Wall clock time and date at job start Tue Mar 31 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30538 * 119.69567 * 2 1 4 4 N 1.28268 * 122.99931 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.02754 * 179.97438 * 4 3 2 6 6 C 1.34684 * 121.94344 * 0.02562 * 4 3 2 7 7 O 1.21891 * 120.47242 * 179.97438 * 6 4 3 8 8 C 1.42369 * 119.05444 * 359.97438 * 6 4 3 9 9 C 1.47268 * 121.30268 * 179.97438 * 8 6 4 10 10 O 1.21531 * 119.99791 * 174.19767 * 9 8 6 11 11 O 1.34776 * 120.00127 * 354.20179 * 9 8 6 12 12 C 1.45196 * 117.00338 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47672 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99827 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00239 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99845 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46842 * 90.00095 * 18 16 14 20 20 H 1.48498 * 109.47466 * 210.00088 * 18 16 14 21 21 H 1.48505 * 109.47175 * 330.00382 * 18 16 14 22 22 C 1.39393 * 117.38775 * 0.25396 * 8 6 4 23 23 C 1.50703 * 120.99204 * 179.74950 * 22 8 6 24 24 H 1.08998 * 109.47560 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46957 * 120.00510 * 1 2 3 26 26 H 1.09001 * 109.46538 * 240.00308 * 1 2 3 27 27 H 1.08996 * 109.47032 * 270.02330 * 5 4 3 28 28 H 1.09000 * 109.46867 * 30.02375 * 5 4 3 29 29 H 1.08994 * 109.47124 * 150.01941 * 5 4 3 30 30 H 1.09006 * 109.47000 * 299.99895 * 12 11 9 31 31 H 1.09003 * 109.47254 * 59.99606 * 12 11 9 32 32 H 1.09006 * 109.46968 * 300.00093 * 13 12 11 33 33 H 1.09003 * 109.46957 * 59.99602 * 13 12 11 34 34 H 0.96999 * 120.00099 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47597 * 84.57561 * 23 22 8 36 36 H 1.09004 * 109.47080 * 204.58093 * 23 22 8 37 37 H 1.08999 * 109.47075 * 324.57639 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1339 0.0000 4 7 3.4343 1.2079 -0.0005 5 6 4.0701 2.5277 -0.0010 6 6 4.2115 0.1079 -0.0015 7 8 5.4262 0.2094 -0.0024 8 6 3.5942 -1.1749 -0.0016 9 6 4.3962 -2.4100 -0.0033 10 8 3.8491 -3.4900 0.1031 11 8 5.7370 -2.3427 -0.1227 12 6 6.4633 -3.6000 -0.1173 13 6 7.9612 -3.3244 -0.2622 14 6 8.7149 -4.6294 -0.2572 15 1 8.1791 -5.5620 -0.1598 16 6 10.0885 -4.6326 -0.3768 17 7 10.7410 -3.4969 -0.4949 18 14 11.0228 -6.2502 -0.3698 19 1 11.1489 -6.7550 -1.7607 20 1 12.3758 -6.0379 0.2042 21 1 10.2864 -7.2437 0.4524 22 6 2.2009 -1.2160 -0.0060 23 6 1.4633 -2.5302 -0.0120 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 -0.3632 -0.5138 0.8901 27 1 4.2271 2.8549 -1.0288 28 1 3.4264 3.2413 0.5133 29 1 5.0299 2.4688 0.5122 30 1 6.2787 -4.1221 0.8217 31 1 6.1258 -4.2182 -0.9491 32 1 8.1454 -2.8025 -1.2013 33 1 8.2990 -2.7060 0.5694 34 1 11.7072 -3.4992 -0.5794 35 1 1.3670 -2.8976 1.0097 36 1 0.4718 -2.3885 -0.4422 37 1 2.0176 -3.2552 -0.6080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044951082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:45 Heat of formation + Delta-G solvation = -61.816229 kcal Electronic energy + Delta-G solvation = -21692.569861 eV Core-core repulsion = 18243.700483 eV Total energy + Delta-G solvation = -3448.869379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25476 -39.75180 -38.12096 -36.52587 -35.61960 -33.26340 -32.51356 -30.92172 -30.12129 -28.33093 -26.67068 -25.54464 -24.32539 -22.43247 -21.26183 -20.62020 -19.07950 -17.46732 -17.01528 -16.75994 -16.22506 -15.91585 -15.77154 -15.41224 -14.46409 -14.38507 -14.11708 -13.70506 -13.44465 -13.18104 -13.03170 -12.86323 -12.79247 -12.60065 -12.32756 -12.26226 -12.21696 -11.49195 -11.15643 -10.98246 -10.67830 -10.64370 -10.24373 -10.11459 -9.78968 -9.54429 -9.50962 -9.21406 -8.58072 -8.37295 -6.02883 -4.07479 -0.08674 1.41392 1.99625 2.53107 3.09271 3.32544 3.38223 3.40307 3.42593 3.71758 4.21762 4.41244 4.41777 4.55683 4.94480 5.01892 5.03683 5.16059 5.20266 5.32975 5.35041 5.39636 5.42957 5.48574 5.60600 5.69242 5.84488 6.04776 6.16678 6.19526 6.72502 7.00774 7.53073 7.65377 7.74156 7.91363 7.94508 8.22258 8.32804 8.98405 9.56119 11.08593 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003773 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.655697 B = 7420.085579 C = 8347.380742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.043 3.957 3 N -0.198 5.198 4 N -0.348 5.348 5 C 0.080 3.920 6 C 0.489 3.511 7 O -0.480 6.480 8 C -0.210 4.210 9 C 0.519 3.481 10 O -0.511 6.511 11 O -0.325 6.325 12 C 0.074 3.926 13 C 0.026 3.974 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.045 3.955 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.236 10.741 1.025 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 N -0.025 5.025 4 N -0.170 5.170 5 C -0.060 4.060 6 C 0.285 3.715 7 O -0.352 6.352 8 C -0.223 4.223 9 C 0.364 3.636 10 O -0.403 6.403 11 O -0.239 6.239 12 C 0.001 3.999 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.039 3.961 23 C -0.189 4.189 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.407 11.490 1.037 25.203 hybrid contribution 0.922 -1.611 -0.018 1.857 sum -21.485 9.878 1.018 23.669 Atomic orbital electron populations 1.20548 0.85743 1.04408 1.03520 1.21635 0.98050 0.86430 1.06590 1.70559 0.95607 1.28996 1.07357 1.46756 1.01787 1.10241 1.58194 1.22193 0.99493 0.79682 1.04607 1.17836 0.88431 0.84658 0.80597 1.91102 1.11304 1.85100 1.47710 1.20687 0.93032 0.92817 1.15752 1.20051 0.82825 0.87052 0.73662 1.90760 1.72740 1.29721 1.47126 1.86817 1.17138 1.38909 1.81050 1.23696 0.94322 0.81038 1.00817 1.19147 0.85083 0.97974 0.98943 1.20988 0.91768 0.92111 1.51498 0.92276 1.24994 0.97608 0.96627 0.94993 1.69992 1.08132 1.25370 1.49229 0.86476 0.79106 0.83442 0.78288 1.20519 1.21087 1.19732 1.21661 0.92057 0.97725 0.84689 1.21294 0.99896 0.92732 1.04938 0.89968 0.89793 0.89793 0.89944 0.88708 0.87880 0.92282 0.92304 0.95334 0.95256 0.92766 0.88552 0.90377 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 8.95 36.01 0.32 -0.09 16 2 C 0.04 0.41 6.87 -82.48 -0.57 -0.16 16 3 N -0.20 -2.15 10.74 33.65 0.36 -1.79 16 4 N -0.35 -4.43 3.62 -69.81 -0.25 -4.68 16 5 C 0.08 0.73 10.58 59.85 0.63 1.36 16 6 C 0.49 8.22 7.50 -14.71 -0.11 8.11 16 7 O -0.48 -9.93 14.93 -15.62 -0.23 -10.16 16 8 C -0.21 -3.42 5.95 -104.21 -0.62 -4.04 16 9 C 0.52 10.26 7.84 34.40 0.27 10.53 16 10 O -0.51 -10.00 13.39 -19.29 -0.26 -10.26 16 11 O -0.32 -7.55 8.58 -47.66 -0.41 -7.96 16 12 C 0.07 1.78 5.41 37.16 0.20 1.98 16 13 C 0.03 0.72 5.35 -27.88 -0.15 0.57 16 14 C -0.53 -15.43 9.11 -34.44 -0.31 -15.74 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 18 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 C 0.05 0.53 5.99 -103.53 -0.62 -0.09 16 23 C -0.13 -1.25 8.61 36.01 0.31 -0.94 16 24 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 25 H 0.08 0.30 7.56 -51.93 -0.39 -0.09 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.03 7.36 -51.93 -0.38 0.65 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.45 6.61 -51.93 -0.34 0.11 16 37 H 0.11 1.29 5.95 -51.93 -0.31 0.98 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -36.15 319.80 -5.77 -41.92 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -4.77 Total: -5.34 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.74 Total: 3.16 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.85 Total: -33.19 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.90 Total: -28.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.15 -5.77 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044951082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.897 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds