Wall clock time and date at job start Tue Mar 31 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 C 1.50706 * 109.46782 * 180.02562 * 3 2 1 5 5 N 1.30870 * 125.88529 * 270.02067 * 4 3 2 6 6 C 1.33688 * 109.76696 * 179.97438 * 5 4 3 7 7 S 1.76201 * 125.61258 * 180.02562 * 6 5 4 8 8 C 1.81400 * 102.99894 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47362 * 179.97438 * 8 7 6 10 10 C 1.47199 * 109.47490 * 179.97438 * 9 8 7 11 11 N 9.69340 * 144.70457 * 1.84530 * 3 1 2 12 12 N 1.31249 * 108.76585 * 359.73692 * 6 5 4 13 13 N 1.34348 * 125.88881 * 90.00331 * 4 3 2 14 14 C 1.46506 * 126.75310 * 359.97438 * 13 4 3 15 15 C 1.50699 * 109.46892 * 90.00295 * 14 13 4 16 16 H 1.08002 * 120.00511 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99783 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99573 * 180.27665 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 H 1.08990 * 109.47177 * 300.00247 * 1 2 3 24 24 H 1.09004 * 109.47235 * 60.00264 * 1 2 3 25 25 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47186 * 240.00162 * 2 1 3 27 27 H 1.08992 * 109.47225 * 120.00156 * 2 1 3 28 28 H 1.08992 * 109.46988 * 60.00253 * 3 2 1 29 29 H 1.09003 * 109.47074 * 299.99431 * 3 2 1 30 30 H 1.09001 * 109.46860 * 299.99843 * 8 7 6 31 31 H 1.09002 * 109.47291 * 59.99618 * 8 7 6 32 32 H 1.08992 * 109.47086 * 299.99866 * 9 8 7 33 33 H 1.09004 * 109.46725 * 60.00106 * 9 8 7 34 34 H 1.08992 * 109.47369 * 330.00377 * 14 13 4 35 35 H 1.09005 * 109.46360 * 209.99991 * 14 13 4 36 36 H 0.97004 * 119.99485 * 179.72881 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3146 1.4419 1.0593 6 6 5.5988 1.4415 0.6877 7 16 6.9826 1.4400 1.7784 8 6 8.3972 1.4408 0.6428 9 6 9.6979 1.4403 1.4484 10 6 10.8458 1.4403 0.5269 11 7 11.7317 1.4398 -0.1804 12 7 5.6589 1.4360 -0.6234 13 7 4.3342 1.4427 -1.0894 14 6 3.8965 1.4424 -2.4876 15 6 3.7460 2.8632 -2.9670 16 1 3.9551 3.6842 -2.2972 17 6 3.3415 3.1149 -4.2609 18 7 3.2155 4.3548 -4.6809 19 14 2.9806 1.6949 -5.4196 20 1 1.5486 1.3175 -5.3090 21 1 3.2776 2.1070 -6.8150 22 1 3.8287 0.5314 -5.0560 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 8.3586 0.5514 0.0138 31 1 8.3591 2.3314 0.0155 32 1 9.7363 2.3298 2.0770 33 1 9.7363 0.5498 2.0759 34 1 2.9388 0.9284 -2.5684 35 1 4.6375 0.9288 -3.1001 36 1 2.9347 4.5319 -5.5923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069560879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:45 Heat of formation + Delta-G solvation = 90.621612 kcal Electronic energy + Delta-G solvation = -18720.931737 eV Core-core repulsion = 15753.718181 eV Total energy + Delta-G solvation = -2967.213556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48277 -37.12025 -35.16545 -34.10221 -33.29149 -32.23959 -30.89888 -28.32047 -26.91712 -24.98158 -23.45958 -21.85308 -21.37226 -19.68756 -17.95274 -17.30547 -17.13282 -15.79329 -15.59932 -15.11892 -14.90504 -14.70301 -14.11806 -13.96699 -13.87307 -13.28271 -13.00333 -12.86484 -12.71302 -12.53217 -12.05411 -12.04831 -11.71175 -11.63315 -11.47219 -11.21558 -11.19365 -10.85723 -10.62072 -10.54283 -10.51467 -9.93750 -9.50928 -9.32177 -9.04607 -8.92557 -7.46810 -6.40543 -4.46298 1.22033 2.11666 2.17515 2.60366 2.61774 3.03768 3.11355 3.12612 3.21363 3.29625 3.84321 4.08570 4.54357 4.63017 4.66039 4.85985 5.07901 5.09777 5.14770 5.30987 5.39375 5.54783 5.68036 5.78258 5.84800 5.93543 6.05026 6.17110 6.23149 6.33886 6.43545 6.60079 6.92442 7.10101 7.34542 7.43964 8.11329 8.49213 8.62293 9.12935 10.71478 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.005090 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.972399 B = 5500.042441 C = 7189.033362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.042 4.042 4 C 0.285 3.715 5 N -0.533 5.533 6 C 0.180 3.820 7 S 0.022 5.978 8 C -0.120 4.120 9 C -0.007 4.007 10 C 0.214 3.786 11 N -0.430 5.430 12 N -0.314 5.314 13 N -0.322 5.322 14 C 0.226 3.774 15 C -0.548 4.548 16 H 0.081 0.919 17 C 0.084 3.916 18 N -0.880 5.880 19 Si 0.871 3.129 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.264 1.264 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -8.468 12.131 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.082 4.082 4 C 0.007 3.993 5 N -0.263 5.263 6 C -0.211 4.211 7 S 0.249 5.751 8 C -0.270 4.270 9 C -0.048 4.048 10 C -0.106 4.106 11 N -0.107 5.107 12 N -0.148 5.148 13 N -0.111 5.111 14 C 0.106 3.894 15 C -0.586 4.586 16 H 0.099 0.901 17 C -0.122 4.122 18 N -0.516 5.516 19 Si 0.696 3.304 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.188 1.188 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.057 -8.342 11.833 14.797 hybrid contribution -0.851 -0.438 -2.204 2.402 sum 2.206 -8.780 9.629 13.216 Atomic orbital electron populations 1.21747 0.95008 1.01682 1.02284 1.21465 0.96198 0.95380 1.02531 1.20256 0.83850 0.98688 1.05429 1.24106 0.96252 0.96584 0.82376 1.70398 0.99142 1.27450 1.29359 1.25417 0.96986 1.05594 0.93095 1.84848 0.90416 1.94126 1.05694 1.23455 0.93725 1.08348 1.01497 1.18852 0.84834 1.07064 0.94093 1.28752 0.94248 0.93364 0.94256 1.81152 1.11588 1.08705 1.09231 1.78268 0.99810 1.27440 1.09307 1.50413 1.02241 1.49379 1.09035 1.20155 0.95838 1.00309 0.73096 1.21056 1.48771 0.89853 0.98943 0.90086 1.24780 0.94177 0.95854 0.97355 1.69860 1.45105 1.18678 1.17989 0.86929 0.79574 0.82683 0.81179 1.19310 1.20280 1.18846 0.92411 0.92238 0.92666 0.92004 0.91377 0.88582 0.88188 0.88160 0.87919 0.86154 0.86238 0.93160 0.92911 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 3 C -0.04 -0.66 5.33 -27.88 -0.15 -0.81 16 4 C 0.28 5.58 7.23 -155.73 -1.13 4.45 16 5 N -0.53 -10.57 11.21 -10.96 -0.12 -10.70 16 6 C 0.18 3.44 8.28 -90.97 -0.75 2.69 16 7 S 0.02 0.29 22.16 -107.50 -2.38 -2.09 16 8 C -0.12 -1.28 5.51 37.16 0.20 -1.07 16 9 C -0.01 -0.05 5.71 -29.52 -0.17 -0.22 16 10 C 0.21 2.19 15.43 -20.84 -0.32 1.87 16 11 N -0.43 -5.89 18.52 42.06 0.78 -5.11 16 12 N -0.31 -6.74 12.26 30.13 0.37 -6.37 16 13 N -0.32 -7.04 3.61 -59.52 -0.22 -7.26 16 14 C 0.23 5.11 4.93 -5.19 -0.03 5.09 16 15 C -0.55 -14.61 9.94 -34.44 -0.34 -14.95 16 16 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.88 -25.23 13.96 55.43 0.77 -24.46 16 19 Si 0.87 19.24 27.47 -169.99 -4.67 14.57 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.10 1.64 7.74 -51.93 -0.40 1.23 16 30 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.03 7.13 -51.93 -0.37 0.66 16 35 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -32.72 333.46 -7.97 -40.70 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.96 Total: -0.62 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.57 Total: -3.69 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 1.58 Total: -53.89 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.38 Total: -2.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.72 -7.97 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069560879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.318 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds