Wall clock time and date at job start Tue Mar 31 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47432 * 2 1 4 4 N 1.34274 * 125.79758 * 265.29341 * 3 2 1 5 5 H 0.96996 * 125.38119 * 359.97438 * 4 3 2 6 6 C 1.37798 * 109.22979 * 180.14794 * 4 3 2 7 7 C 1.46690 * 125.84821 * 179.85340 * 6 4 3 8 8 O 1.21725 * 119.99975 * 179.69275 * 7 6 4 9 9 N 1.34774 * 120.00036 * 359.69646 * 7 6 4 10 10 C 1.36872 * 120.00175 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99869 * 359.72486 * 10 9 7 12 12 C 1.39015 * 120.00276 * 180.02562 * 10 9 7 13 13 N 1.31386 * 119.99551 * 359.72055 * 12 10 9 14 14 Si 1.86798 * 119.99960 * 179.72699 * 12 10 9 15 15 H 1.48498 * 109.47416 * 59.99634 * 14 12 10 16 16 H 1.48508 * 109.46609 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99219 * 14 12 10 18 18 C 1.36443 * 108.30446 * 359.59445 * 6 4 3 19 19 C 1.50701 * 126.50101 * 180.21784 * 18 6 4 20 20 C 1.38304 * 125.80562 * 84.99392 * 3 2 1 21 21 C 1.47253 * 126.46174 * 0.02562 * 20 3 2 22 22 O 1.21530 * 119.99883 * 270.01698 * 21 20 3 23 23 O 1.34760 * 120.00372 * 90.02447 * 21 20 3 24 24 C 1.45200 * 117.00547 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.46869 * 300.00330 * 1 2 3 26 26 H 1.09001 * 109.47082 * 60.00297 * 1 2 3 27 27 H 1.08999 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47695 * 239.99776 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99703 * 2 1 3 30 30 H 0.96998 * 119.99534 * 0.02562 * 9 7 6 31 31 H 0.97000 * 120.00074 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47333 * 90.02552 * 19 18 6 33 33 H 1.09002 * 109.47034 * 210.02902 * 19 18 6 34 34 H 1.09004 * 109.47421 * 330.02157 * 19 18 6 35 35 H 1.08995 * 109.47122 * 59.99620 * 24 23 21 36 36 H 1.08993 * 109.47324 * 180.02562 * 24 23 21 37 37 H 1.09005 * 109.47060 * 300.00063 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3785 2.1315 -1.0854 5 1 2.3455 1.8112 -2.0004 6 6 2.7916 3.3863 -0.6935 7 6 3.2522 4.4564 -1.5849 8 8 3.5887 5.5310 -1.1225 9 7 3.3028 4.2499 -2.9157 10 6 3.7321 5.2485 -3.7475 11 1 4.0261 6.2036 -3.3377 12 6 3.7837 5.0357 -5.1203 13 7 3.4257 3.8740 -5.6188 14 14 4.3624 6.4012 -6.2560 15 1 5.7519 6.7857 -5.9000 16 1 4.3260 5.9243 -7.6620 17 1 3.4697 7.5788 -6.1090 18 6 2.6933 3.4650 0.6651 19 6 3.0357 4.6570 1.5211 20 6 2.2099 2.2163 1.1174 21 6 1.9455 1.8341 2.5146 22 8 0.8476 2.0253 2.9996 23 8 2.9208 1.2724 3.2558 24 6 2.5893 0.9218 4.6252 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0342 3.3937 -3.2841 31 1 3.4620 3.7253 -6.5766 32 1 2.1531 5.2858 1.6383 33 1 3.3719 4.3165 2.5005 34 1 3.8300 5.2310 1.0438 35 1 1.7691 0.2039 4.6280 36 1 3.4608 0.4802 5.1084 37 1 2.2890 1.8185 5.1674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058224339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:43 Heat of formation + Delta-G solvation = -116.834648 kcal Electronic energy + Delta-G solvation = -21846.416207 eV Core-core repulsion = 18395.161050 eV Total energy + Delta-G solvation = -3451.255156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.77037 -41.04537 -39.70496 -37.37663 -36.22638 -34.87860 -33.94244 -33.06639 -30.64609 -28.65284 -28.21051 -26.85534 -25.05456 -24.14877 -22.01238 -20.89911 -20.54945 -19.90062 -19.03680 -18.33072 -17.39400 -17.02462 -16.87798 -16.32355 -16.10370 -15.87374 -15.21594 -14.98151 -14.74482 -14.58766 -14.37828 -14.03354 -13.92870 -13.53888 -13.48497 -13.18268 -12.99751 -12.93633 -12.90498 -12.50639 -12.30523 -12.13774 -11.96301 -11.75769 -11.74990 -11.60728 -10.58165 -10.15298 -9.94659 -9.18953 -8.56479 -6.01630 0.49790 1.02732 1.07732 1.42030 1.45380 1.52492 1.79433 2.14147 2.27124 2.40567 3.05943 3.22272 3.57399 3.90478 3.95896 4.15031 4.23608 4.32167 4.35174 4.38241 4.45614 4.59716 4.70904 4.75150 4.77887 4.87820 4.97678 5.05898 5.17501 5.30297 5.33648 5.37031 5.54241 5.67470 5.95329 6.32222 6.47862 6.70784 7.00318 7.38153 7.91880 8.60631 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.004276 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.906445 B = 6545.849815 C = 7296.747286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C 0.119 3.881 4 N -0.512 5.512 5 H 0.432 0.568 6 C -0.041 4.041 7 C 0.503 3.497 8 O -0.612 6.612 9 N -0.556 5.556 10 C -0.336 4.336 11 H 0.086 0.914 12 C -0.007 4.007 13 N -0.913 5.913 14 Si 0.997 3.003 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.064 4.064 19 C -0.083 4.083 20 C -0.238 4.238 21 C 0.562 3.438 22 O -0.525 6.525 23 O -0.357 6.357 24 C 0.024 3.976 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.393 0.607 31 H 0.282 0.718 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -12.543 11.606 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.005 4.005 4 N -0.107 5.107 5 H 0.272 0.728 6 C -0.153 4.153 7 C 0.291 3.709 8 O -0.499 6.499 9 N -0.191 5.191 10 C -0.466 4.466 11 H 0.104 0.896 12 C -0.208 4.208 13 N -0.553 5.553 14 Si 0.819 3.181 15 H -0.195 1.195 16 H -0.193 1.193 17 H -0.196 1.196 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.246 4.246 21 C 0.406 3.594 22 O -0.414 6.414 23 O -0.273 6.273 24 C -0.069 4.069 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.227 0.773 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.020 -11.849 11.673 16.905 hybrid contribution -0.001 0.345 -1.073 1.128 sum -3.021 -11.503 10.600 15.931 Atomic orbital electron populations 1.21770 0.93245 1.03563 1.01909 1.20486 0.97003 0.86503 1.06002 1.21050 0.99661 0.95525 0.84228 1.41605 1.48978 1.10452 1.09712 0.72793 1.19844 1.14245 0.87113 0.94069 1.17106 0.84534 0.87165 0.82055 1.90605 1.56343 1.27116 1.75849 1.41720 1.57286 1.15475 1.04632 1.19717 1.42707 0.95594 0.88555 0.89562 1.26094 0.96515 1.00073 0.98121 1.69612 1.46839 1.23800 1.15007 0.84932 0.78875 0.77485 0.76761 1.19497 1.19299 1.19624 1.19604 1.00660 0.95354 0.91601 1.20283 1.02058 0.94135 0.97570 1.18292 1.19924 0.96322 0.90021 1.20155 0.81516 0.72340 0.85400 1.90804 1.25469 1.51820 1.73285 1.86691 1.41503 1.71774 1.27306 1.23641 1.04450 1.01350 0.77414 0.93745 0.92713 0.89042 0.87359 0.88130 0.77270 0.90861 0.91661 0.90970 0.91150 0.91153 0.84875 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.89 71.98 0.71 -2.00 16 2 C -0.06 -1.17 6.25 29.85 0.19 -0.98 16 3 C 0.12 3.36 6.46 42.20 0.27 3.64 16 4 N -0.51 -16.23 5.91 -171.62 -1.01 -17.25 16 5 H 0.43 11.78 8.13 -92.71 -0.75 11.03 16 6 C -0.04 -1.68 6.99 40.00 0.28 -1.40 16 7 C 0.50 25.20 7.74 86.45 0.67 25.87 16 8 O -0.61 -34.51 14.27 -4.43 -0.06 -34.58 16 9 N -0.56 -28.39 5.27 -310.61 -1.64 -30.03 16 10 C -0.34 -18.69 9.68 84.09 0.81 -17.87 16 11 H 0.09 5.08 7.15 -2.91 -0.02 5.06 16 12 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 13 N -0.91 -46.93 13.05 21.68 0.28 -46.65 16 14 Si 1.00 41.42 29.55 68.60 2.03 43.44 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 18 C -0.06 -2.51 6.21 -19.52 -0.12 -2.63 16 19 C -0.08 -3.10 9.63 71.24 0.69 -2.42 16 20 C -0.24 -7.96 6.01 -20.13 -0.12 -8.08 16 21 C 0.56 17.44 7.23 70.19 0.51 17.94 16 22 O -0.52 -18.05 16.90 19.74 0.33 -17.72 16 23 O -0.36 -9.23 10.58 -56.70 -0.60 -9.83 16 24 C 0.02 0.41 10.57 113.37 1.20 1.61 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.68 8.05 -2.39 -0.02 1.66 16 30 H 0.39 18.51 6.97 -92.71 -0.65 17.86 16 31 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.29 8.05 -2.39 -0.02 2.28 16 34 H 0.07 2.92 6.41 -2.39 -0.02 2.91 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -70.09 327.20 4.60 -65.49 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.28 Total: 33.34 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.55 Total: 13.78 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -2.37 Total: -93.92 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -0.33 Total: -62.13 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.09 4.60 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.346 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds