Wall clock time and date at job start Tue Mar 31 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 C 1.50706 * 109.46782 * 180.02562 * 3 2 1 5 5 N 1.30870 * 125.88529 * 270.02067 * 4 3 2 6 6 C 1.33688 * 109.76696 * 179.97438 * 5 4 3 7 7 S 1.76201 * 125.61258 * 180.02562 * 6 5 4 8 8 C 1.81400 * 102.99894 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47362 * 179.97438 * 8 7 6 10 10 C 1.47199 * 109.47490 * 179.97438 * 9 8 7 11 11 N 9.69340 * 144.70457 * 1.84530 * 3 1 2 12 12 N 1.31249 * 108.76585 * 359.73692 * 6 5 4 13 13 N 1.34348 * 125.88881 * 90.00331 * 4 3 2 14 14 C 1.46506 * 126.75310 * 359.97438 * 13 4 3 15 15 C 1.50699 * 109.46892 * 90.00295 * 14 13 4 16 16 H 1.08002 * 120.00511 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99783 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99573 * 180.27665 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 H 1.08990 * 109.47177 * 300.00247 * 1 2 3 24 24 H 1.09004 * 109.47235 * 60.00264 * 1 2 3 25 25 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47186 * 240.00162 * 2 1 3 27 27 H 1.08992 * 109.47225 * 120.00156 * 2 1 3 28 28 H 1.08992 * 109.46988 * 60.00253 * 3 2 1 29 29 H 1.09003 * 109.47074 * 299.99431 * 3 2 1 30 30 H 1.09001 * 109.46860 * 299.99843 * 8 7 6 31 31 H 1.09002 * 109.47291 * 59.99618 * 8 7 6 32 32 H 1.08992 * 109.47086 * 299.99866 * 9 8 7 33 33 H 1.09004 * 109.46725 * 60.00106 * 9 8 7 34 34 H 1.08992 * 109.47369 * 330.00377 * 14 13 4 35 35 H 1.09005 * 109.46360 * 209.99991 * 14 13 4 36 36 H 0.97004 * 119.99485 * 179.72881 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3146 1.4419 1.0593 6 6 5.5988 1.4415 0.6877 7 16 6.9826 1.4400 1.7784 8 6 8.3972 1.4408 0.6428 9 6 9.6979 1.4403 1.4484 10 6 10.8458 1.4403 0.5269 11 7 11.7317 1.4398 -0.1804 12 7 5.6589 1.4360 -0.6234 13 7 4.3342 1.4427 -1.0894 14 6 3.8965 1.4424 -2.4876 15 6 3.7460 2.8632 -2.9670 16 1 3.9551 3.6842 -2.2972 17 6 3.3415 3.1149 -4.2609 18 7 3.2155 4.3548 -4.6809 19 14 2.9806 1.6949 -5.4196 20 1 1.5486 1.3175 -5.3090 21 1 3.2776 2.1070 -6.8150 22 1 3.8287 0.5314 -5.0560 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 8.3586 0.5514 0.0138 31 1 8.3591 2.3314 0.0155 32 1 9.7363 2.3298 2.0770 33 1 9.7363 0.5498 2.0759 34 1 2.9388 0.9284 -2.5684 35 1 4.6375 0.9288 -3.1001 36 1 2.9347 4.5319 -5.5923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069560879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:44 Heat of formation + Delta-G solvation = 70.727268 kcal Electronic energy + Delta-G solvation = -18721.794420 eV Core-core repulsion = 15753.718181 eV Total energy + Delta-G solvation = -2968.076239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.00161 -38.00346 -36.45595 -35.78266 -34.15320 -34.07692 -32.26591 -30.10739 -28.14072 -25.89190 -25.20332 -23.12440 -22.77903 -21.16044 -19.32780 -18.76901 -18.45675 -17.16070 -16.82492 -16.42149 -16.11437 -15.99175 -15.69669 -14.99905 -14.87042 -14.70577 -14.35263 -14.26767 -14.05579 -13.60544 -13.40859 -13.36462 -12.92203 -12.77342 -12.66351 -12.45500 -12.30219 -12.19317 -12.13349 -11.90404 -11.67103 -11.59037 -11.03427 -10.94683 -10.86847 -10.64858 -8.65901 -8.46649 -6.59869 0.05917 0.61561 0.97241 1.31489 1.34253 1.43151 1.71033 1.76574 1.79074 1.80240 2.21363 2.85404 3.11113 3.26416 3.73067 3.81061 3.89603 4.07430 4.12808 4.38486 4.41543 4.48305 4.57117 4.75151 4.76260 4.79309 4.91207 4.99215 5.01404 5.12106 5.19509 5.29668 5.38758 5.47183 5.76614 6.13075 6.43030 6.55207 6.95687 7.05015 8.69556 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.005090 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.972399 B = 5500.042441 C = 7189.033362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.043 4.043 4 C 0.285 3.715 5 N -0.547 5.547 6 C 0.168 3.832 7 S 0.071 5.929 8 C -0.120 4.120 9 C 0.004 3.996 10 C 0.243 3.757 11 N -0.495 5.495 12 N -0.352 5.352 13 N -0.348 5.348 14 C 0.237 3.763 15 C -0.555 4.555 16 H 0.024 0.976 17 C 0.029 3.971 18 N -0.932 5.932 19 Si 0.945 3.055 20 H -0.244 1.244 21 H -0.279 1.279 22 H -0.247 1.247 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -10.651 13.363 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.082 4.082 4 C 0.007 3.993 5 N -0.278 5.278 6 C -0.222 4.222 7 S 0.298 5.702 8 C -0.270 4.270 9 C -0.037 4.037 10 C -0.076 4.076 11 N -0.173 5.173 12 N -0.186 5.186 13 N -0.137 5.137 14 C 0.117 3.883 15 C -0.593 4.593 16 H 0.043 0.957 17 C -0.172 4.172 18 N -0.570 5.570 19 Si 0.766 3.234 20 H -0.167 1.167 21 H -0.204 1.204 22 H -0.170 1.170 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.400 -10.532 13.098 16.978 hybrid contribution -0.589 0.347 -2.422 2.517 sum 1.811 -10.185 10.676 14.866 Atomic orbital electron populations 1.21727 0.92871 1.02924 1.02727 1.21432 0.97897 0.93109 1.02351 1.20471 0.81440 1.00771 1.05558 1.24931 0.97760 0.94749 0.81840 1.70480 0.99631 1.28372 1.29322 1.26552 0.98739 1.03412 0.93464 1.84600 0.88464 1.93035 1.04108 1.23525 0.94692 1.07217 1.01615 1.19080 0.81022 1.10444 0.93118 1.29260 0.93820 0.91303 0.93216 1.81184 1.13853 1.11162 1.11053 1.78194 1.00116 1.29659 1.10659 1.50338 1.02930 1.51390 1.09022 1.19907 0.96926 0.97579 0.73920 1.21111 1.48916 0.90660 0.98597 0.95719 1.25769 0.93444 0.98940 0.99083 1.70018 1.46577 1.21569 1.18808 0.85762 0.80885 0.78950 0.77824 1.16737 1.20445 1.17036 0.91323 0.92498 0.91013 0.92653 0.91082 0.87042 0.89367 0.88816 0.89771 0.83006 0.82489 0.90399 0.93197 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 3 C -0.04 -1.29 5.33 29.85 0.16 -1.14 16 4 C 0.28 11.17 7.23 138.24 1.00 12.17 16 5 N -0.55 -21.53 11.21 -188.58 -2.11 -23.64 16 6 C 0.17 6.38 8.28 180.47 1.49 7.87 16 7 S 0.07 1.74 22.16 -56.49 -1.25 0.49 16 8 C -0.12 -2.37 5.51 71.98 0.40 -1.97 16 9 C 0.00 0.05 5.71 28.79 0.16 0.21 16 10 C 0.24 4.60 15.43 89.47 1.38 5.98 16 11 N -0.49 -13.41 18.52 19.98 0.37 -13.04 16 12 N -0.35 -15.36 12.26 -58.59 -0.72 -16.08 16 13 N -0.35 -15.46 3.61 -342.22 -1.24 -16.70 16 14 C 0.24 10.79 4.93 85.63 0.42 11.21 16 15 C -0.55 -30.65 9.94 25.60 0.25 -30.40 16 16 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 17 C 0.03 1.55 5.47 84.66 0.46 2.01 16 18 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 19 Si 0.95 39.17 27.47 68.60 1.88 41.05 16 20 H -0.24 -9.15 7.11 99.48 0.71 -8.45 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.25 -9.50 6.54 99.48 0.65 -8.84 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.09 2.89 7.74 -2.39 -0.02 2.87 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.16 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 3.08 7.13 -2.39 -0.02 3.07 16 35 H 0.05 2.28 7.20 -2.38 -0.02 2.27 16 36 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.67 333.46 4.88 -70.79 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.02 Total: 10.44 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 6.63 Total: 1.54 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -3.40 Total: -124.31 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.88 Total: 41.05 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.25 Total: 0.49 kcal Total: -75.67 4.88 -70.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069560879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.515 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds