Wall clock time and date at job start Tue Mar 31 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47146 * 348.68076 * 3 2 1 5 5 C 1.37092 * 119.99832 * 272.83134 * 4 3 2 6 6 H 1.08000 * 119.99998 * 49.64403 * 5 4 3 7 7 C 1.38948 * 120.00057 * 229.64436 * 5 4 3 8 8 N 1.31411 * 120.00047 * 201.51573 * 7 5 4 9 9 Si 1.86799 * 119.99990 * 21.51276 * 7 5 4 10 10 H 1.48497 * 109.47441 * 87.79912 * 9 7 5 11 11 H 1.48499 * 109.47182 * 207.80156 * 9 7 5 12 12 H 1.48503 * 109.47285 * 327.79549 * 9 7 5 13 13 C 1.34771 * 119.99710 * 92.83135 * 4 3 2 14 14 O 1.21292 * 120.00442 * 5.24100 * 13 4 3 15 15 C 1.50708 * 119.99663 * 185.23680 * 13 4 3 16 16 H 1.08996 * 109.47188 * 300.74242 * 15 13 4 17 17 C 1.52997 * 109.46687 * 60.74341 * 15 13 4 18 18 C 1.53008 * 109.47295 * 59.99920 * 17 15 13 19 19 C 1.52999 * 109.46959 * 59.99909 * 18 17 15 20 20 C 1.53007 * 109.47191 * 300.00004 * 19 18 17 21 21 H 1.09001 * 109.46932 * 300.00334 * 20 19 18 22 22 C 1.50698 * 109.47061 * 180.02562 * 20 19 18 23 23 O 1.20826 * 119.99579 * 239.99554 * 22 20 19 24 24 O 1.34225 * 119.99931 * 59.99979 * 22 20 19 25 25 C 1.52998 * 109.46803 * 60.00199 * 20 19 18 26 26 H 1.09000 * 109.46980 * 228.67851 * 3 2 1 27 27 H 1.08999 * 109.46663 * 108.67713 * 3 2 1 28 28 H 0.97000 * 120.00280 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46808 * 179.97438 * 17 15 13 30 30 H 1.08995 * 109.47747 * 299.99941 * 17 15 13 31 31 H 1.08997 * 109.46965 * 179.97438 * 18 17 15 32 32 H 1.08994 * 109.47160 * 300.00027 * 18 17 15 33 33 H 1.08996 * 109.47168 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47455 * 60.00017 * 19 18 17 35 35 H 0.96703 * 117.00097 * 179.97438 * 24 22 20 36 36 H 1.08994 * 109.47404 * 59.99974 * 25 20 19 37 37 H 1.09009 * 109.46917 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3535 0.2711 5 6 3.2704 -1.7735 1.5645 6 1 2.4784 -1.6396 2.2865 7 6 4.4650 -2.3715 1.9466 8 7 4.5038 -3.1400 3.0119 9 14 6.0157 -2.0833 0.9459 10 1 6.7030 -0.8626 1.4384 11 1 6.9206 -3.2521 1.0875 12 1 5.6563 -1.9061 -0.4841 13 6 3.3763 -2.1863 -0.7511 14 8 3.3144 -1.7855 -1.8942 15 6 3.7657 -3.6155 -0.4737 16 1 4.6617 -3.6341 0.1466 17 6 2.6234 -4.3222 0.2588 18 6 1.3656 -4.2960 -0.6121 19 6 1.6454 -5.0141 -1.9338 20 6 2.7878 -4.3073 -2.6663 21 1 2.5062 -3.2736 -2.8669 22 6 3.0629 -5.0143 -3.9685 23 8 4.1533 -5.4905 -4.1786 24 8 2.0967 -5.1148 -4.8948 25 6 4.0454 -4.3336 -1.7955 26 1 2.9710 0.6794 0.7718 27 1 2.9711 0.3299 -0.9736 28 1 5.3378 -3.5572 3.2789 29 1 2.9048 -5.3561 0.4590 30 1 2.4240 -3.8107 1.2004 31 1 0.5520 -4.7999 -0.0904 32 1 1.0841 -3.2624 -0.8127 33 1 0.7496 -4.9951 -2.5544 34 1 1.9270 -6.0479 -1.7332 35 1 2.3206 -5.5768 -5.7143 36 1 4.3270 -5.3672 -1.5949 37 1 4.8592 -3.8297 -2.3172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104259754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:57 Heat of formation + Delta-G solvation = -97.178786 kcal Electronic energy + Delta-G solvation = -23419.773894 eV Core-core repulsion = 19969.371080 eV Total energy + Delta-G solvation = -3450.402814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63756 -39.59248 -36.97394 -35.94974 -35.77441 -34.92727 -32.41466 -31.03165 -30.43486 -27.88650 -24.76485 -24.10426 -22.85994 -21.02370 -20.33589 -19.20707 -17.86215 -17.68984 -16.85749 -16.52437 -15.63787 -15.53157 -15.35941 -14.55169 -14.27947 -13.95493 -13.68264 -13.37773 -13.10976 -12.99389 -12.64383 -12.52772 -12.25165 -11.98780 -11.86662 -11.77990 -11.47590 -11.30422 -11.09083 -10.92937 -10.72067 -10.69353 -10.40098 -10.30107 -10.23063 -9.68966 -9.53810 -9.17044 -8.69256 -8.01569 -6.69159 -4.42445 2.44966 2.93641 3.09115 3.11451 3.18247 3.28117 3.32914 3.51537 3.94477 4.34283 4.60602 4.81508 4.99089 5.12220 5.23150 5.53050 5.64867 5.72092 5.75038 5.88627 5.88803 5.93262 6.01044 6.05483 6.18336 6.38190 6.40674 6.52190 6.58255 6.67074 6.72766 6.86548 7.23237 7.39378 7.48277 8.06780 8.09987 8.26688 8.72268 8.99338 9.40296 10.38434 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.008312 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.084850 B = 3367.670761 C = 4111.301769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.213 3.787 3 C 0.190 3.810 4 N -0.468 5.468 5 C -0.357 4.357 6 H 0.103 0.897 7 C 0.084 3.916 8 N -0.841 5.841 9 Si 0.849 3.151 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.253 1.253 13 C 0.508 3.492 14 O -0.584 6.584 15 C -0.087 4.087 16 H 0.088 0.912 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.090 4.090 21 H 0.140 0.860 22 C 0.486 3.514 23 O -0.524 6.524 24 O -0.518 6.518 25 C -0.084 4.084 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.280 0.720 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.070 0.930 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 -2.311 -6.631 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.106 4.106 3 C 0.064 3.936 4 N -0.190 5.190 5 C -0.483 4.483 6 H 0.120 0.880 7 C -0.127 4.127 8 N -0.474 5.474 9 Si 0.674 3.326 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.177 1.177 13 C 0.299 3.701 14 O -0.468 6.468 15 C -0.107 4.107 16 H 0.106 0.894 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.158 0.842 22 C 0.329 3.671 23 O -0.412 6.412 24 O -0.329 6.329 25 C -0.122 4.122 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.259 0.741 36 H 0.089 0.911 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.306 -2.160 -6.712 7.419 hybrid contribution 1.689 -0.228 -0.800 1.883 sum -0.616 -2.388 -7.512 7.907 Atomic orbital electron populations 1.81052 1.13470 1.08469 1.10355 1.30129 0.96000 0.92630 0.91803 1.19047 0.80535 0.89346 1.04664 1.43591 1.60153 1.08395 1.06851 1.18831 1.01641 1.42362 0.85503 0.87979 1.25502 0.97764 0.94127 0.95260 1.69716 1.28221 1.24941 1.24512 0.87331 0.83804 0.79171 0.82312 1.19994 1.20061 1.17690 1.20543 0.77814 0.87465 0.84231 1.90457 1.57195 1.77422 1.21701 1.21174 1.00837 0.92394 0.96325 0.89385 1.21593 0.92329 1.00051 1.00944 1.21528 0.98534 1.00566 0.94643 1.21537 0.96713 0.99048 0.97158 1.21458 0.98591 1.02859 0.87937 0.84227 1.23925 0.81341 0.76113 0.85690 1.90666 1.25262 1.45818 1.79475 1.84596 1.45118 1.73315 1.29855 1.21266 0.95904 1.00672 0.94325 0.86441 0.86993 0.90963 0.92349 0.86667 0.91747 0.91993 0.91347 0.91944 0.74099 0.91141 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.06 18.54 42.16 0.78 -8.28 16 2 C 0.21 3.91 15.75 -20.76 -0.33 3.58 16 3 C 0.19 3.22 5.93 -6.83 -0.04 3.18 16 4 N -0.47 -9.50 1.96 -117.93 -0.23 -9.73 16 5 C -0.36 -7.88 7.20 -14.94 -0.11 -7.99 16 6 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.08 1.90 3.77 -17.47 -0.07 1.84 16 8 N -0.84 -20.11 13.96 55.50 0.77 -19.34 16 9 Si 0.85 18.07 24.82 -169.99 -4.22 13.85 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.25 -5.50 5.42 56.52 0.31 -5.19 16 13 C 0.51 10.61 3.10 -10.98 -0.03 10.58 16 14 O -0.58 -12.75 13.14 5.55 0.07 -12.68 16 15 C -0.09 -1.71 1.70 -91.77 -0.16 -1.87 16 16 H 0.09 1.85 3.14 -51.93 -0.16 1.69 16 17 C -0.11 -2.07 5.09 -26.73 -0.14 -2.20 16 18 C -0.12 -1.93 5.70 -26.73 -0.15 -2.08 16 19 C -0.11 -1.63 5.14 -26.73 -0.14 -1.76 16 20 C -0.09 -1.53 2.33 -91.77 -0.21 -1.75 16 21 H 0.14 2.65 5.48 -51.93 -0.28 2.37 16 22 C 0.49 7.85 7.63 36.00 0.27 8.12 16 23 O -0.52 -9.64 16.74 -18.75 -0.31 -9.96 16 24 O -0.52 -6.65 13.32 -39.24 -0.52 -7.17 16 25 C -0.08 -1.54 3.67 -26.73 -0.10 -1.64 16 26 H 0.12 1.68 8.06 -51.93 -0.42 1.26 16 27 H 0.11 1.76 7.28 -51.93 -0.38 1.38 16 28 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.12 2.42 5.55 -51.93 -0.29 2.13 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.16 7.22 -51.93 -0.37 0.79 16 33 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.21 9.10 45.56 0.41 3.63 16 36 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.07 1.39 8.07 -51.92 -0.42 0.97 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -27.69 300.03 -4.01 -31.69 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.67 Total: 9.08 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.19 Total: 8.01 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 1.33 Total: -37.35 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.76 Total: -29.80 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.22 Total: 13.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.69 -4.01 -31.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104259754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.487 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds