Wall clock time and date at job start Tue Mar 31 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47182 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46871 * 120.00047 * 3 2 1 6 6 H 1.48500 * 109.47079 * 239.99891 * 3 2 1 7 7 C 1.38814 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00254 * 204.49563 * 7 2 1 9 9 N 1.36939 * 119.99535 * 24.49615 * 7 2 1 10 10 C 1.47069 * 120.88522 * 28.08044 * 9 7 2 11 11 C 1.53699 * 108.27781 * 128.75392 * 10 9 7 12 12 N 1.46899 * 109.25018 * 54.08575 * 11 10 9 13 13 C 1.38317 * 110.99782 * 172.60746 * 12 11 10 14 14 N 1.31633 * 127.50450 * 304.30263 * 13 12 11 15 15 C 1.31297 * 116.79159 * 179.97438 * 14 13 12 16 16 C 1.50706 * 121.06069 * 179.97438 * 15 14 13 17 17 C 1.52992 * 117.49755 * 188.62585 * 16 15 14 18 18 C 1.52997 * 60.00115 * 252.51268 * 17 16 15 19 19 N 1.30125 * 117.87383 * 0.02562 * 15 14 13 20 20 S 1.69947 * 105.76535 * 359.73028 * 19 15 14 21 21 C 1.46897 * 111.27127 * 296.75478 * 12 11 10 22 22 C 1.47083 * 120.87415 * 208.36564 * 9 7 2 23 23 H 0.97002 * 120.00038 * 185.79087 * 1 2 3 24 24 H 1.08997 * 109.63835 * 248.52586 * 10 9 7 25 25 H 1.09007 * 109.62938 * 9.11094 * 10 9 7 26 26 H 1.08999 * 109.65235 * 294.08790 * 11 10 9 27 27 H 1.08997 * 109.44323 * 173.96318 * 11 10 9 28 28 H 1.08998 * 115.54493 * 334.33232 * 16 15 14 29 29 H 1.09005 * 117.50384 * 359.97438 * 17 16 15 30 30 H 1.08994 * 117.50319 * 145.02336 * 17 16 15 31 31 H 1.09004 * 117.49960 * 252.51871 * 18 17 16 32 32 H 1.08997 * 117.52423 * 107.47680 * 18 17 16 33 33 H 1.09003 * 109.49740 * 303.14884 * 21 12 11 34 34 H 1.08998 * 109.51765 * 183.08215 * 21 12 11 35 35 H 1.08997 * 109.63316 * 350.89426 * 22 9 7 36 36 H 1.08999 * 109.62981 * 111.48114 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0174 -1.2444 0.3872 9 7 1.4180 -2.3344 -0.4928 10 6 0.3838 -2.2533 -1.5353 11 6 0.7723 -3.2084 -2.6751 12 7 0.9956 -4.5524 -2.1258 13 6 1.1855 -5.4762 -3.1376 14 7 0.3816 -5.7357 -4.1471 15 6 0.7726 -6.6613 -4.9922 16 6 -0.0735 -7.0354 -6.1819 17 6 0.3558 -8.2561 -6.9982 18 6 0.5397 -6.8495 -7.5713 19 7 1.9135 -7.2460 -4.7691 20 16 2.5293 -6.5324 -3.3550 21 6 2.1236 -4.5630 -1.1848 22 6 1.7949 -3.6637 0.0116 23 1 -0.4850 -0.8358 0.0848 24 1 -0.5796 -2.5476 -1.1192 25 1 0.3257 -1.2330 -1.9148 26 1 1.6854 -2.8551 -3.1543 27 1 -0.0330 -3.2445 -3.4087 28 1 -1.1425 -6.8517 -6.0748 29 1 1.2505 -8.7885 -6.6750 30 1 -0.4308 -8.8760 -7.4283 31 1 -0.1261 -6.5439 -8.3784 32 1 1.5548 -6.4562 -7.6248 33 1 3.0179 -4.1907 -1.6848 34 1 2.2985 -5.5811 -0.8373 35 1 2.6700 -3.5764 0.6555 36 1 0.9645 -4.0911 0.5736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087639822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:21 Heat of formation + Delta-G solvation = 99.169252 kcal Electronic energy + Delta-G solvation = -19506.264382 eV Core-core repulsion = 16539.421480 eV Total energy + Delta-G solvation = -2966.842902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71158 -40.25749 -37.79559 -36.63387 -33.61749 -32.31385 -32.05587 -28.84200 -26.94300 -25.26742 -24.77812 -23.33224 -22.84513 -21.33258 -20.51672 -20.06732 -19.46544 -17.94022 -17.01891 -16.68921 -16.23795 -16.04786 -15.85141 -15.60770 -15.37648 -15.25149 -14.75936 -13.88857 -13.72227 -13.16656 -13.03966 -12.77059 -12.57070 -12.45653 -12.38982 -12.29976 -12.22697 -12.04460 -11.88568 -11.60421 -11.47228 -11.39964 -10.89694 -10.53771 -10.42262 -9.60922 -9.03713 -8.28880 -5.46603 -0.73366 -0.13517 0.55007 1.32926 1.61586 1.67567 1.84051 1.86893 2.64085 2.88741 3.01322 3.17568 3.36702 3.76616 3.80510 3.86495 3.97057 4.00827 4.11594 4.16094 4.25615 4.31352 4.47244 4.58838 4.61733 4.73121 4.83601 4.94888 4.96419 5.07188 5.12591 5.22605 5.32552 5.42093 5.81447 6.34779 6.51720 6.95057 7.68767 8.13614 8.97883 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.004048 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.768123 B = 6915.747579 C = 7293.493490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.070 4.070 3 Si 1.114 2.886 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.360 4.360 8 H 0.060 0.940 9 N -0.619 5.619 10 C 0.165 3.835 11 C 0.067 3.933 12 N -0.431 5.431 13 C 0.274 3.726 14 N -0.561 5.561 15 C 0.315 3.685 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.145 4.145 19 N -0.509 5.509 20 S 0.204 5.796 21 C 0.039 3.961 22 C 0.149 3.851 23 H 0.255 0.745 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -14.095 -11.314 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.267 4.267 3 Si 0.939 3.061 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.489 4.489 8 H 0.078 0.922 9 N -0.344 5.344 10 C 0.039 3.961 11 C -0.062 4.062 12 N -0.150 5.150 13 C -0.104 4.104 14 N -0.291 5.291 15 C 0.026 3.974 16 C -0.129 4.129 17 C -0.179 4.179 18 C -0.183 4.183 19 N -0.341 5.341 20 S 0.342 5.658 21 C -0.089 4.089 22 C 0.023 3.977 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.158 0.842 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.770 -13.277 -11.153 17.745 hybrid contribution -0.439 -0.908 0.136 1.018 sum 3.331 -14.185 -11.017 18.267 Atomic orbital electron populations 1.70917 1.07624 1.29589 1.50060 1.27201 0.96536 1.04844 0.98112 0.82861 0.73836 0.72078 0.77352 1.22037 1.20062 1.20533 1.20243 0.97374 0.89118 1.42211 0.92181 1.44474 1.45914 1.02394 1.41597 1.20975 0.90660 0.96853 0.87648 1.22835 1.01580 0.83854 0.97914 1.57884 1.39725 1.06421 1.10987 1.27294 0.92881 0.98787 0.91444 1.67292 1.33438 1.21669 1.06660 1.22850 0.90477 0.88174 0.95869 1.20614 0.98085 1.07538 0.86710 1.23120 1.04033 0.90484 1.00237 1.23123 1.02104 0.99778 0.93330 1.77347 1.15125 1.29581 1.12008 1.84827 1.23785 1.33861 1.23341 1.23093 0.89184 1.02780 0.93837 1.21115 0.99270 0.84372 0.92923 0.93453 0.96499 0.91876 0.93105 0.88971 0.84195 0.88808 0.85124 0.85110 0.89717 0.91712 0.87202 0.89921 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 12.48 21.65 0.27 -55.14 16 2 C -0.07 -3.81 4.71 84.86 0.40 -3.41 16 3 Si 1.11 48.73 29.98 68.60 2.06 50.79 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.36 -19.03 9.52 84.03 0.80 -18.23 16 8 H 0.06 3.12 7.94 -2.91 -0.02 3.09 16 9 N -0.62 -29.36 2.88 -697.25 -2.01 -31.37 16 10 C 0.17 7.53 4.88 86.51 0.42 7.96 16 11 C 0.07 2.51 5.56 86.54 0.48 2.99 16 12 N -0.43 -14.88 4.68 -704.27 -3.30 -18.18 16 13 C 0.27 8.91 7.02 178.86 1.26 10.16 16 14 N -0.56 -18.67 10.35 -200.03 -2.07 -20.74 16 15 C 0.31 9.25 7.22 139.39 1.01 10.25 16 16 C -0.11 -2.30 6.29 -11.54 -0.07 -2.37 16 17 C -0.14 -2.30 10.05 30.59 0.31 -1.99 16 18 C -0.14 -2.42 10.23 30.59 0.31 -2.11 16 19 N -0.51 -15.01 11.31 -60.45 -0.68 -15.70 16 20 S 0.20 5.73 22.15 -56.49 -1.25 4.48 16 21 C 0.04 1.23 4.75 86.38 0.41 1.64 16 22 C 0.15 5.67 6.69 86.35 0.58 6.25 16 23 H 0.26 15.37 6.64 -92.71 -0.62 14.75 16 24 H 0.02 0.82 7.77 -2.39 -0.02 0.80 16 25 H 0.06 3.22 6.49 -2.38 -0.02 3.21 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 3.34 7.89 -2.39 -0.02 3.32 16 28 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.09 1.80 7.65 -2.38 -0.02 1.78 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 34 H 0.11 2.81 7.53 -2.39 -0.02 2.79 16 35 H 0.08 2.96 7.95 -2.39 -0.02 2.94 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -63.82 308.89 0.16 -63.66 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.24 Total: 11.04 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.90 Total: 11.15 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -7.79 Total: -141.12 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.06 Total: 50.79 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.25 Total: 4.48 kcal Total: -63.82 0.16 -63.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.833 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds