Wall clock time and date at job start Tue Mar 31 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48497 * 109.47351 * 270.00633 * 3 2 1 5 5 H 1.48501 * 109.46943 * 30.00376 * 3 2 1 6 6 H 1.48495 * 109.46956 * 150.00118 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99915 * 170.00172 * 10 9 7 12 12 C 1.53235 * 109.34089 * 187.25745 * 11 10 9 13 13 N 1.47078 * 108.51875 * 306.16805 * 12 11 10 14 14 C 1.34777 * 120.88364 * 231.18486 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 F 1.39895 * 109.47411 * 59.99903 * 17 16 14 19 19 F 1.39898 * 109.46890 * 180.02562 * 17 16 14 20 20 F 1.39904 * 109.47059 * 299.99645 * 17 16 14 21 21 C 1.47083 * 118.23673 * 51.46281 * 13 12 11 22 22 C 1.46894 * 111.00366 * 294.30322 * 10 9 7 23 23 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47014 * 60.00085 * 9 7 2 25 25 H 1.09003 * 109.47023 * 300.00816 * 9 7 2 26 26 H 1.08996 * 109.49284 * 67.29670 * 11 10 9 27 27 H 1.09005 * 109.49020 * 307.22016 * 11 10 9 28 28 H 1.09004 * 109.62945 * 186.46254 * 12 11 10 29 29 H 1.08995 * 109.62961 * 65.87639 * 12 11 10 30 30 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 31 31 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 32 32 H 1.08995 * 109.63429 * 68.24707 * 21 13 12 33 33 H 1.09000 * 109.62775 * 188.83040 * 21 13 12 34 34 H 1.08997 * 109.49334 * 292.70971 * 22 10 9 35 35 H 1.09002 * 109.49100 * 52.78622 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4105 13 7 3.4618 -5.9861 -0.7543 14 6 3.7122 -7.1122 -1.4512 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 6 4.7471 -8.4724 -3.2479 18 9 3.4808 -8.9061 -3.6549 19 9 5.6050 -8.4353 -4.3523 20 9 5.2575 -9.3561 -2.2909 21 6 4.0840 -4.7089 -1.1347 22 6 2.9769 -3.6490 -1.2503 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 0.8798 -5.1264 -0.6123 27 1 0.9161 -4.8191 1.1411 28 1 2.0634 -6.9694 0.4728 29 1 3.1395 -5.8264 1.3190 30 1 5.6225 -6.7339 -2.3242 31 1 4.2381 -6.3839 -3.3870 32 1 4.8028 -4.4101 -0.3719 33 1 4.5889 -4.8190 -2.0945 34 1 2.3151 -3.8992 -2.0795 35 1 3.4273 -2.6721 -1.4260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063901172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:50 Heat of formation + Delta-G solvation = -202.261436 kcal Electronic energy + Delta-G solvation = -22496.194592 eV Core-core repulsion = 18499.378312 eV Total energy + Delta-G solvation = -3996.816280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.07135 -48.58973 -48.54004 -41.28788 -39.03341 -36.03678 -34.47179 -33.23665 -31.75573 -29.96003 -27.36254 -25.33819 -24.57290 -23.68537 -22.11709 -20.30036 -19.57839 -19.52464 -18.50469 -18.38590 -17.92405 -16.78573 -16.64075 -16.55954 -16.00505 -15.53638 -15.45658 -15.36292 -15.29553 -14.96077 -14.72140 -14.68689 -14.61507 -14.49975 -14.07462 -13.62357 -13.38859 -13.10138 -12.90252 -12.73481 -12.59016 -12.38289 -12.28060 -12.12181 -11.77472 -11.27062 -11.09685 -10.60474 -9.84653 -9.05678 -8.18733 -6.29217 1.37422 1.45327 1.46838 1.48957 1.57985 1.97207 2.42578 2.71492 2.93144 3.06599 3.14340 3.24379 3.57107 3.95749 4.03215 4.12453 4.20216 4.23669 4.28858 4.46499 4.54481 4.73154 4.84828 4.96236 5.03474 5.20202 5.23035 5.38336 5.65407 6.03470 6.17650 6.34105 6.56398 6.87317 6.89642 7.41306 8.92649 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.003673 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.092594 B = 7620.461802 C = 8021.831555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.539 5.539 11 C 0.043 3.957 12 C 0.128 3.872 13 N -0.604 5.604 14 C 0.515 3.485 15 O -0.572 6.572 16 C -0.187 4.187 17 C 0.469 3.531 18 F -0.191 7.191 19 F -0.177 7.177 20 F -0.187 7.187 21 C 0.114 3.886 22 C 0.044 3.956 23 H 0.263 0.737 24 H -0.041 1.041 25 H 0.002 0.998 26 H 0.015 0.985 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.018 0.982 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.839 -12.217 -6.289 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.558 4.558 8 H 0.091 0.909 9 C 0.081 3.919 10 N -0.263 5.263 11 C -0.087 4.087 12 C 0.005 3.995 13 N -0.336 5.336 14 C 0.303 3.697 15 O -0.452 6.452 16 C -0.227 4.227 17 C 0.414 3.586 18 F -0.173 7.173 19 F -0.158 7.158 20 F -0.169 7.169 21 C -0.008 4.008 22 C -0.084 4.084 23 H 0.072 0.928 24 H -0.023 1.023 25 H 0.021 0.979 26 H 0.033 0.967 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.196 0.804 31 H 0.186 0.814 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.036 0.964 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.752 -12.608 -5.737 18.828 hybrid contribution -1.058 0.647 -0.601 1.378 sum 11.694 -11.961 -6.338 17.888 Atomic orbital electron populations 1.70100 1.07969 1.27892 1.51906 1.25937 0.95629 1.03343 0.94838 0.85363 0.78629 0.78115 0.78397 1.19760 1.21472 1.18423 1.21464 0.93923 0.90548 1.49831 0.90921 1.19381 0.90145 0.89035 0.93361 1.62016 1.26954 1.02348 1.35027 1.22434 0.95648 0.90116 1.00453 1.21633 0.91326 0.98274 0.88229 1.48212 1.46454 1.08960 1.29972 1.20336 0.82000 0.83267 0.84082 1.90783 1.53238 1.31146 1.70042 1.23123 1.06640 0.93924 0.98981 1.20070 0.73332 0.89034 0.76160 1.93192 1.41524 1.91607 1.90931 1.93209 1.70740 1.96840 1.55039 1.93193 1.87162 1.72323 1.64220 1.22305 0.94635 0.80157 1.03655 1.22522 0.95731 1.00433 0.89758 0.92808 1.02311 0.97949 0.96687 0.90234 0.89292 0.89508 0.80357 0.81369 0.88742 0.85387 0.96388 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.89 13.29 21.45 0.28 -54.60 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.52 -27.35 8.41 25.60 0.22 -27.14 16 8 H 0.07 3.62 7.13 -2.91 -0.02 3.60 16 9 C 0.21 10.43 4.72 85.56 0.40 10.83 16 10 N -0.54 -20.91 4.62 -898.89 -4.15 -25.06 16 11 C 0.04 1.44 5.62 86.38 0.49 1.93 16 12 C 0.13 3.52 6.60 86.35 0.57 4.09 16 13 N -0.60 -14.50 3.00 -817.06 -2.45 -16.95 16 14 C 0.51 12.27 7.48 87.66 0.66 12.93 16 15 O -0.57 -18.50 14.29 -3.02 -0.04 -18.55 16 16 C -0.19 -2.62 4.12 29.85 0.12 -2.50 16 17 C 0.47 9.30 2.89 71.98 0.21 9.51 16 18 F -0.19 -4.87 16.40 44.97 0.74 -4.13 16 19 F -0.18 -3.09 17.32 44.97 0.78 -2.31 16 20 F -0.19 -4.52 16.40 44.97 0.74 -3.78 16 21 C 0.11 2.30 6.53 86.50 0.57 2.87 16 22 C 0.04 1.39 5.47 86.54 0.47 1.86 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 25 H 0.00 0.13 7.97 -2.39 -0.02 0.11 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.08 2.70 7.99 -2.38 -0.02 2.68 16 28 H 0.09 2.51 7.06 -2.39 -0.02 2.50 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.18 1.10 7.99 -2.39 -0.02 1.08 16 31 H 0.17 1.42 7.67 -2.39 -0.02 1.40 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.13 1.38 6.02 -2.39 -0.01 1.37 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 3.00 6.67 -2.39 -0.02 2.98 16 Total: -1.00 -69.82 300.96 3.19 -66.63 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.11 Total: 0.06 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 4.16 Total: 14.87 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -6.32 Total: -96.62 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.55 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 2.25 Total: -10.22 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.82 3.19 -66.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063901172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.627 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds