Wall clock time and date at job start Tue Mar 31 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46503 * 109.44591 * 181.23295 * 12 11 10 14 14 C 1.34775 * 119.99376 * 84.79556 * 13 12 11 15 15 O 1.21277 * 120.00698 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47263 * 180.02562 * 16 14 13 18 18 F 1.39895 * 109.46889 * 60.00263 * 17 16 14 19 19 F 1.39901 * 109.47003 * 180.02562 * 17 16 14 20 20 F 1.39902 * 109.46739 * 300.00080 * 17 16 14 21 21 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 22 22 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 23 23 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 25 25 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 26 26 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 27 27 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 28 28 H 1.08996 * 109.35399 * 301.12990 * 12 11 10 29 29 H 0.96995 * 120.00576 * 264.80141 * 13 12 11 30 30 H 1.09003 * 109.47238 * 300.00196 * 16 14 13 31 31 H 1.09000 * 109.46867 * 60.00149 * 16 14 13 32 32 H 1.09002 * 109.49883 * 178.75013 * 21 12 11 33 33 H 1.08997 * 109.52642 * 58.66321 * 21 12 11 34 34 H 1.09007 * 109.58325 * 246.20224 * 22 9 7 35 35 H 1.08996 * 109.58499 * 6.48109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0399 -5.6475 2.9307 14 6 -0.0049 -6.2695 3.5120 15 8 -1.1336 -6.0459 3.1288 16 6 0.2293 -7.2429 4.6384 17 6 -1.1121 -7.8036 5.1152 18 9 -1.7460 -8.4607 4.0552 19 9 -0.8947 -8.7068 6.1612 20 9 -1.9220 -6.7555 5.5654 21 6 2.0675 -4.6174 0.9647 22 6 1.8138 -3.6528 -0.1981 23 1 -0.4850 0.8400 -0.0004 24 1 0.0994 -1.3343 1.6687 25 1 -0.6774 -2.6381 0.7363 26 1 1.3429 -2.9692 3.0020 27 1 -0.3880 -3.3841 3.0518 28 1 -0.0282 -5.0410 1.2308 29 1 1.9426 -5.8266 3.2371 30 1 0.8600 -8.0597 4.2875 31 1 0.7236 -6.7310 5.4641 32 1 2.3042 -5.6063 0.5721 33 1 2.9028 -4.2540 1.5632 34 1 1.0401 -4.0604 -0.8488 35 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:52 Heat of formation + Delta-G solvation = -177.180001 kcal Electronic energy + Delta-G solvation = -22481.423238 eV Core-core repulsion = 18485.694571 eV Total energy + Delta-G solvation = -3995.728667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.18072 -47.73314 -47.58028 -39.89025 -37.44740 -34.56157 -32.61893 -31.68911 -30.06096 -29.40476 -25.35693 -24.06027 -22.32463 -21.99201 -20.52165 -19.48198 -18.74334 -18.64343 -17.68578 -16.93745 -16.50918 -15.70631 -15.40398 -14.79000 -14.57248 -14.39770 -14.04161 -13.94735 -13.77432 -13.75306 -13.68726 -13.55412 -13.05351 -13.02907 -12.51081 -12.42365 -12.11888 -11.54626 -11.18420 -10.99824 -10.73875 -10.47023 -10.30009 -10.15706 -10.04874 -9.81072 -9.58711 -8.85551 -8.46682 -6.71672 -5.81267 -3.24748 2.41538 2.46447 3.04895 3.35921 3.43137 3.44835 3.54575 3.87843 4.03466 4.47090 4.63060 4.78764 4.81609 5.22686 5.36402 5.39742 5.56091 5.74610 6.00801 6.16337 6.22586 6.34778 6.52488 6.60057 6.71328 6.79335 6.88263 7.32410 7.44954 7.65169 7.76832 8.11458 8.42223 9.18007 9.81217 10.37675 11.27352 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.003621 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.617229 B = 7731.835681 C = 7991.992058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.717 5.717 14 C 0.512 3.488 15 O -0.519 6.519 16 C -0.197 4.197 17 C 0.472 3.528 18 F -0.173 7.173 19 F -0.186 7.186 20 F -0.172 7.172 21 C -0.138 4.138 22 C 0.148 3.852 23 H 0.255 0.745 24 H 0.090 0.910 25 H 0.021 0.979 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.397 0.603 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -15.855 10.280 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.367 5.367 14 C 0.296 3.704 15 O -0.395 6.395 16 C -0.238 4.238 17 C 0.417 3.583 18 F -0.155 7.155 19 F -0.168 7.168 20 F -0.153 7.153 21 C -0.178 4.178 22 C 0.021 3.979 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.231 0.769 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.478 -15.532 9.979 18.627 hybrid contribution 0.723 0.638 0.338 1.022 sum 3.201 -14.894 10.317 18.399 Atomic orbital electron populations 1.70030 1.05296 1.25637 1.53492 1.25067 0.95266 0.98475 1.00689 0.86312 0.79134 0.83652 0.77734 1.21355 1.21531 1.20489 1.19159 0.92541 0.84775 1.42189 0.91646 1.44100 1.35917 1.01536 1.49959 1.20754 0.88720 0.98087 0.87755 1.22580 1.00546 0.95001 1.00609 1.21143 0.99036 0.88564 0.86534 1.46223 1.08725 1.44468 1.37288 1.19719 0.85976 0.81497 0.83245 1.90844 1.22097 1.63542 1.63010 1.23003 0.95758 1.02927 1.02155 1.19728 0.87279 0.76037 0.75208 1.93224 1.84160 1.81618 1.56463 1.93189 1.94907 1.69141 1.59514 1.93237 1.75609 1.57170 1.89315 1.22339 0.96530 0.99844 0.99106 1.20840 0.98094 0.86750 0.92252 0.93523 0.89209 0.96065 0.92596 0.92701 0.89771 0.76894 0.84636 0.84556 0.92538 0.91759 0.96164 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.20 55.49 0.62 -25.46 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.47 3.00 -172.32 -0.52 -14.99 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.15 -2.82 5.66 -26.60 -0.15 -2.97 16 12 C 0.15 2.44 2.41 -67.87 -0.16 2.28 16 13 N -0.72 -8.72 5.08 -53.75 -0.27 -8.99 16 14 C 0.51 6.66 7.56 -10.99 -0.08 6.58 16 15 O -0.52 -9.30 14.50 5.56 0.08 -9.22 16 16 C -0.20 -1.61 5.75 -27.88 -0.16 -1.77 16 17 C 0.47 5.23 2.89 37.16 0.11 5.34 16 18 F -0.17 -2.29 16.40 2.25 0.04 -2.26 16 19 F -0.19 -1.84 17.32 2.25 0.04 -1.81 16 20 F -0.17 -2.35 16.40 2.25 0.04 -2.31 16 21 C -0.14 -2.14 5.55 -26.61 -0.15 -2.29 16 22 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 23 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 29 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 30 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -32.31 302.43 -5.72 -38.03 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.40 Total: -1.05 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.87 Total: 7.17 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.17 Total: -49.44 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.31 -5.72 -38.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.155 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds