Wall clock time and date at job start Tue Mar 31 2020 01:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47340 * 154.02513 * 3 2 1 5 5 C 1.37095 * 120.00312 * 263.53544 * 4 3 2 6 6 H 1.08005 * 119.99740 * 202.54331 * 5 4 3 7 7 C 1.38947 * 120.00015 * 22.53589 * 5 4 3 8 8 N 1.31412 * 120.00179 * 17.10084 * 7 5 4 9 9 Si 1.86798 * 119.99897 * 197.10096 * 7 5 4 10 10 H 1.48496 * 109.47399 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47103 * 120.00400 * 9 7 5 12 12 H 1.48503 * 109.47316 * 239.99914 * 9 7 5 13 13 C 1.34778 * 119.99453 * 83.53007 * 4 3 2 14 14 O 1.21301 * 119.99561 * 184.60537 * 13 4 3 15 15 C 1.50699 * 120.00316 * 4.60509 * 13 4 3 16 16 H 1.09001 * 109.46959 * 357.31992 * 15 13 4 17 17 C 1.52999 * 109.46946 * 237.32517 * 15 13 4 18 18 C 1.53001 * 109.47321 * 299.99929 * 17 15 13 19 19 C 1.53004 * 109.47026 * 300.00223 * 18 17 15 20 20 C 1.52997 * 109.46887 * 59.99759 * 19 18 17 21 21 H 1.09002 * 109.47276 * 60.00559 * 20 19 18 22 22 C 1.50701 * 109.46628 * 179.97438 * 20 19 18 23 23 O 1.20831 * 119.99720 * 120.00118 * 22 20 19 24 24 O 1.34225 * 120.00497 * 299.99997 * 22 20 19 25 25 C 1.52994 * 109.47091 * 117.32428 * 15 13 4 26 26 H 1.09007 * 109.47132 * 34.02661 * 3 2 1 27 27 H 1.09000 * 109.47676 * 274.03120 * 3 2 1 28 28 H 0.96999 * 120.00223 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47317 * 59.99655 * 17 15 13 30 30 H 1.09002 * 109.47073 * 179.97438 * 17 15 13 31 31 H 1.09006 * 109.47083 * 60.00208 * 18 17 15 32 32 H 1.09001 * 109.47244 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.46706 * 299.99969 * 19 18 17 34 34 H 1.08994 * 109.47105 * 180.02562 * 19 18 17 35 35 H 0.96702 * 117.00626 * 179.97438 * 24 22 20 36 36 H 1.09005 * 109.47115 * 179.97438 * 25 15 13 37 37 H 1.09001 * 109.47349 * 299.99937 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2425 -0.6049 5 6 3.4504 1.2670 -1.9290 6 1 4.1292 2.0244 -2.2923 7 6 2.9366 0.3173 -2.8035 8 7 1.8771 -0.3826 -2.4649 9 14 3.7518 0.0354 -4.4603 10 1 4.9188 0.9432 -4.5987 11 1 4.2083 -1.3746 -4.5539 12 1 2.7768 0.3129 -5.5455 13 6 3.1959 2.3611 0.1403 14 8 3.5197 3.4086 -0.3786 15 6 2.9057 2.3104 1.6182 16 1 2.5873 1.3044 1.8916 17 6 1.7937 3.3061 1.9540 18 6 2.2404 4.7182 1.5702 19 6 3.5046 5.0830 2.3510 20 6 4.6166 4.0873 2.0152 21 1 4.8266 4.1240 0.9462 22 6 5.8619 4.4471 2.7838 23 8 6.3429 3.6553 3.5595 24 8 6.4368 5.6470 2.6068 25 6 4.1698 2.6752 2.3990 26 1 2.9717 -0.8509 -0.5751 27 1 2.9715 -0.0714 1.0251 28 1 1.5182 -1.0453 -3.0755 29 1 0.8930 3.0462 1.3977 30 1 1.5834 3.2691 3.0229 31 1 2.4503 4.7549 0.5011 32 1 1.4480 5.4275 1.8090 33 1 3.2946 5.0463 3.4200 34 1 3.8226 6.0892 2.0779 35 1 7.2337 5.8325 3.1222 36 1 3.9598 2.6389 3.4680 37 1 4.9621 1.9658 2.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104259751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:54 Heat of formation + Delta-G solvation = -99.936408 kcal Electronic energy + Delta-G solvation = -22855.353674 eV Core-core repulsion = 19404.831281 eV Total energy + Delta-G solvation = -3450.522393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60964 -39.42872 -37.01301 -35.98381 -35.48164 -34.24854 -32.11993 -31.02106 -30.53096 -27.51107 -25.22174 -24.30673 -22.75386 -21.10800 -20.28808 -18.62701 -17.92938 -17.73777 -16.72575 -16.36666 -16.12130 -15.57018 -14.72918 -14.63137 -14.33105 -14.15132 -13.44118 -13.18494 -13.02064 -12.77689 -12.39994 -12.17916 -11.98964 -11.81152 -11.74841 -11.52204 -11.41326 -11.20377 -11.16054 -11.04502 -10.67208 -10.56153 -10.51241 -10.38744 -10.30854 -9.89984 -9.79002 -9.26099 -8.26380 -8.03037 -6.52105 -4.07521 2.37820 3.05556 3.19920 3.20741 3.25298 3.51280 3.75371 3.99714 4.09629 4.65472 4.85678 4.87702 5.03464 5.15851 5.22883 5.35467 5.47648 5.58211 5.65608 5.74380 5.76699 5.89611 5.90970 6.12425 6.16762 6.22805 6.35616 6.43047 6.47028 6.52199 6.56105 6.63702 6.95237 7.42865 7.89184 8.03620 8.24530 8.74637 8.97045 9.15697 9.70086 10.53528 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.005870 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.107611 B = 4769.254078 C = 5451.163168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.247 3.753 3 C 0.219 3.781 4 N -0.441 5.441 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.879 5.879 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.462 3.538 14 O -0.563 6.563 15 C -0.110 4.110 16 H 0.086 0.914 17 C -0.101 4.101 18 C -0.132 4.132 19 C -0.094 4.094 20 C -0.091 4.091 21 H 0.143 0.857 22 C 0.484 3.516 23 O -0.526 6.526 24 O -0.516 6.516 25 C -0.083 4.083 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.273 0.727 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 4.871 9.246 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.072 4.072 3 C 0.091 3.909 4 N -0.160 5.160 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.518 5.518 9 Si 0.754 3.246 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.252 3.748 14 O -0.447 6.447 15 C -0.132 4.132 16 H 0.104 0.896 17 C -0.139 4.139 18 C -0.169 4.169 19 C -0.132 4.132 20 C -0.109 4.109 21 H 0.160 0.840 22 C 0.327 3.673 23 O -0.415 6.415 24 O -0.327 6.327 25 C -0.121 4.121 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.260 0.740 36 H 0.091 0.909 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.691 4.926 8.848 10.778 hybrid contribution 1.149 -0.345 -0.594 1.339 sum 4.841 4.581 8.254 10.609 Atomic orbital electron populations 1.80891 1.13568 1.08569 1.12175 1.29229 0.95312 0.92572 0.90046 1.18735 0.81750 0.92088 0.98279 1.43657 1.56248 1.06089 1.09999 1.19736 1.25761 1.15663 0.82687 0.87536 1.25329 0.94774 0.97229 0.99822 1.69779 1.19125 1.24817 1.38069 0.85832 0.79280 0.78274 0.81171 1.19134 1.20506 1.20868 1.20080 0.83141 0.83700 0.87902 1.90371 1.51914 1.28740 1.73656 1.21344 0.96477 1.00881 0.94470 0.89567 1.21340 0.97059 0.94895 1.00557 1.21811 0.95553 0.95379 1.04205 1.21337 0.94511 0.97847 0.99503 1.21411 0.89187 0.96880 1.03439 0.83967 1.23993 0.85384 0.78184 0.79718 1.90672 1.64248 1.50456 1.36075 1.84600 1.44511 1.37147 1.66436 1.21239 0.96738 0.94416 0.99681 0.85753 0.89599 0.91645 0.91848 0.91898 0.87608 0.92647 0.92708 0.91212 0.74016 0.90936 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.97 18.54 42.16 0.78 -10.19 16 2 C 0.25 5.30 13.19 -20.76 -0.27 5.03 16 3 C 0.22 4.18 4.77 -6.83 -0.03 4.15 16 4 N -0.44 -9.71 2.59 -117.93 -0.31 -10.02 16 5 C -0.31 -7.65 9.23 -14.94 -0.14 -7.79 16 6 H 0.11 2.74 7.48 -52.48 -0.39 2.35 16 7 C 0.03 0.77 4.94 -17.47 -0.09 0.69 16 8 N -0.88 -21.78 9.43 55.50 0.52 -21.26 16 9 Si 0.93 19.29 29.59 -169.99 -5.03 14.26 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.46 9.54 6.23 -10.99 -0.07 9.47 16 14 O -0.56 -12.83 11.08 5.54 0.06 -12.76 16 15 C -0.11 -1.79 2.68 -91.78 -0.25 -2.03 16 16 H 0.09 1.28 5.30 -51.93 -0.28 1.00 16 17 C -0.10 -1.54 5.44 -26.73 -0.15 -1.69 16 18 C -0.13 -2.01 5.63 -26.73 -0.15 -2.16 16 19 C -0.09 -1.29 5.14 -26.73 -0.14 -1.42 16 20 C -0.09 -1.37 2.33 -91.77 -0.21 -1.58 16 21 H 0.14 2.52 5.61 -51.93 -0.29 2.23 16 22 C 0.48 6.97 7.63 36.01 0.27 7.24 16 23 O -0.53 -8.66 16.74 -18.75 -0.31 -8.97 16 24 O -0.52 -6.01 13.33 -39.24 -0.52 -6.54 16 25 C -0.08 -1.23 4.01 -26.73 -0.11 -1.34 16 26 H 0.12 2.44 6.64 -51.92 -0.34 2.10 16 27 H 0.09 1.26 6.16 -51.93 -0.32 0.94 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.96 5.41 -51.93 -0.28 1.67 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.40 2.78 9.10 45.56 0.41 3.20 16 36 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -30.20 304.74 -5.12 -35.31 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.58 Total: 7.02 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -1.32 Total: 8.56 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 1.00 Total: -41.47 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.78 Total: -28.27 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -5.12 -35.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104259751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.622 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds