Wall clock time and date at job start Tue Mar 31 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47182 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46871 * 120.00047 * 3 2 1 6 6 H 1.48500 * 109.47079 * 239.99891 * 3 2 1 7 7 C 1.38814 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00254 * 204.49563 * 7 2 1 9 9 N 1.36939 * 119.99535 * 24.49615 * 7 2 1 10 10 C 1.47069 * 120.88522 * 28.08044 * 9 7 2 11 11 C 1.53699 * 108.27781 * 128.75392 * 10 9 7 12 12 N 1.46899 * 109.25018 * 54.08575 * 11 10 9 13 13 C 1.38317 * 110.99782 * 172.60746 * 12 11 10 14 14 N 1.31633 * 127.50450 * 304.30263 * 13 12 11 15 15 C 1.31297 * 116.79159 * 179.97438 * 14 13 12 16 16 C 1.50706 * 121.06069 * 179.97438 * 15 14 13 17 17 C 1.52992 * 117.49755 * 188.62585 * 16 15 14 18 18 C 1.52997 * 60.00115 * 252.51268 * 17 16 15 19 19 N 1.30125 * 117.87383 * 0.02562 * 15 14 13 20 20 S 1.69947 * 105.76535 * 359.73028 * 19 15 14 21 21 C 1.46897 * 111.27127 * 296.75478 * 12 11 10 22 22 C 1.47083 * 120.87415 * 208.36564 * 9 7 2 23 23 H 0.97002 * 120.00038 * 185.79087 * 1 2 3 24 24 H 1.08997 * 109.63835 * 248.52586 * 10 9 7 25 25 H 1.09007 * 109.62938 * 9.11094 * 10 9 7 26 26 H 1.08999 * 109.65235 * 294.08790 * 11 10 9 27 27 H 1.08997 * 109.44323 * 173.96318 * 11 10 9 28 28 H 1.08998 * 115.54493 * 334.33232 * 16 15 14 29 29 H 1.09005 * 117.50384 * 359.97438 * 17 16 15 30 30 H 1.08994 * 117.50319 * 145.02336 * 17 16 15 31 31 H 1.09004 * 117.49960 * 252.51871 * 18 17 16 32 32 H 1.08997 * 117.52423 * 107.47680 * 18 17 16 33 33 H 1.09003 * 109.49740 * 303.14884 * 21 12 11 34 34 H 1.08998 * 109.51765 * 183.08215 * 21 12 11 35 35 H 1.08997 * 109.63316 * 350.89426 * 22 9 7 36 36 H 1.08999 * 109.62981 * 111.48114 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0174 -1.2444 0.3872 9 7 1.4180 -2.3344 -0.4928 10 6 0.3838 -2.2533 -1.5353 11 6 0.7723 -3.2084 -2.6751 12 7 0.9956 -4.5524 -2.1258 13 6 1.1855 -5.4762 -3.1376 14 7 0.3816 -5.7357 -4.1471 15 6 0.7726 -6.6613 -4.9922 16 6 -0.0735 -7.0354 -6.1819 17 6 0.3558 -8.2561 -6.9982 18 6 0.5397 -6.8495 -7.5713 19 7 1.9135 -7.2460 -4.7691 20 16 2.5293 -6.5324 -3.3550 21 6 2.1236 -4.5630 -1.1848 22 6 1.7949 -3.6637 0.0116 23 1 -0.4850 -0.8358 0.0848 24 1 -0.5796 -2.5476 -1.1192 25 1 0.3257 -1.2330 -1.9148 26 1 1.6854 -2.8551 -3.1543 27 1 -0.0330 -3.2445 -3.4087 28 1 -1.1425 -6.8517 -6.0748 29 1 1.2505 -8.7885 -6.6750 30 1 -0.4308 -8.8760 -7.4283 31 1 -0.1261 -6.5439 -8.3784 32 1 1.5548 -6.4562 -7.6248 33 1 3.0179 -4.1907 -1.6848 34 1 2.2985 -5.5811 -0.8373 35 1 2.6700 -3.5764 0.6555 36 1 0.9645 -4.0911 0.5736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087639822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:21 Heat of formation + Delta-G solvation = 116.447743 kcal Electronic energy + Delta-G solvation = -19505.515130 eV Core-core repulsion = 16539.421480 eV Total energy + Delta-G solvation = -2966.093650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48063 -38.84166 -36.78611 -34.99117 -31.97808 -30.86424 -30.41134 -27.25797 -25.61978 -23.62534 -23.14641 -22.59201 -21.61171 -19.69350 -19.40708 -18.74654 -17.69614 -16.47354 -16.00531 -15.45844 -14.80581 -14.51812 -14.44889 -14.11840 -13.78419 -13.57757 -13.17125 -12.84039 -12.15899 -11.86109 -11.73450 -11.54324 -11.42261 -10.93740 -10.89252 -10.84168 -10.72914 -10.57638 -10.55769 -10.41243 -10.09446 -9.64304 -9.47201 -9.23214 -8.55950 -8.29327 -7.09615 -6.20819 -3.40427 0.53209 1.12241 1.73889 2.50664 3.09733 3.43195 3.46129 3.64444 3.74482 4.13114 4.47095 4.62941 4.76078 4.87718 5.01254 5.14906 5.27065 5.31004 5.42264 5.48143 5.52995 5.61427 5.69581 5.76451 5.77357 5.90227 5.96819 6.06917 6.12447 6.45258 6.61757 6.77748 6.86073 6.93460 7.73979 7.83660 8.41476 8.91677 9.67104 10.09689 11.08206 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.004048 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.768123 B = 6915.747579 C = 7293.493490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.019 4.019 3 Si 1.066 2.934 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.358 4.358 8 H 0.060 0.940 9 N -0.601 5.601 10 C 0.155 3.845 11 C 0.048 3.952 12 N -0.420 5.420 13 C 0.291 3.709 14 N -0.544 5.544 15 C 0.321 3.679 16 C -0.080 4.080 17 C -0.157 4.157 18 C -0.156 4.156 19 N -0.498 5.498 20 S 0.166 5.834 21 C 0.029 3.971 22 C 0.152 3.848 23 H 0.270 0.730 24 H 0.034 0.966 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -12.721 -10.061 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.222 4.222 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.487 4.487 8 H 0.078 0.922 9 N -0.325 5.325 10 C 0.029 3.971 11 C -0.081 4.081 12 N -0.139 5.139 13 C -0.088 4.088 14 N -0.272 5.272 15 C 0.031 3.969 16 C -0.104 4.104 17 C -0.194 4.194 18 C -0.195 4.195 19 N -0.330 5.330 20 S 0.304 5.696 21 C -0.100 4.100 22 C 0.025 3.975 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.679 -11.850 -9.896 15.670 hybrid contribution -0.139 -1.198 -0.224 1.226 sum 2.540 -13.048 -10.120 16.707 Atomic orbital electron populations 1.70803 1.06600 1.30491 1.47162 1.25933 0.96506 1.01608 0.98175 0.83517 0.74810 0.75898 0.76292 1.20957 1.21838 1.21945 1.19969 0.97393 0.88013 1.43331 0.92215 1.44251 1.45870 1.01452 1.40932 1.21250 0.91451 0.97550 0.86897 1.23216 1.01619 0.83624 0.99596 1.58003 1.38632 1.07012 1.10215 1.27414 0.91754 0.98343 0.91257 1.67241 1.32772 1.20965 1.06263 1.22306 0.90278 0.88896 0.95379 1.20369 0.98028 1.05029 0.86926 1.23042 1.03941 0.90713 1.01754 1.23026 1.02427 0.99808 0.94206 1.77357 1.14794 1.29302 1.11535 1.85026 1.25481 1.35263 1.23849 1.23217 0.89577 1.01959 0.95270 1.20991 0.99189 0.85855 0.91493 0.91868 0.94770 0.88983 0.92954 0.89453 0.85001 0.87568 0.87897 0.87673 0.88527 0.92075 0.90109 0.90835 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.10 12.48 55.49 0.69 -25.41 16 2 C -0.02 -0.52 4.71 -17.43 -0.08 -0.60 16 3 Si 1.07 24.07 29.98 -169.99 -5.10 18.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.36 -9.42 9.52 -15.06 -0.14 -9.56 16 8 H 0.06 1.56 7.94 -52.49 -0.42 1.15 16 9 N -0.60 -14.12 2.88 -171.73 -0.49 -14.61 16 10 C 0.16 3.44 4.88 -3.37 -0.02 3.42 16 11 C 0.05 0.89 5.56 -3.46 -0.02 0.87 16 12 N -0.42 -7.43 4.68 -173.95 -0.81 -8.25 16 13 C 0.29 4.92 7.02 -86.35 -0.61 4.32 16 14 N -0.54 -9.34 10.35 -14.58 -0.15 -9.49 16 15 C 0.32 4.95 7.22 -159.03 -1.15 3.80 16 16 C -0.08 -0.95 6.29 -91.77 -0.58 -1.52 16 17 C -0.16 -1.48 10.05 -26.74 -0.27 -1.75 16 18 C -0.16 -1.50 10.23 -26.73 -0.27 -1.77 16 19 N -0.50 -7.78 11.31 29.54 0.33 -7.45 16 20 S 0.17 2.50 22.15 -107.50 -2.38 0.12 16 21 C 0.03 0.47 4.75 -3.70 -0.02 0.45 16 22 C 0.15 2.93 6.69 -3.60 -0.02 2.91 16 23 H 0.27 7.80 6.64 -40.82 -0.27 7.53 16 24 H 0.03 0.79 7.77 -51.93 -0.40 0.38 16 25 H 0.09 2.25 6.49 -51.93 -0.34 1.91 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.57 7.89 -51.93 -0.41 1.16 16 28 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.11 1.13 7.65 -51.93 -0.40 0.73 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.08 1.14 7.53 -51.93 -0.39 0.75 16 35 H 0.07 1.36 7.95 -51.93 -0.41 0.94 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -29.53 308.89 -11.23 -40.75 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.79 Total: 0.16 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.18 Total: 0.56 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.43 Total: -65.21 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.10 Total: 18.97 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.38 Total: 0.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.53 -11.23 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.199 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds