Wall clock time and date at job start Tue Mar 31 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99808 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99866 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46843 * 180.02562 * 19 18 16 21 21 O 1.42897 * 109.46897 * 65.01107 * 20 19 18 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 0.96996 * 120.00092 * 0.02562 * 18 16 15 31 31 H 1.08994 * 109.47795 * 300.00714 * 19 18 16 32 32 H 1.09002 * 109.46877 * 60.01376 * 19 18 16 33 33 H 1.09005 * 109.46669 * 185.00424 * 20 19 18 34 34 H 1.08994 * 109.47641 * 305.00333 * 20 19 18 35 35 H 0.96698 * 114.00270 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 37 37 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7915 -9.3287 0.0478 18 7 5.5976 -9.2563 2.2593 19 6 6.3756 -10.4883 2.4115 20 6 6.4980 -10.8339 3.8969 21 8 5.2045 -11.1364 4.4236 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 5.2533 -8.8002 3.0430 31 1 5.8729 -11.3024 1.8895 32 1 7.3699 -10.3446 1.9885 33 1 7.1501 -11.6992 4.0161 34 1 6.9196 -9.9845 4.4342 35 1 5.2061 -11.3656 5.3631 36 1 5.2812 -4.5470 -0.1945 37 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069655460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:09 Heat of formation + Delta-G solvation = -113.377885 kcal Electronic energy + Delta-G solvation = -20513.193952 eV Core-core repulsion = 17062.088692 eV Total energy + Delta-G solvation = -3451.105260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14564 -40.66705 -38.60553 -37.99413 -35.65816 -35.34646 -34.26869 -31.85456 -31.58187 -29.78803 -27.61448 -26.11159 -23.64203 -23.42996 -22.18284 -21.92878 -19.89455 -19.51731 -18.81864 -18.46818 -17.54253 -16.73650 -16.40564 -16.29209 -16.01284 -15.79839 -15.49901 -15.36230 -15.00882 -14.90743 -14.39509 -14.31947 -14.03910 -13.83547 -13.58634 -13.20040 -13.03580 -12.56646 -12.34453 -12.27348 -12.21448 -12.08316 -11.43918 -11.19719 -10.93725 -10.81208 -10.36279 -9.81832 -9.71448 -9.01752 -8.48392 -6.16515 0.52979 0.58109 1.36267 1.43347 1.54249 1.85897 2.17171 2.18114 2.80999 3.13164 3.35267 3.48202 3.51383 3.88809 4.04023 4.08630 4.17996 4.27763 4.47459 4.56225 4.57377 4.72581 4.81301 4.82496 4.92282 5.04634 5.14936 5.27140 5.47504 5.52761 5.54559 5.69192 5.76220 6.01717 6.02938 6.16549 6.92960 6.96607 7.10971 7.59892 7.75988 8.74762 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.002713 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.389291 B =10319.842613 C =10470.667065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.697 3.303 17 O -0.640 6.640 18 N -0.732 5.732 19 C 0.132 3.868 20 C 0.071 3.929 21 O -0.595 6.595 22 C -0.044 4.044 23 C -0.243 4.243 24 H 0.273 0.727 25 H 0.115 0.885 26 H 0.146 0.854 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.407 0.593 30 H 0.410 0.590 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.140 0.860 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.726 -17.180 8.925 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.224 4.224 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.397 3.603 17 O -0.522 6.522 18 N -0.389 5.389 19 C 0.008 3.992 20 C -0.007 4.007 21 O -0.404 6.404 22 C -0.062 4.062 23 C -0.262 4.262 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.163 0.837 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.243 0.757 30 H 0.246 0.754 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.157 0.843 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.550 -17.417 7.451 23.291 hybrid contribution -0.277 1.268 1.085 1.691 sum 13.273 -16.149 8.536 22.580 Atomic orbital electron populations 1.70184 1.08049 1.28809 1.48698 1.26592 0.96829 1.02776 0.95814 0.84524 0.78315 0.74850 0.78508 1.17355 1.19519 1.19344 1.21880 0.92590 0.81320 1.53088 0.87857 1.83949 1.36072 1.12664 1.80834 1.19989 0.91645 0.87928 0.93248 1.20439 1.00069 0.90411 1.11445 1.20878 0.93106 0.96972 0.95232 1.19488 0.93431 0.94063 1.11276 1.19710 0.98165 0.91053 0.83070 1.45238 1.57326 1.25949 1.10128 1.16164 0.79207 0.80955 0.83953 1.90879 1.58973 1.63186 1.39158 1.44977 1.58992 1.28549 1.06355 1.21373 0.95912 0.85218 0.96715 1.22428 0.85287 1.01218 0.91727 1.86493 1.30100 1.92076 1.31742 1.20938 0.99837 0.90692 0.94780 1.21244 0.92972 1.00056 1.11955 0.91798 0.86678 0.83667 0.91400 0.91340 0.75729 0.75424 0.93000 0.90036 0.89709 0.91139 0.74919 0.84256 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 13.67 21.62 0.30 -55.33 16 2 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.43 9.76 -22.72 -0.22 -13.65 16 10 C 0.12 5.87 6.65 22.58 0.15 6.02 16 11 C -0.20 -8.29 9.99 22.39 0.22 -8.06 16 12 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 13 C -0.18 -5.33 5.25 -19.84 -0.10 -5.44 16 14 C 0.20 5.23 5.80 85.63 0.50 5.73 16 15 N -0.73 -16.95 5.55 -482.31 -2.68 -19.63 16 16 C 0.70 18.18 8.57 179.06 1.53 19.71 16 17 O -0.64 -21.98 16.34 -3.98 -0.07 -22.05 16 18 N -0.73 -13.78 5.51 -478.54 -2.64 -16.42 16 19 C 0.13 2.13 6.06 86.38 0.52 2.65 16 20 C 0.07 0.61 7.18 71.98 0.52 1.12 16 21 O -0.59 -6.71 13.60 -148.98 -2.03 -8.74 16 22 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 23 C -0.24 -10.02 9.17 22.39 0.21 -9.81 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 26 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.41 8.01 8.48 -92.71 -0.79 7.23 16 30 H 0.41 5.86 8.49 -92.71 -0.79 5.07 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.40 0.82 9.12 -74.06 -0.68 0.14 16 36 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 Total: -1.00 -77.55 326.48 -1.33 -78.88 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -1.12 Total: 26.94 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.09 Total: -14.02 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -5.02 Total: -91.38 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -2.31 Total: -44.43 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -77.55 -1.33 -78.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069655460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.499 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds