Wall clock time and date at job start Tue Mar 31 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47432 * 2 1 4 4 N 1.34274 * 125.79758 * 265.29341 * 3 2 1 5 5 H 0.96996 * 125.38119 * 359.97438 * 4 3 2 6 6 C 1.37798 * 109.22979 * 180.14794 * 4 3 2 7 7 C 1.46690 * 125.84821 * 179.85340 * 6 4 3 8 8 O 1.21725 * 119.99975 * 179.69275 * 7 6 4 9 9 N 1.34774 * 120.00036 * 359.69646 * 7 6 4 10 10 C 1.36872 * 120.00175 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99869 * 359.72486 * 10 9 7 12 12 C 1.39015 * 120.00276 * 180.02562 * 10 9 7 13 13 N 1.31386 * 119.99551 * 359.72055 * 12 10 9 14 14 Si 1.86798 * 119.99960 * 179.72699 * 12 10 9 15 15 H 1.48498 * 109.47416 * 59.99634 * 14 12 10 16 16 H 1.48508 * 109.46609 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99219 * 14 12 10 18 18 C 1.36443 * 108.30446 * 359.59445 * 6 4 3 19 19 C 1.50701 * 126.50101 * 180.21784 * 18 6 4 20 20 C 1.38304 * 125.80562 * 84.99392 * 3 2 1 21 21 C 1.47253 * 126.46174 * 0.02562 * 20 3 2 22 22 O 1.21530 * 119.99883 * 270.01698 * 21 20 3 23 23 O 1.34760 * 120.00372 * 90.02447 * 21 20 3 24 24 C 1.45200 * 117.00547 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.46869 * 300.00330 * 1 2 3 26 26 H 1.09001 * 109.47082 * 60.00297 * 1 2 3 27 27 H 1.08999 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47695 * 239.99776 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99703 * 2 1 3 30 30 H 0.96998 * 119.99534 * 0.02562 * 9 7 6 31 31 H 0.97000 * 120.00074 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47333 * 90.02552 * 19 18 6 33 33 H 1.09002 * 109.47034 * 210.02902 * 19 18 6 34 34 H 1.09004 * 109.47421 * 330.02157 * 19 18 6 35 35 H 1.08995 * 109.47122 * 59.99620 * 24 23 21 36 36 H 1.08993 * 109.47324 * 180.02562 * 24 23 21 37 37 H 1.09005 * 109.47060 * 300.00063 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3785 2.1315 -1.0854 5 1 2.3455 1.8112 -2.0004 6 6 2.7916 3.3863 -0.6935 7 6 3.2522 4.4564 -1.5849 8 8 3.5887 5.5310 -1.1225 9 7 3.3028 4.2499 -2.9157 10 6 3.7321 5.2485 -3.7475 11 1 4.0261 6.2036 -3.3377 12 6 3.7837 5.0357 -5.1203 13 7 3.4257 3.8740 -5.6188 14 14 4.3624 6.4012 -6.2560 15 1 5.7519 6.7857 -5.9000 16 1 4.3260 5.9243 -7.6620 17 1 3.4697 7.5788 -6.1090 18 6 2.6933 3.4650 0.6651 19 6 3.0357 4.6570 1.5211 20 6 2.2099 2.2163 1.1174 21 6 1.9455 1.8341 2.5146 22 8 0.8476 2.0253 2.9996 23 8 2.9208 1.2724 3.2558 24 6 2.5893 0.9218 4.6252 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0342 3.3937 -3.2841 31 1 3.4620 3.7253 -6.5766 32 1 2.1531 5.2858 1.6383 33 1 3.3719 4.3165 2.5005 34 1 3.8300 5.2310 1.0438 35 1 1.7691 0.2039 4.6280 36 1 3.4608 0.4802 5.1084 37 1 2.2890 1.8185 5.1674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:43 Heat of formation + Delta-G solvation = -96.050455 kcal Electronic energy + Delta-G solvation = -21845.514936 eV Core-core repulsion = 18395.161050 eV Total energy + Delta-G solvation = -3450.353886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38457 -39.82054 -37.85029 -36.20407 -34.34101 -33.72596 -32.42027 -31.23642 -29.36972 -27.58947 -26.74677 -25.13109 -23.92343 -22.78708 -20.53044 -19.65777 -18.86191 -18.17772 -17.45564 -17.08962 -16.20835 -15.85032 -15.18273 -14.77965 -14.58719 -14.28030 -13.94939 -13.62805 -13.43141 -13.18736 -12.97483 -12.65404 -12.54102 -12.17435 -12.13649 -11.94708 -11.72690 -11.66684 -11.28208 -11.16557 -10.95971 -10.73420 -10.54816 -10.49733 -10.36257 -9.68820 -8.65624 -8.55453 -8.18584 -7.73248 -6.61101 -3.97233 1.95481 2.28049 2.42722 3.01383 3.16928 3.18016 3.22308 3.43558 4.04717 4.23068 4.66821 4.78618 4.91754 5.05452 5.11350 5.15314 5.19202 5.20979 5.39548 5.46826 5.56525 5.63703 5.73928 5.84823 6.04594 6.15184 6.16718 6.26123 6.36009 6.48595 6.71099 6.95222 7.18348 7.38816 7.59306 7.89188 7.90467 8.40858 8.98662 9.30982 9.82669 10.56283 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.004276 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.906445 B = 6545.849815 C = 7296.747286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.061 4.061 3 C 0.086 3.914 4 N -0.522 5.522 5 H 0.422 0.578 6 C -0.005 4.005 7 C 0.502 3.498 8 O -0.576 6.576 9 N -0.551 5.551 10 C -0.298 4.298 11 H 0.109 0.891 12 C 0.025 3.975 13 N -0.897 5.897 14 Si 0.936 3.064 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.062 4.062 19 C -0.086 4.086 20 C -0.212 4.212 21 C 0.555 3.445 22 O -0.504 6.504 23 O -0.353 6.353 24 C 0.033 3.967 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.387 0.613 31 H 0.276 0.724 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -10.359 11.326 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.036 4.036 4 N -0.117 5.117 5 H 0.260 0.740 6 C -0.117 4.117 7 C 0.289 3.711 8 O -0.460 6.460 9 N -0.185 5.185 10 C -0.428 4.428 11 H 0.127 0.873 12 C -0.178 4.178 13 N -0.537 5.537 14 Si 0.762 3.238 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.069 4.069 19 C -0.143 4.143 20 C -0.221 4.221 21 C 0.398 3.602 22 O -0.391 6.391 23 O -0.269 6.269 24 C -0.061 4.061 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.770 -9.632 11.404 15.182 hybrid contribution -0.051 -0.207 -1.153 1.173 sum -2.821 -9.839 10.250 14.485 Atomic orbital electron populations 1.21796 0.93927 1.01985 1.03127 1.20220 0.96652 0.89287 1.03780 1.20298 1.03448 0.94330 0.85493 1.41678 1.49601 1.11675 1.08766 0.73957 1.20481 1.10688 0.86097 0.94443 1.16599 0.85866 0.86713 0.81960 1.90647 1.55033 1.25218 1.75131 1.41772 1.56692 1.15524 1.04487 1.19738 1.40207 0.95457 0.87379 0.87328 1.25344 0.97078 0.97850 0.97555 1.69565 1.46966 1.22800 1.14383 0.85829 0.79536 0.80204 0.78219 1.19629 1.20840 1.19643 1.19326 1.01550 0.94340 0.91678 1.20322 1.02786 0.94389 0.96790 1.18100 1.18817 0.96703 0.88435 1.20421 0.81564 0.72516 0.85726 1.90814 1.24590 1.50771 1.72960 1.86719 1.42291 1.72462 1.25457 1.23247 1.02301 1.00911 0.79626 0.91730 0.92279 0.91969 0.90235 0.89701 0.77987 0.91452 0.91662 0.93138 0.88986 0.92081 0.88275 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.68 6.25 -27.88 -0.17 -0.86 16 3 C 0.09 1.29 6.46 -81.50 -0.53 0.77 16 4 N -0.52 -8.49 5.91 -5.60 -0.03 -8.52 16 5 H 0.42 5.97 8.13 -40.82 -0.33 5.64 16 6 C 0.00 -0.09 6.99 -82.42 -0.58 -0.67 16 7 C 0.50 12.09 7.74 -12.85 -0.10 11.99 16 8 O -0.58 -15.43 14.27 5.17 0.07 -15.36 16 9 N -0.55 -13.59 5.27 -12.17 -0.06 -13.65 16 10 C -0.30 -8.02 9.68 -15.01 -0.15 -8.16 16 11 H 0.11 3.04 7.15 -52.48 -0.38 2.66 16 12 C 0.02 0.63 5.50 -17.45 -0.10 0.53 16 13 N -0.90 -23.16 13.05 55.50 0.72 -22.43 16 14 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C -0.06 -1.19 6.21 -104.09 -0.65 -1.84 16 19 C -0.09 -1.56 9.63 36.01 0.35 -1.22 16 20 C -0.21 -3.66 6.01 -105.03 -0.63 -4.30 16 21 C 0.55 9.03 7.23 34.39 0.25 9.28 16 22 O -0.50 -8.99 16.90 -19.29 -0.33 -9.31 16 23 O -0.35 -4.96 10.58 -40.65 -0.43 -5.39 16 24 C 0.03 0.32 10.57 101.05 1.07 1.39 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.39 8.90 6.97 -40.82 -0.28 8.62 16 31 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.80 8.05 -51.93 -0.42 0.39 16 34 H 0.09 1.83 6.41 -51.93 -0.33 1.49 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -31.67 327.20 -5.69 -37.36 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.68 Total: 11.52 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.86 Total: 5.67 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.63 Total: -44.61 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.68 Total: -30.07 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.67 -5.69 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.694 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds