Wall clock time and date at job start Tue Mar 31 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47146 * 348.68076 * 3 2 1 5 5 C 1.37092 * 119.99832 * 272.83134 * 4 3 2 6 6 H 1.08000 * 119.99998 * 49.64403 * 5 4 3 7 7 C 1.38948 * 120.00057 * 229.64436 * 5 4 3 8 8 N 1.31411 * 120.00047 * 201.51573 * 7 5 4 9 9 Si 1.86799 * 119.99990 * 21.51276 * 7 5 4 10 10 H 1.48497 * 109.47441 * 87.79912 * 9 7 5 11 11 H 1.48499 * 109.47182 * 207.80156 * 9 7 5 12 12 H 1.48503 * 109.47285 * 327.79549 * 9 7 5 13 13 C 1.34771 * 119.99710 * 92.83135 * 4 3 2 14 14 O 1.21292 * 120.00442 * 5.24100 * 13 4 3 15 15 C 1.50708 * 119.99663 * 185.23680 * 13 4 3 16 16 H 1.08996 * 109.47188 * 300.74242 * 15 13 4 17 17 C 1.52997 * 109.46687 * 60.74341 * 15 13 4 18 18 C 1.53008 * 109.47295 * 59.99920 * 17 15 13 19 19 C 1.52999 * 109.46959 * 59.99909 * 18 17 15 20 20 C 1.53007 * 109.47191 * 300.00004 * 19 18 17 21 21 H 1.09001 * 109.46932 * 300.00334 * 20 19 18 22 22 C 1.50698 * 109.47061 * 180.02562 * 20 19 18 23 23 O 1.20826 * 119.99579 * 239.99554 * 22 20 19 24 24 O 1.34225 * 119.99931 * 59.99979 * 22 20 19 25 25 C 1.52998 * 109.46803 * 60.00199 * 20 19 18 26 26 H 1.09000 * 109.46980 * 228.67851 * 3 2 1 27 27 H 1.08999 * 109.46663 * 108.67713 * 3 2 1 28 28 H 0.97000 * 120.00280 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46808 * 179.97438 * 17 15 13 30 30 H 1.08995 * 109.47747 * 299.99941 * 17 15 13 31 31 H 1.08997 * 109.46965 * 179.97438 * 18 17 15 32 32 H 1.08994 * 109.47160 * 300.00027 * 18 17 15 33 33 H 1.08996 * 109.47168 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47455 * 60.00017 * 19 18 17 35 35 H 0.96703 * 117.00097 * 179.97438 * 24 22 20 36 36 H 1.08994 * 109.47404 * 59.99974 * 25 20 19 37 37 H 1.09009 * 109.46917 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3535 0.2711 5 6 3.2704 -1.7735 1.5645 6 1 2.4784 -1.6396 2.2865 7 6 4.4650 -2.3715 1.9466 8 7 4.5038 -3.1400 3.0119 9 14 6.0157 -2.0833 0.9459 10 1 6.7030 -0.8626 1.4384 11 1 6.9206 -3.2521 1.0875 12 1 5.6563 -1.9061 -0.4841 13 6 3.3763 -2.1863 -0.7511 14 8 3.3144 -1.7855 -1.8942 15 6 3.7657 -3.6155 -0.4737 16 1 4.6617 -3.6341 0.1466 17 6 2.6234 -4.3222 0.2588 18 6 1.3656 -4.2960 -0.6121 19 6 1.6454 -5.0141 -1.9338 20 6 2.7878 -4.3073 -2.6663 21 1 2.5062 -3.2736 -2.8669 22 6 3.0629 -5.0143 -3.9685 23 8 4.1533 -5.4905 -4.1786 24 8 2.0967 -5.1148 -4.8948 25 6 4.0454 -4.3336 -1.7955 26 1 2.9710 0.6794 0.7718 27 1 2.9711 0.3299 -0.9736 28 1 5.3378 -3.5572 3.2789 29 1 2.9048 -5.3561 0.4590 30 1 2.4240 -3.8107 1.2004 31 1 0.5520 -4.7999 -0.0904 32 1 1.0841 -3.2624 -0.8127 33 1 0.7496 -4.9951 -2.5544 34 1 1.9270 -6.0479 -1.7332 35 1 2.3206 -5.5768 -5.7143 36 1 4.3270 -5.3672 -1.5949 37 1 4.8592 -3.8297 -2.3172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104259754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:56 Heat of formation + Delta-G solvation = -114.509933 kcal Electronic energy + Delta-G solvation = -23420.525429 eV Core-core repulsion = 19969.371080 eV Total energy + Delta-G solvation = -3451.154349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.06719 -40.99293 -38.40195 -37.39270 -37.06983 -36.58457 -34.10881 -32.48749 -31.84371 -29.39554 -26.47327 -25.42888 -24.33504 -22.40773 -21.70502 -20.82368 -19.31418 -19.00910 -18.39878 -17.94415 -17.15530 -16.97232 -16.81573 -15.93547 -15.86608 -15.54983 -15.12754 -14.85586 -14.56018 -14.48338 -14.26663 -14.00711 -13.68406 -13.41910 -13.35073 -13.22558 -12.96875 -12.76009 -12.54003 -12.44380 -12.25723 -12.11169 -11.92380 -11.81886 -11.66826 -11.14382 -11.01318 -10.83329 -10.32746 -9.71695 -8.47346 -6.20041 1.19151 1.25164 1.39437 1.44679 1.57562 1.85640 1.87408 2.13202 2.20653 2.76806 2.96311 3.30028 3.63764 3.76445 3.87187 4.11750 4.20765 4.34067 4.39393 4.50100 4.54004 4.56904 4.69899 4.72527 4.77340 4.99883 5.00829 5.14681 5.19656 5.30425 5.44747 5.58323 5.65142 5.76079 5.77871 6.45088 6.61147 6.97838 7.01308 7.28844 7.72365 8.63589 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.008312 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.084850 B = 3367.670761 C = 4111.301769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.228 3.772 3 C 0.189 3.811 4 N -0.475 5.475 5 C -0.343 4.343 6 H 0.080 0.920 7 C 0.066 3.934 8 N -0.870 5.870 9 Si 0.888 3.112 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.261 1.261 13 C 0.505 3.495 14 O -0.594 6.594 15 C -0.091 4.091 16 H 0.074 0.926 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.099 4.099 20 C -0.090 4.090 21 H 0.122 0.878 22 C 0.495 3.505 23 O -0.550 6.550 24 O -0.508 6.508 25 C -0.081 4.081 26 H 0.149 0.851 27 H 0.130 0.870 28 H 0.282 0.718 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.425 0.575 36 H 0.081 0.919 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -2.727 -7.712 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.091 4.091 3 C 0.063 3.937 4 N -0.197 5.197 5 C -0.470 4.470 6 H 0.098 0.902 7 C -0.142 4.142 8 N -0.505 5.505 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.186 1.186 13 C 0.297 3.703 14 O -0.478 6.478 15 C -0.112 4.112 16 H 0.092 0.908 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.137 4.137 20 C -0.109 4.109 21 H 0.139 0.861 22 C 0.340 3.660 23 O -0.441 6.441 24 O -0.321 6.321 25 C -0.119 4.119 26 H 0.166 0.834 27 H 0.147 0.853 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.287 0.713 36 H 0.100 0.900 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.571 -2.566 -7.814 8.617 hybrid contribution 1.695 -0.091 -0.518 1.775 sum -0.875 -2.657 -8.333 8.790 Atomic orbital electron populations 1.81060 1.14394 1.09301 1.11532 1.30325 0.96129 0.91773 0.90830 1.19368 0.79538 0.88027 1.06740 1.43623 1.60172 1.09799 1.06082 1.18534 1.00785 1.42127 0.85574 0.90232 1.25722 0.99006 0.93922 0.95572 1.69765 1.28718 1.26089 1.25896 0.86745 0.82138 0.78905 0.80939 1.19820 1.20250 1.18550 1.20780 0.77481 0.87936 0.84150 1.90453 1.57625 1.77747 1.22015 1.21209 1.00650 0.92284 0.97026 0.90775 1.21499 0.92824 1.00238 0.99824 1.21458 0.98077 0.99643 0.95473 1.21507 0.96678 0.99347 0.96119 1.21321 0.98420 1.02312 0.88815 0.86088 1.23566 0.81204 0.75477 0.85786 1.90666 1.26324 1.47059 1.80016 1.84522 1.43749 1.73235 1.30591 1.21206 0.96204 1.00790 0.93676 0.83378 0.85284 0.90790 0.90982 0.89397 0.89981 0.94363 0.89641 0.90204 0.71317 0.90029 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -18.95 18.54 20.01 0.37 -18.58 16 2 C 0.23 8.11 15.75 89.44 1.41 9.52 16 3 C 0.19 6.10 5.93 84.57 0.50 6.60 16 4 N -0.47 -18.92 1.96 -645.41 -1.26 -20.18 16 5 C -0.34 -15.09 7.20 84.04 0.61 -14.48 16 6 H 0.08 3.87 8.06 -2.91 -0.02 3.84 16 7 C 0.07 2.97 3.77 84.93 0.32 3.29 16 8 N -0.87 -41.71 13.96 21.66 0.30 -41.41 16 9 Si 0.89 36.87 24.82 68.60 1.70 38.57 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.26 -11.11 5.42 99.48 0.54 -10.57 16 13 C 0.50 20.75 3.10 87.66 0.27 21.02 16 14 O -0.59 -25.45 13.14 -3.07 -0.04 -25.49 16 15 C -0.09 -3.54 1.70 -11.54 -0.02 -3.56 16 16 H 0.07 3.09 3.14 -2.39 -0.01 3.08 16 17 C -0.11 -3.85 5.09 30.60 0.16 -3.70 16 18 C -0.11 -3.48 5.70 30.60 0.17 -3.31 16 19 C -0.10 -2.76 5.14 30.60 0.16 -2.60 16 20 C -0.09 -2.92 2.33 -11.54 -0.03 -2.95 16 21 H 0.12 4.46 5.48 -2.39 -0.01 4.45 16 22 C 0.50 14.92 7.63 71.24 0.54 15.47 16 23 O -0.55 -19.29 16.74 21.96 0.37 -18.92 16 24 O -0.51 -11.48 13.32 -51.37 -0.68 -12.17 16 25 C -0.08 -2.90 3.67 30.59 0.11 -2.79 16 26 H 0.15 3.88 8.06 -2.39 -0.02 3.86 16 27 H 0.13 3.80 7.28 -2.39 -0.02 3.78 16 28 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 3.70 5.55 -2.39 -0.01 3.68 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.40 7.22 -2.39 -0.02 1.38 16 33 H 0.08 2.12 8.11 -2.39 -0.02 2.10 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.43 5.38 9.10 -74.06 -0.67 4.70 16 36 H 0.08 2.70 8.10 -2.39 -0.02 2.68 16 37 H 0.05 2.09 8.07 -2.38 -0.02 2.07 16 Total: -1.00 -58.39 300.03 5.24 -53.15 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.28 Total: 22.53 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 4.20 Total: 22.50 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -0.59 Total: -80.18 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -0.36 Total: -56.58 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.70 Total: 38.57 kcal Total: -58.39 5.24 -53.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104259754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.357 kcal (2) G-P(sol) polarization free energy of solvation -58.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds