Wall clock time and date at job start Tue Mar 31 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30538 * 119.69567 * 2 1 4 4 N 1.28268 * 122.99931 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.02754 * 179.97438 * 4 3 2 6 6 C 1.34684 * 121.94344 * 0.02562 * 4 3 2 7 7 O 1.21891 * 120.47242 * 179.97438 * 6 4 3 8 8 C 1.42369 * 119.05444 * 359.97438 * 6 4 3 9 9 C 1.47268 * 121.30268 * 179.97438 * 8 6 4 10 10 O 1.21531 * 119.99791 * 174.19767 * 9 8 6 11 11 O 1.34776 * 120.00127 * 354.20179 * 9 8 6 12 12 C 1.45196 * 117.00338 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47672 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99827 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00239 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99845 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46842 * 90.00095 * 18 16 14 20 20 H 1.48498 * 109.47466 * 210.00088 * 18 16 14 21 21 H 1.48505 * 109.47175 * 330.00382 * 18 16 14 22 22 C 1.39393 * 117.38775 * 0.25396 * 8 6 4 23 23 C 1.50703 * 120.99204 * 179.74950 * 22 8 6 24 24 H 1.08998 * 109.47560 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46957 * 120.00510 * 1 2 3 26 26 H 1.09001 * 109.46538 * 240.00308 * 1 2 3 27 27 H 1.08996 * 109.47032 * 270.02330 * 5 4 3 28 28 H 1.09000 * 109.46867 * 30.02375 * 5 4 3 29 29 H 1.08994 * 109.47124 * 150.01941 * 5 4 3 30 30 H 1.09006 * 109.47000 * 299.99895 * 12 11 9 31 31 H 1.09003 * 109.47254 * 59.99606 * 12 11 9 32 32 H 1.09006 * 109.46968 * 300.00093 * 13 12 11 33 33 H 1.09003 * 109.46957 * 59.99602 * 13 12 11 34 34 H 0.96999 * 120.00099 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47597 * 84.57561 * 23 22 8 36 36 H 1.09004 * 109.47080 * 204.58093 * 23 22 8 37 37 H 1.08999 * 109.47075 * 324.57639 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1339 0.0000 4 7 3.4343 1.2079 -0.0005 5 6 4.0701 2.5277 -0.0010 6 6 4.2115 0.1079 -0.0015 7 8 5.4262 0.2094 -0.0024 8 6 3.5942 -1.1749 -0.0016 9 6 4.3962 -2.4100 -0.0033 10 8 3.8491 -3.4900 0.1031 11 8 5.7370 -2.3427 -0.1227 12 6 6.4633 -3.6000 -0.1173 13 6 7.9612 -3.3244 -0.2622 14 6 8.7149 -4.6294 -0.2572 15 1 8.1791 -5.5620 -0.1598 16 6 10.0885 -4.6326 -0.3768 17 7 10.7410 -3.4969 -0.4949 18 14 11.0228 -6.2502 -0.3698 19 1 11.1489 -6.7550 -1.7607 20 1 12.3758 -6.0379 0.2042 21 1 10.2864 -7.2437 0.4524 22 6 2.2009 -1.2160 -0.0060 23 6 1.4633 -2.5302 -0.0120 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 -0.3632 -0.5138 0.8901 27 1 4.2271 2.8549 -1.0288 28 1 3.4264 3.2413 0.5133 29 1 5.0299 2.4688 0.5122 30 1 6.2787 -4.1221 0.8217 31 1 6.1258 -4.2182 -0.9491 32 1 8.1454 -2.8025 -1.2013 33 1 8.2990 -2.7060 0.5694 34 1 11.7072 -3.4992 -0.5794 35 1 1.3670 -2.8976 1.0097 36 1 0.4718 -2.3885 -0.4422 37 1 2.0176 -3.2552 -0.6080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044951082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:45 Heat of formation + Delta-G solvation = -86.233900 kcal Electronic energy + Delta-G solvation = -21693.628691 eV Core-core repulsion = 18243.700483 eV Total energy + Delta-G solvation = -3449.928208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30802 -41.30886 -39.29637 -38.00916 -36.82278 -35.48231 -33.53129 -32.44045 -31.56550 -29.16094 -27.79493 -27.07050 -25.78413 -23.44794 -23.07750 -22.26956 -20.32248 -18.75960 -18.46800 -18.11731 -17.76817 -17.43428 -17.38169 -16.74446 -16.46262 -15.33037 -15.02427 -14.94417 -14.56275 -14.47981 -14.42712 -14.15582 -13.83996 -13.69993 -13.46292 -13.14137 -13.06065 -12.90617 -12.86421 -12.60703 -12.57311 -12.53299 -11.83898 -11.54349 -11.51657 -11.41517 -11.06974 -10.90040 -10.65139 -9.66167 -8.29031 -6.44539 -1.16816 0.39249 1.03357 1.15655 1.38093 1.42246 1.52858 1.64017 2.21268 2.37826 2.75730 3.04364 3.23624 3.38396 3.56139 3.99008 4.16142 4.17301 4.25163 4.28294 4.32735 4.43226 4.63219 4.66639 4.67532 4.75776 4.83711 4.95821 5.04474 5.09140 5.26919 5.38854 5.41026 5.52793 5.69719 6.01053 6.38914 6.60071 6.69857 6.92627 7.25588 8.84324 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003773 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.655697 B = 7420.085579 C = 8347.380742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.052 3.948 3 N -0.192 5.192 4 N -0.345 5.345 5 C 0.074 3.926 6 C 0.481 3.519 7 O -0.542 6.542 8 C -0.264 4.264 9 C 0.514 3.486 10 O -0.516 6.516 11 O -0.351 6.351 12 C 0.089 3.911 13 C 0.033 3.967 14 C -0.550 4.550 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.259 1.259 22 C 0.084 3.916 23 C -0.134 4.134 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.066 0.934 32 H -0.002 1.002 33 H -0.003 1.003 34 H 0.268 0.732 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.673 10.104 1.115 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 N -0.018 5.018 4 N -0.165 5.165 5 C -0.065 4.065 6 C 0.279 3.721 7 O -0.420 6.420 8 C -0.276 4.276 9 C 0.361 3.639 10 O -0.409 6.409 11 O -0.267 6.267 12 C 0.016 3.984 13 C -0.004 4.004 14 C -0.588 4.588 15 H 0.089 0.911 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.183 1.183 22 C 0.076 3.924 23 C -0.190 4.190 24 H 0.113 0.887 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.148 0.852 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.918 10.885 1.127 28.134 hybrid contribution 1.722 -1.303 -0.045 2.160 sum -24.196 9.582 1.081 26.047 Atomic orbital electron populations 1.20862 0.81429 1.06186 1.05829 1.22549 1.00279 0.84884 1.03989 1.70759 0.94224 1.29471 1.07395 1.46886 1.02321 1.10232 1.57077 1.22458 0.99535 0.78703 1.05783 1.18037 0.88016 0.85905 0.80153 1.91059 1.13633 1.86054 1.51285 1.20550 0.94589 0.91176 1.21291 1.20595 0.81577 0.88623 0.73110 1.90737 1.72294 1.30190 1.47639 1.86808 1.19619 1.38049 1.82177 1.23230 0.92123 0.81758 1.01249 1.18946 0.88299 0.97250 0.95932 1.21374 0.92674 0.92600 1.52108 0.91107 1.26118 0.98637 1.01116 0.93891 1.70145 1.08774 1.28307 1.49732 0.85197 0.77373 0.77978 0.78951 1.19285 1.20353 1.18307 1.22150 0.90186 1.00025 0.80022 1.21459 1.01568 0.90485 1.05481 0.88654 0.87288 0.87333 0.88690 0.85233 0.89450 0.91764 0.91563 0.98399 0.98487 0.92310 0.87220 0.85383 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 8.95 71.24 0.64 0.28 16 2 C 0.05 0.81 6.87 43.18 0.30 1.10 16 3 N -0.19 -3.68 10.74 -47.44 -0.51 -4.19 16 4 N -0.34 -8.67 3.62 -492.98 -1.78 -10.45 16 5 C 0.07 1.33 10.58 127.77 1.35 2.68 16 6 C 0.48 16.96 7.50 85.28 0.64 17.60 16 7 O -0.54 -24.48 14.93 14.77 0.22 -24.26 16 8 C -0.26 -8.80 5.95 -19.60 -0.12 -8.91 16 9 C 0.51 21.26 7.84 70.20 0.55 21.81 16 10 O -0.52 -20.55 13.39 19.73 0.26 -20.29 16 11 O -0.35 -17.50 8.58 -50.21 -0.43 -17.94 16 12 C 0.09 4.55 5.41 71.98 0.39 4.94 16 13 C 0.03 1.99 5.35 29.85 0.16 2.15 16 14 C -0.55 -33.28 9.11 25.60 0.23 -33.04 16 15 H 0.07 4.02 7.74 -2.91 -0.02 4.00 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -59.39 13.29 21.45 0.28 -59.10 16 18 Si 0.98 45.49 29.54 68.60 2.03 47.52 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 C 0.08 1.80 5.99 -19.16 -0.11 1.69 16 23 C -0.13 -2.09 8.61 71.24 0.61 -1.47 16 24 H 0.09 0.27 8.10 -2.39 -0.02 0.25 16 25 H 0.11 0.04 7.56 -2.39 -0.02 0.02 16 26 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.88 7.36 -2.39 -0.02 1.86 16 30 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 31 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.13 0.74 6.61 -2.39 -0.02 0.72 16 37 H 0.08 1.82 5.95 -2.39 -0.01 1.81 16 Total: -1.00 -85.20 319.80 6.26 -78.94 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.09 Total: 0.44 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.10 Total: 9.33 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.01 Total: -73.74 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: 0.05 Total: -62.48 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -85.20 6.26 -78.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044951082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.296 kcal (2) G-P(sol) polarization free energy of solvation -85.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds