Wall clock time and date at job start Tue Mar 31 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99808 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99866 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46843 * 180.02562 * 19 18 16 21 21 O 1.42897 * 109.46897 * 65.01107 * 20 19 18 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 0.96996 * 120.00092 * 0.02562 * 18 16 15 31 31 H 1.08994 * 109.47795 * 300.00714 * 19 18 16 32 32 H 1.09002 * 109.46877 * 60.01376 * 19 18 16 33 33 H 1.09005 * 109.46669 * 185.00424 * 20 19 18 34 34 H 1.08994 * 109.47641 * 305.00333 * 20 19 18 35 35 H 0.96698 * 114.00270 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 37 37 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7915 -9.3287 0.0478 18 7 5.5976 -9.2563 2.2593 19 6 6.3756 -10.4883 2.4115 20 6 6.4980 -10.8339 3.8969 21 8 5.2045 -11.1364 4.4236 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 5.2533 -8.8002 3.0430 31 1 5.8729 -11.3024 1.8895 32 1 7.3699 -10.3446 1.9885 33 1 7.1501 -11.6992 4.0161 34 1 6.9196 -9.9845 4.4342 35 1 5.2061 -11.3656 5.3631 36 1 5.2812 -4.5470 -0.1945 37 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069655460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:09 Heat of formation + Delta-G solvation = -85.156767 kcal Electronic energy + Delta-G solvation = -20511.970192 eV Core-core repulsion = 17062.088692 eV Total energy + Delta-G solvation = -3449.881500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96917 -39.07636 -37.55822 -36.83604 -34.57416 -34.25053 -32.36338 -30.38629 -30.21316 -28.84335 -25.83849 -24.65979 -22.72442 -22.03851 -20.92918 -20.59862 -18.49360 -18.05509 -17.98114 -17.05643 -16.54041 -15.58957 -15.21349 -14.74460 -14.67609 -14.51057 -14.33544 -13.86562 -13.62248 -13.52717 -13.45399 -13.07778 -12.77423 -12.59154 -12.05187 -11.72625 -11.65191 -11.39165 -10.97010 -10.75587 -10.67543 -10.58611 -10.47246 -10.14319 -9.41742 -9.27954 -8.91389 -8.71551 -8.26996 -7.31973 -6.52745 -4.11527 2.04521 2.14427 2.88054 3.08542 3.10037 3.15302 3.29018 3.78500 3.90564 4.29274 4.58174 4.62302 4.76196 4.93633 5.02013 5.17848 5.26756 5.42610 5.47299 5.57423 5.68894 5.84380 5.96540 6.13534 6.36943 6.38167 6.60186 6.64531 6.81773 6.92042 7.01745 7.15076 7.17492 7.29371 7.36177 7.72827 7.92227 8.08952 8.66863 8.92792 9.61333 10.64956 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.002713 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.389291 B =10319.842613 C =10470.667065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.195 4.195 12 C -0.053 4.053 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.600 6.600 18 N -0.745 5.745 19 C 0.140 3.860 20 C 0.063 3.937 21 O -0.570 6.570 22 C -0.050 4.050 23 C -0.237 4.237 24 H 0.271 0.729 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.397 0.603 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.381 0.619 36 H 0.108 0.892 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -15.600 8.033 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.479 6.479 18 N -0.402 5.402 19 C 0.015 3.985 20 C -0.015 4.015 21 O -0.376 6.376 22 C -0.069 4.069 23 C -0.257 4.257 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.231 0.769 30 H 0.232 0.768 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.052 -15.778 6.496 20.329 hybrid contribution 0.363 1.188 1.351 1.835 sum 11.414 -14.590 7.847 20.118 Atomic orbital electron populations 1.70044 1.06008 1.27749 1.45605 1.25323 0.95862 0.98940 0.96387 0.85626 0.79147 0.80218 0.78322 1.19045 1.20063 1.20089 1.21405 0.91891 0.80723 1.52876 0.88873 1.83978 1.34515 1.11559 1.77618 1.19443 0.90324 0.88046 0.91606 1.20217 0.99672 0.90273 1.11315 1.20550 0.92789 0.96848 0.97042 1.19235 0.93575 0.93541 1.15147 1.19823 0.98321 0.92177 0.82194 1.45492 1.57390 1.26029 1.10350 1.16022 0.79408 0.81067 0.83456 1.90901 1.57361 1.62060 1.37572 1.45013 1.59695 1.28382 1.07143 1.21189 0.96444 0.86652 0.94216 1.22463 0.85304 0.99618 0.94099 1.86557 1.29357 1.91852 1.29836 1.20647 0.98386 0.91659 0.96209 1.21160 0.93769 0.98951 1.11791 0.91937 0.86377 0.86918 0.91741 0.91785 0.76893 0.76786 0.91007 0.90283 0.91909 0.92858 0.77177 0.87392 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.71 9.49 30.89 0.29 -10.41 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.20 -3.97 9.99 -39.39 -0.39 -4.36 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.21 -3.48 5.25 -104.58 -0.55 -4.03 16 14 C 0.20 2.90 5.80 -5.19 -0.03 2.87 16 15 N -0.74 -9.76 5.55 -66.42 -0.37 -10.13 16 16 C 0.70 10.00 8.57 -86.92 -0.74 9.26 16 17 O -0.60 -10.85 16.34 5.29 0.09 -10.76 16 18 N -0.75 -7.95 5.51 -65.23 -0.36 -8.31 16 19 C 0.14 1.27 6.06 -4.04 -0.02 1.24 16 20 C 0.06 0.36 7.18 37.16 0.27 0.63 16 21 O -0.57 -3.98 13.60 -35.23 -0.48 -4.45 16 22 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 23 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 24 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.40 4.62 8.48 -40.82 -0.35 4.28 16 30 H 0.40 3.45 8.49 -40.82 -0.35 3.10 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.38 0.92 9.12 45.56 0.42 1.33 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -33.92 326.48 -6.91 -40.83 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -3.78 Total: 9.91 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.67 Total: -8.22 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.03 Total: -42.43 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.39 Total: -20.05 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.92 -6.91 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069655460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.326 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds