Wall clock time and date at job start Tue Mar 31 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48497 * 109.47351 * 270.00633 * 3 2 1 5 5 H 1.48501 * 109.46943 * 30.00376 * 3 2 1 6 6 H 1.48495 * 109.46956 * 150.00118 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99915 * 170.00172 * 10 9 7 12 12 C 1.53235 * 109.34089 * 187.25745 * 11 10 9 13 13 N 1.47078 * 108.51875 * 306.16805 * 12 11 10 14 14 C 1.34777 * 120.88364 * 231.18486 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 F 1.39895 * 109.47411 * 59.99903 * 17 16 14 19 19 F 1.39898 * 109.46890 * 180.02562 * 17 16 14 20 20 F 1.39904 * 109.47059 * 299.99645 * 17 16 14 21 21 C 1.47083 * 118.23673 * 51.46281 * 13 12 11 22 22 C 1.46894 * 111.00366 * 294.30322 * 10 9 7 23 23 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47014 * 60.00085 * 9 7 2 25 25 H 1.09003 * 109.47023 * 300.00816 * 9 7 2 26 26 H 1.08996 * 109.49284 * 67.29670 * 11 10 9 27 27 H 1.09005 * 109.49020 * 307.22016 * 11 10 9 28 28 H 1.09004 * 109.62945 * 186.46254 * 12 11 10 29 29 H 1.08995 * 109.62961 * 65.87639 * 12 11 10 30 30 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 31 31 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 32 32 H 1.08995 * 109.63429 * 68.24707 * 21 13 12 33 33 H 1.09000 * 109.62775 * 188.83040 * 21 13 12 34 34 H 1.08997 * 109.49334 * 292.70971 * 22 10 9 35 35 H 1.09002 * 109.49100 * 52.78622 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4105 13 7 3.4618 -5.9861 -0.7543 14 6 3.7122 -7.1122 -1.4512 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 6 4.7471 -8.4724 -3.2479 18 9 3.4808 -8.9061 -3.6549 19 9 5.6050 -8.4353 -4.3523 20 9 5.2575 -9.3561 -2.2909 21 6 4.0840 -4.7089 -1.1347 22 6 2.9769 -3.6490 -1.2503 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 0.8798 -5.1264 -0.6123 27 1 0.9161 -4.8191 1.1411 28 1 2.0634 -6.9694 0.4728 29 1 3.1395 -5.8264 1.3190 30 1 5.6225 -6.7339 -2.3242 31 1 4.2381 -6.3839 -3.3870 32 1 4.8028 -4.4101 -0.3719 33 1 4.5889 -4.8190 -2.0945 34 1 2.3151 -3.8992 -2.0795 35 1 3.4273 -2.6721 -1.4260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063901172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:51 Heat of formation + Delta-G solvation = -180.856112 kcal Electronic energy + Delta-G solvation = -22495.266388 eV Core-core repulsion = 18499.378312 eV Total energy + Delta-G solvation = -3995.888075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.19873 -47.74305 -47.60701 -40.18507 -37.69722 -34.59992 -32.73667 -32.12128 -30.62780 -28.33361 -25.78353 -24.27686 -23.31906 -22.09553 -20.80399 -19.25611 -18.67955 -18.56571 -17.50767 -16.87553 -16.45566 -15.74264 -15.53551 -14.83717 -14.58649 -14.54663 -14.49064 -14.10853 -14.01836 -13.80459 -13.78979 -13.72618 -13.53836 -13.34122 -12.55462 -12.48299 -12.11218 -11.93222 -11.40131 -11.18062 -11.07519 -10.86418 -10.71345 -10.63269 -10.06110 -9.93294 -9.36095 -8.68515 -8.53203 -7.44129 -6.12710 -4.15421 2.35495 2.37252 2.90129 3.24492 3.31864 3.34836 3.53093 3.82549 3.86518 4.32457 4.42057 4.65436 4.78683 4.83262 5.10191 5.21598 5.25855 5.36348 5.51272 5.62192 5.72150 5.88862 6.17683 6.31536 6.32921 6.47985 7.12149 7.18185 7.26722 7.65794 7.91337 7.92160 8.02873 8.38223 8.91544 9.49598 10.98038 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.003673 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.092594 B = 7620.461802 C = 8021.831555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.119 3.881 13 N -0.601 5.601 14 C 0.518 3.482 15 O -0.532 6.532 16 C -0.196 4.196 17 C 0.473 3.527 18 F -0.173 7.173 19 F -0.184 7.184 20 F -0.174 7.174 21 C 0.104 3.896 22 C 0.049 3.951 23 H 0.262 0.738 24 H -0.008 1.008 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.101 -12.617 -5.535 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.003 4.003 13 N -0.334 5.334 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.237 4.237 17 C 0.418 3.582 18 F -0.155 7.155 19 F -0.166 7.166 20 F -0.156 7.156 21 C -0.019 4.019 22 C -0.080 4.080 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.979 -12.995 -4.969 17.121 hybrid contribution -0.170 0.839 -0.820 1.185 sum 9.809 -12.156 -5.789 16.658 Atomic orbital electron populations 1.69953 1.06123 1.26965 1.50551 1.24996 0.94855 0.99391 0.95268 0.86493 0.79809 0.83038 0.78051 1.20715 1.21220 1.19726 1.21116 0.93436 0.89829 1.50659 0.91788 1.19738 0.89975 0.87096 0.96337 1.62089 1.28182 1.02769 1.33031 1.22422 0.94908 0.90416 1.01186 1.21833 0.91618 0.99807 0.87051 1.48149 1.46662 1.08214 1.30338 1.19697 0.82162 0.84198 0.83592 1.90791 1.51577 1.29695 1.68849 1.23023 1.05486 0.94801 1.00405 1.19742 0.73988 0.88332 0.76131 1.93224 1.40238 1.91260 1.90737 1.93194 1.71108 1.96862 1.55405 1.93217 1.87065 1.71589 1.63679 1.22233 0.96512 0.82535 1.00579 1.22422 0.95008 0.98998 0.91602 0.92793 0.99031 0.94939 0.95389 0.89807 0.89139 0.90522 0.84400 0.84366 0.89942 0.90220 0.95505 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.51 -13.40 8.41 -34.44 -0.29 -13.69 16 8 H 0.06 1.63 7.13 -52.49 -0.37 1.25 16 9 C 0.19 4.71 4.72 -4.98 -0.02 4.68 16 10 N -0.54 -10.38 4.62 -235.47 -1.09 -11.47 16 11 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 12 C 0.12 1.70 6.60 -3.61 -0.02 1.68 16 13 N -0.60 -8.01 3.00 -172.19 -0.52 -8.53 16 14 C 0.52 6.86 7.48 -10.98 -0.08 6.78 16 15 O -0.53 -8.92 14.29 5.56 0.08 -8.84 16 16 C -0.20 -1.79 4.12 -27.88 -0.11 -1.91 16 17 C 0.47 5.29 2.89 37.16 0.11 5.39 16 18 F -0.17 -2.32 16.40 2.25 0.04 -2.28 16 19 F -0.18 -1.88 17.32 2.25 0.04 -1.84 16 20 F -0.17 -2.25 16.40 2.25 0.04 -2.21 16 21 C 0.10 1.25 6.53 -3.36 -0.02 1.23 16 22 C 0.05 0.80 5.47 -3.47 -0.02 0.78 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H -0.01 -0.21 8.12 -51.93 -0.42 -0.64 16 25 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 28 H 0.09 1.30 7.06 -51.93 -0.37 0.93 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.14 0.84 7.99 -51.93 -0.41 0.43 16 31 H 0.14 0.95 7.67 -51.93 -0.40 0.55 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.66 6.02 -51.93 -0.31 0.35 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 1.74 6.67 -51.93 -0.35 1.39 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -31.04 300.96 -6.04 -37.08 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -4.29 Total: -4.07 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.59 Total: 7.02 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.87 Total: -44.91 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.04 -6.04 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063901172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.779 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds