Wall clock time and date at job start Tue Mar 31 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36072 * 124.87496 * 2 1 4 4 C 1.36015 * 109.79383 * 180.26683 * 3 2 1 5 5 C 1.47925 * 126.70516 * 179.97438 * 4 3 2 6 6 C 1.40272 * 120.00613 * 356.07165 * 5 4 3 7 7 N 1.32105 * 120.27521 * 179.97438 * 6 5 4 8 8 C 1.31936 * 120.31628 * 359.97438 * 7 6 5 9 9 C 1.40798 * 120.00240 * 359.97438 * 8 7 6 10 10 C 1.41269 * 120.13462 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00159 * 18.18660 * 10 9 8 12 12 C 1.40028 * 120.00135 * 198.19513 * 10 9 8 13 13 N 1.30751 * 119.99539 * 10.37509 * 12 10 9 14 14 Si 1.86795 * 120.00166 * 190.37916 * 12 10 9 15 15 H 1.48498 * 109.47240 * 89.99609 * 14 12 10 16 16 H 1.48500 * 109.47244 * 209.99775 * 14 12 10 17 17 H 1.48497 * 109.47289 * 329.99453 * 14 12 10 18 18 N 1.32651 * 120.00814 * 175.80055 * 5 4 3 19 19 C 1.46768 * 106.59313 * 359.97438 * 4 3 2 20 20 C 1.39577 * 135.19565 * 179.97438 * 19 4 3 21 21 C 1.36752 * 118.71969 * 180.02562 * 20 19 4 22 22 N 1.32252 * 121.25974 * 0.02562 * 21 20 19 23 23 C 1.31748 * 122.54113 * 359.97438 * 22 21 20 24 24 C 1.37701 * 124.86709 * 180.30557 * 2 1 3 25 25 H 1.09006 * 109.47096 * 269.69817 * 1 2 3 26 26 H 1.09005 * 109.47133 * 29.69258 * 1 2 3 27 27 H 1.08999 * 109.47833 * 149.69699 * 1 2 3 28 28 H 1.08005 * 125.10519 * 0.26589 * 3 2 1 29 29 H 1.07997 * 119.86029 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.00097 * 179.97438 * 8 7 6 31 31 H 0.97000 * 119.99774 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.64278 * 359.97438 * 20 19 4 33 33 H 1.07993 * 119.36794 * 179.97438 * 21 20 19 34 34 H 1.08001 * 119.85179 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2430 1.1163 0.0000 4 6 3.5563 0.7625 -0.0060 5 6 4.7186 1.6775 -0.0085 6 6 4.5197 3.0638 -0.0878 7 7 5.5538 3.8859 -0.0900 8 6 6.7825 3.4107 -0.0171 9 6 6.9964 2.0215 0.0641 10 6 8.3108 1.5097 0.1429 11 1 9.1255 2.1562 0.4338 12 6 8.5574 0.1642 -0.1564 13 7 7.6199 -0.5668 -0.7008 14 14 10.2255 -0.5863 0.2221 15 1 10.2140 -1.1514 1.5954 16 1 10.5158 -1.6662 -0.7551 17 1 11.2731 0.4619 0.1270 18 7 5.9488 1.1876 0.0697 19 6 3.5950 -0.7047 -0.0094 20 6 4.6044 -1.6687 -0.0160 21 6 4.2513 -2.9899 -0.0179 22 7 2.9819 -3.3610 -0.0141 23 6 1.9900 -2.4938 -0.0079 24 6 2.2522 -1.1298 -0.0060 25 1 -0.3633 -0.0054 1.0277 26 1 -0.3634 0.8928 -0.5091 27 1 -0.3635 -0.8872 -0.5185 28 1 1.8733 2.1311 0.0041 29 1 3.5171 3.4607 -0.1474 30 1 7.6242 4.0874 -0.0196 31 1 7.7906 -1.4990 -0.9078 32 1 5.6442 -1.3769 -0.0203 33 1 5.0237 -3.7445 -0.0234 34 1 0.9688 -2.8451 -0.0047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245487607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:34 Heat of formation + Delta-G solvation = 112.121411 kcal Electronic energy + Delta-G solvation = -20828.001974 eV Core-core repulsion = 17726.276768 eV Total energy + Delta-G solvation = -3101.725206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20556 -38.83305 -37.74067 -34.09600 -33.48175 -31.78381 -30.58064 -30.20798 -29.14323 -26.50122 -25.70150 -23.15485 -22.99122 -21.95229 -21.28415 -19.50579 -17.54331 -17.01427 -16.44562 -15.64479 -15.34447 -15.30018 -15.10818 -14.85614 -14.21977 -13.76586 -13.52852 -13.30197 -12.99302 -12.77068 -12.50182 -11.95685 -11.73787 -11.54343 -11.44419 -11.32237 -11.12892 -10.75636 -10.35596 -9.92086 -9.76085 -9.52946 -9.15839 -9.01515 -8.30876 -7.99792 -7.42637 -6.95786 -6.70104 -4.70259 1.37384 1.88936 2.20785 2.78679 2.92330 3.02497 3.04708 3.14931 3.49234 3.82530 4.43665 4.63059 4.70276 4.91405 4.94631 5.11838 5.15582 5.24685 5.34015 5.50019 5.72214 5.76499 5.88471 5.97644 6.09191 6.35379 6.49028 6.51514 6.76781 6.83927 6.96598 7.05573 7.15367 7.27320 7.43447 7.50084 7.59334 8.02629 8.39264 8.49361 8.60901 9.17864 9.75146 10.07851 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.006854 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.226777 B = 4083.963499 C = 5736.217627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.477 5.477 3 C 0.065 3.935 4 C -0.096 4.096 5 C 0.177 3.823 6 C -0.107 4.107 7 N -0.428 5.428 8 C -0.068 4.068 9 C 0.223 3.777 10 C -0.423 4.423 11 H 0.091 0.909 12 C 0.079 3.921 13 N -0.730 5.730 14 Si 0.912 3.088 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.452 5.452 19 C -0.046 4.046 20 C -0.088 4.088 21 C 0.028 3.972 22 N -0.471 5.471 23 C 0.090 3.910 24 C 0.030 3.970 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.174 0.826 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.280 0.720 32 H 0.177 0.823 33 H 0.148 0.852 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 -2.721 0.744 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.160 5.160 3 C -0.064 4.064 4 C -0.104 4.104 5 C 0.029 3.971 6 C -0.267 4.267 7 N -0.140 5.140 8 C -0.237 4.237 9 C 0.096 3.904 10 C -0.455 4.455 11 H 0.109 0.891 12 C -0.146 4.146 13 N -0.352 5.352 14 Si 0.736 3.264 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.169 5.169 19 C -0.058 4.058 20 C -0.107 4.107 21 C -0.122 4.122 22 N -0.180 5.180 23 C -0.078 4.078 24 C -0.077 4.077 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.191 0.809 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.091 0.909 32 H 0.194 0.806 33 H 0.166 0.834 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.097 -3.839 0.644 10.821 hybrid contribution 0.757 0.619 0.084 0.981 sum -9.340 -3.220 0.728 9.906 Atomic orbital electron populations 1.21925 0.77196 1.04104 1.02876 1.43427 1.05730 1.04011 1.62867 1.21848 0.89725 0.90934 1.03899 1.18748 0.90975 0.90465 1.10222 1.19839 0.91696 0.90321 0.95278 1.22399 0.96959 0.90129 1.17170 1.67622 0.99765 1.39295 1.07276 1.23223 0.93525 0.95044 1.11880 1.19298 0.93194 0.88860 0.89017 1.19535 0.92431 0.95000 1.38485 0.89070 1.26012 0.98829 0.97110 0.92652 1.69787 1.32994 1.07836 1.24593 0.86243 0.81535 0.79303 0.79330 1.19104 1.19993 1.18414 1.69332 0.96137 1.35966 1.15506 1.19234 0.91354 0.93325 1.01850 1.22202 1.03173 0.91581 0.93765 1.22054 0.92310 0.94965 1.02843 1.67423 1.00724 1.37641 1.12245 1.21500 0.98341 0.85297 1.02709 1.19433 0.91273 0.89716 1.07289 0.91345 0.89892 0.90164 0.80869 0.85784 0.84859 0.90871 0.80632 0.83423 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 11.02 59.84 0.66 1.36 16 2 N -0.48 -6.86 3.15 -121.53 -0.38 -7.24 16 3 C 0.07 1.05 10.71 -16.47 -0.18 0.87 16 4 C -0.10 -1.99 6.25 -103.28 -0.65 -2.64 16 5 C 0.18 4.24 6.76 -82.78 -0.56 3.68 16 6 C -0.11 -2.45 10.77 -16.67 -0.18 -2.63 16 7 N -0.43 -10.45 10.47 -12.01 -0.13 -10.58 16 8 C -0.07 -1.68 10.97 -16.54 -0.18 -1.86 16 9 C 0.22 5.89 6.40 -84.85 -0.54 5.34 16 10 C -0.42 -10.59 9.13 -37.76 -0.34 -10.94 16 11 H 0.09 2.11 7.87 -52.49 -0.41 1.70 16 12 C 0.08 1.87 5.42 -17.34 -0.09 1.78 16 13 N -0.73 -17.82 9.78 55.55 0.54 -17.28 16 14 Si 0.91 17.52 29.57 -169.99 -5.03 12.49 16 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 N -0.45 -11.91 7.44 -7.54 -0.06 -11.96 16 19 C -0.05 -0.96 6.31 -104.96 -0.66 -1.62 16 20 C -0.09 -1.84 9.88 -39.62 -0.39 -2.23 16 21 C 0.03 0.52 11.11 -17.91 -0.20 0.32 16 22 N -0.47 -8.44 10.32 -13.38 -0.14 -8.58 16 23 C 0.09 1.44 11.18 -17.34 -0.19 1.25 16 24 C 0.03 0.53 6.82 -84.00 -0.57 -0.05 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 28 H 0.17 2.17 7.25 -52.48 -0.38 1.79 16 29 H 0.12 2.38 7.01 -52.49 -0.37 2.01 16 30 H 0.13 2.99 8.06 -52.49 -0.42 2.57 16 31 H 0.28 6.18 8.29 -40.82 -0.34 5.85 16 32 H 0.18 4.06 5.20 -52.49 -0.27 3.78 16 33 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -30.81 298.97 -7.87 -38.68 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.10 Total: 7.35 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -4.08 Total: -7.38 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.16 Total: -55.65 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.81 -7.87 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245487607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.804 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds