.83400 0.91542 0.95604 0.87092 0.89211 0.89117 0.89329 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.47 8.60 -34.44 -0.30 -13.76 16 8 H 0.06 1.66 7.66 -52.48 -0.40 1.26 16 9 C 0.19 4.68 4.59 -4.97 -0.02 4.65 16 10 N -0.53 -10.33 4.38 -237.51 -1.04 -11.37 16 11 C 0.09 1.60 4.99 -4.97 -0.02 1.58 16 12 C 0.00 -0.06 4.96 -104.32 -0.52 -0.58 16 13 C -0.17 -2.10 7.99 -39.44 -0.31 -2.42 16 14 C 0.11 1.35 11.18 -17.55 -0.20 1.15 16 15 N -0.49 -7.07 10.34 -10.36 -0.11 -7.18 16 16 C 0.17 2.54 7.27 -17.45 -0.13 2.41 16 17 Cl -0.04 -0.55 29.11 -51.86 -1.51 -2.06 16 18 C -0.13 -1.96 9.59 -39.40 -0.38 -2.34 16 19 C 0.08 1.33 5.08 -3.82 -0.02 1.31 16 20 C -0.13 -2.14 4.94 -90.62 -0.45 -2.58 16 21 C -0.18 -2.75 9.96 -26.70 -0.27 -3.01 16 22 C -0.19 -2.55 10.25 -26.70 -0.27 -2.82 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.04 1.14 6.91 -51.93 -0.36 0.78 16 25 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 26 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.10 1.84 7.28 -51.93 -0.38 1.46 16 28 H 0.14 1.43 7.75 -52.49 -0.41 1.02 16 29 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 31 H 0.07 1.00 5.18 -51.93 -0.27 0.73 16 32 H 0.03 0.44 7.80 -51.93 -0.40 0.03 16 33 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 34 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -28.79 326.54 -10.15 -38.94 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.14 Total: 0.74 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.98 Total: -14.97 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.41 Total: -43.59 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.79 -10.15 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.864 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds