Wall clock time and date at job start Tue Mar 31 2020 01:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47340 * 154.02513 * 3 2 1 5 5 C 1.37095 * 120.00312 * 263.53544 * 4 3 2 6 6 H 1.08005 * 119.99740 * 202.54331 * 5 4 3 7 7 C 1.38947 * 120.00015 * 22.53589 * 5 4 3 8 8 N 1.31412 * 120.00179 * 17.10084 * 7 5 4 9 9 Si 1.86798 * 119.99897 * 197.10096 * 7 5 4 10 10 H 1.48496 * 109.47399 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47103 * 120.00400 * 9 7 5 12 12 H 1.48503 * 109.47316 * 239.99914 * 9 7 5 13 13 C 1.34778 * 119.99453 * 83.53007 * 4 3 2 14 14 O 1.21301 * 119.99561 * 184.60537 * 13 4 3 15 15 C 1.50699 * 120.00316 * 4.60509 * 13 4 3 16 16 H 1.09001 * 109.46959 * 357.31992 * 15 13 4 17 17 C 1.52999 * 109.46946 * 237.32517 * 15 13 4 18 18 C 1.53001 * 109.47321 * 299.99929 * 17 15 13 19 19 C 1.53004 * 109.47026 * 300.00223 * 18 17 15 20 20 C 1.52997 * 109.46887 * 59.99759 * 19 18 17 21 21 H 1.09002 * 109.47276 * 60.00559 * 20 19 18 22 22 C 1.50701 * 109.46628 * 179.97438 * 20 19 18 23 23 O 1.20831 * 119.99720 * 120.00118 * 22 20 19 24 24 O 1.34225 * 120.00497 * 299.99997 * 22 20 19 25 25 C 1.52994 * 109.47091 * 117.32428 * 15 13 4 26 26 H 1.09007 * 109.47132 * 34.02661 * 3 2 1 27 27 H 1.09000 * 109.47676 * 274.03120 * 3 2 1 28 28 H 0.96999 * 120.00223 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47317 * 59.99655 * 17 15 13 30 30 H 1.09002 * 109.47073 * 179.97438 * 17 15 13 31 31 H 1.09006 * 109.47083 * 60.00208 * 18 17 15 32 32 H 1.09001 * 109.47244 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.46706 * 299.99969 * 19 18 17 34 34 H 1.08994 * 109.47105 * 180.02562 * 19 18 17 35 35 H 0.96702 * 117.00626 * 179.97438 * 24 22 20 36 36 H 1.09005 * 109.47115 * 179.97438 * 25 15 13 37 37 H 1.09001 * 109.47349 * 299.99937 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2425 -0.6049 5 6 3.4504 1.2670 -1.9290 6 1 4.1292 2.0244 -2.2923 7 6 2.9366 0.3173 -2.8035 8 7 1.8771 -0.3826 -2.4649 9 14 3.7518 0.0354 -4.4603 10 1 4.9188 0.9432 -4.5987 11 1 4.2083 -1.3746 -4.5539 12 1 2.7768 0.3129 -5.5455 13 6 3.1959 2.3611 0.1403 14 8 3.5197 3.4086 -0.3786 15 6 2.9057 2.3104 1.6182 16 1 2.5873 1.3044 1.8916 17 6 1.7937 3.3061 1.9540 18 6 2.2404 4.7182 1.5702 19 6 3.5046 5.0830 2.3510 20 6 4.6166 4.0873 2.0152 21 1 4.8266 4.1240 0.9462 22 6 5.8619 4.4471 2.7838 23 8 6.3429 3.6553 3.5595 24 8 6.4368 5.6470 2.6068 25 6 4.1698 2.6752 2.3990 26 1 2.9717 -0.8509 -0.5751 27 1 2.9715 -0.0714 1.0251 28 1 1.5182 -1.0453 -3.0755 29 1 0.8930 3.0462 1.3977 30 1 1.5834 3.2691 3.0229 31 1 2.4503 4.7549 0.5011 32 1 1.4480 5.4275 1.8090 33 1 3.2946 5.0463 3.4200 34 1 3.8226 6.0892 2.0779 35 1 7.2337 5.8325 3.1222 36 1 3.9598 2.6389 3.4680 37 1 4.9621 1.9658 2.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104259751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:53 Heat of formation + Delta-G solvation = -118.852251 kcal Electronic energy + Delta-G solvation = -22856.173927 eV Core-core repulsion = 19404.831281 eV Total energy + Delta-G solvation = -3451.342646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86117 -40.78656 -38.43901 -37.21282 -36.96571 -35.98408 -33.84550 -32.28938 -31.79261 -29.16147 -26.91337 -25.44239 -24.14134 -22.33048 -21.52683 -20.12349 -19.59679 -18.90352 -18.09728 -17.99000 -17.44826 -16.77937 -16.31480 -16.00581 -15.76441 -15.64540 -14.76969 -14.62427 -14.52213 -14.20012 -13.71777 -13.58923 -13.42252 -13.32046 -13.16075 -13.00317 -12.87279 -12.76303 -12.48169 -12.34243 -12.23612 -12.12668 -12.08455 -11.77371 -11.64731 -11.09514 -11.07213 -10.93744 -9.85383 -9.80238 -8.35337 -5.95852 1.25979 1.39291 1.48423 1.59802 1.85350 2.07457 2.23761 2.32614 2.38053 3.05407 3.13968 3.59133 3.68249 3.82880 3.94738 4.13694 4.24705 4.32468 4.39427 4.54836 4.61973 4.68684 4.75804 4.80283 4.91882 5.01793 5.06620 5.17555 5.27782 5.32369 5.38497 5.50169 5.64964 5.71073 6.11837 6.45215 7.05927 7.07313 7.18686 7.41919 8.00280 8.67988 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.005870 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.107611 B = 4769.254078 C = 5451.163168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.259 3.741 3 C 0.219 3.781 4 N -0.459 5.459 5 C -0.330 4.330 6 H 0.084 0.916 7 C 0.002 3.998 8 N -0.899 5.899 9 Si 0.984 3.016 10 H -0.270 1.270 11 H -0.267 1.267 12 H -0.291 1.291 13 C 0.459 3.541 14 O -0.589 6.589 15 C -0.103 4.103 16 H 0.104 0.896 17 C -0.100 4.100 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.093 4.093 21 H 0.112 0.888 22 C 0.493 3.507 23 O -0.547 6.547 24 O -0.512 6.512 25 C -0.078 4.078 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.271 0.729 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.425 0.575 36 H 0.097 0.903 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 5.056 11.110 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.059 4.059 3 C 0.093 3.907 4 N -0.179 5.179 5 C -0.458 4.458 6 H 0.102 0.898 7 C -0.200 4.200 8 N -0.538 5.538 9 Si 0.809 3.191 10 H -0.194 1.194 11 H -0.192 1.192 12 H -0.218 1.218 13 C 0.250 3.750 14 O -0.473 6.473 15 C -0.124 4.124 16 H 0.122 0.878 17 C -0.138 4.138 18 C -0.168 4.168 19 C -0.125 4.125 20 C -0.112 4.112 21 H 0.130 0.870 22 C 0.337 3.663 23 O -0.438 6.438 24 O -0.325 6.325 25 C -0.116 4.116 26 H 0.138 0.862 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.286 0.714 36 H 0.115 0.885 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.353 5.129 10.728 12.662 hybrid contribution 0.991 -0.260 -1.174 1.558 sum 5.344 4.869 9.554 11.981 Atomic orbital electron populations 1.80887 1.14725 1.09746 1.13518 1.29718 0.95788 0.91456 0.88895 1.19028 0.80239 0.90690 1.00760 1.43845 1.56997 1.07571 1.09508 1.19646 1.26009 1.15662 0.84472 0.89806 1.25890 0.94986 0.96858 1.02227 1.69864 1.19841 1.25226 1.38843 0.85002 0.78006 0.78535 0.77562 1.19406 1.19179 1.21805 1.20974 0.81362 0.82890 0.89778 1.90382 1.52322 1.29754 1.74859 1.21368 0.97691 1.02350 0.90998 0.87800 1.21387 0.95567 0.94498 1.02328 1.21727 0.97058 0.96019 1.02010 1.21301 0.93015 0.97585 1.00552 1.21311 0.90411 0.97730 1.01769 0.87036 1.23687 0.85008 0.78527 0.79067 1.90669 1.64789 1.51220 1.37102 1.84540 1.45621 1.35665 1.66666 1.21228 0.95632 0.94101 1.00632 0.86239 0.84598 0.91864 0.94117 0.88365 0.91528 0.90842 0.90247 0.90711 0.71401 0.88490 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.52 18.54 20.00 0.37 -23.15 16 2 C 0.26 10.97 13.19 89.44 1.18 12.15 16 3 C 0.22 8.15 4.77 84.57 0.40 8.56 16 4 N -0.46 -20.28 2.59 -645.41 -1.67 -21.96 16 5 C -0.33 -16.56 9.23 84.04 0.78 -15.79 16 6 H 0.08 4.49 7.48 -2.91 -0.02 4.47 16 7 C 0.00 0.09 4.94 84.93 0.42 0.51 16 8 N -0.90 -44.73 9.43 21.66 0.20 -44.53 16 9 Si 0.98 39.96 29.59 68.60 2.03 41.99 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 12 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.46 18.93 6.23 87.66 0.55 19.48 16 14 O -0.59 -27.53 11.08 -3.09 -0.03 -27.56 16 15 C -0.10 -3.13 2.68 -11.54 -0.03 -3.16 16 16 H 0.10 2.77 5.30 -2.39 -0.01 2.76 16 17 C -0.10 -2.86 5.44 30.59 0.17 -2.69 16 18 C -0.13 -3.79 5.63 30.60 0.17 -3.61 16 19 C -0.09 -2.16 5.14 30.59 0.16 -2.00 16 20 C -0.09 -2.67 2.33 -11.54 -0.03 -2.69 16 21 H 0.11 3.97 5.61 -2.39 -0.01 3.95 16 22 C 0.49 13.12 7.63 71.24 0.54 13.66 16 23 O -0.55 -16.71 16.74 21.95 0.37 -16.34 16 24 O -0.51 -10.69 13.33 -51.37 -0.68 -11.37 16 25 C -0.08 -2.13 4.01 30.59 0.12 -2.00 16 26 H 0.12 4.61 6.64 -2.38 -0.02 4.59 16 27 H 0.14 3.61 6.16 -2.39 -0.01 3.60 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.49 5.41 -2.38 -0.01 2.48 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 35 H 0.42 4.68 9.10 -74.06 -0.67 4.01 16 36 H 0.10 2.23 8.10 -2.38 -0.02 2.21 16 37 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -66.25 304.74 5.46 -60.80 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.45 Total: 19.73 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 4.43 Total: 22.39 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -1.10 Total: -89.63 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -0.35 Total: -55.27 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -66.25 5.46 -60.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104259751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.056 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds